Wall clock time and date at job start Wed Apr 1 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.41351 * 2 1 4 4 O 1.42996 * 109.44200 * 240.08794 * 2 1 3 5 5 C 1.35986 * 116.71413 * 286.33928 * 4 2 1 6 6 C 1.38397 * 120.66815 * 147.15989 * 5 4 2 7 7 C 1.38310 * 119.87486 * 180.10400 * 6 5 4 8 8 C 1.38284 * 120.25897 * 359.97438 * 7 6 5 9 9 C 1.38287 * 120.19870 * 359.97342 * 8 7 6 10 10 C 1.38507 * 119.81559 * 0.02872 * 9 8 7 11 11 N 1.40214 * 120.73769 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.51024 * 15.46623 * 11 10 9 13 13 C 1.50700 * 109.47257 * 89.99626 * 12 11 10 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27849 * 13 12 11 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.50706 * 109.47174 * 179.97438 * 16 15 13 18 18 O 1.21295 * 119.99429 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00107 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99559 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00395 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99947 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99402 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00241 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47092 * 60.00064 * 24 22 20 26 26 H 1.48496 * 109.47069 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47105 * 299.99687 * 24 22 20 28 28 C 1.35091 * 118.98147 * 195.73143 * 11 10 9 29 29 O 1.21284 * 120.13588 * 181.39053 * 28 11 10 30 30 H 1.08995 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46537 * 299.91303 * 1 2 3 32 32 H 1.08993 * 109.47248 * 59.90942 * 1 2 3 33 33 H 1.08001 * 120.06101 * 0.07711 * 6 5 4 34 34 H 1.07996 * 119.86934 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.89770 * 179.97438 * 8 7 6 36 36 H 1.07997 * 120.08778 * 180.02562 * 9 8 7 37 37 H 1.09009 * 109.46700 * 329.99520 * 12 11 10 38 38 H 1.08998 * 109.46827 * 210.00094 * 12 11 10 39 39 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 40 40 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 41 41 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 42 42 H 0.96993 * 120.00302 * 0.02562 * 19 17 16 43 43 H 0.97004 * 119.99339 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 8 2.0060 -0.6724 -1.1688 5 6 1.8872 -2.0270 -1.1858 6 6 1.6581 -2.7007 -2.3728 7 6 1.5378 -4.0785 -2.3708 8 6 1.6462 -4.7858 -1.1874 9 6 1.8762 -4.1197 0.0024 10 6 1.9975 -2.7399 0.0070 11 7 2.2314 -2.0450 1.2021 12 6 2.6840 -2.7568 2.4000 13 6 4.1904 -2.7915 2.4245 14 8 4.8236 -2.2732 1.5293 15 7 4.8338 -3.4039 3.4382 16 6 6.2981 -3.4428 3.4589 17 6 6.7637 -4.1792 4.6886 18 8 5.9520 -4.6278 5.4705 19 7 8.0818 -4.3403 4.9191 20 6 8.5052 -5.0107 6.0375 21 1 7.7825 -5.4101 6.7337 22 6 9.8642 -5.1763 6.2754 23 7 10.7435 -4.6906 5.4280 24 14 10.4411 -6.0903 7.7989 25 1 9.9095 -7.4767 7.7753 26 1 11.9254 -6.1301 7.8198 27 1 9.9471 -5.3912 9.0123 28 6 2.0277 -0.7099 1.2336 29 8 2.2476 -0.0842 2.2490 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5125 0.8908 32 1 -0.3633 0.5152 -0.8891 33 1 1.5729 -2.1515 -3.2988 34 1 1.3594 -4.6042 -3.2972 35 1 1.5510 -5.8615 -1.1926 36 1 1.9610 -4.6738 0.9255 37 1 2.2972 -3.7758 2.3849 38 1 2.3178 -2.2422 3.2883 39 1 4.3273 -3.8186 4.1540 40 1 6.6606 -3.9564 2.5685 41 1 6.6886 -2.4253 3.4757 42 1 8.7308 -3.9819 4.2937 43 1 11.6921 -4.8066 5.5939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376200512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:33 Heat of formation + Delta-G solvation = -100.513473 kcal Electronic energy + Delta-G solvation = -29977.201271 eV Core-core repulsion = 25602.329711 eV Total energy + Delta-G solvation = -4374.871560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -42.01816 -39.71583 -39.05762 -38.26717 -37.78484 -35.81205 -34.49945 -33.72980 -32.36148 -31.42767 -30.66413 -30.40954 -28.84119 -27.14882 -24.82308 -24.30254 -23.76774 -22.73883 -20.45347 -19.70511 -19.55086 -19.44301 -18.20262 -17.70240 -17.55023 -16.52467 -16.15543 -15.86950 -15.75466 -15.55235 -15.45806 -15.04585 -14.80287 -14.59399 -14.50201 -14.34150 -13.96475 -13.86301 -13.51943 -13.39467 -13.06357 -12.87585 -12.53978 -12.42545 -12.27526 -12.23509 -11.82863 -11.65569 -11.52342 -11.47115 -11.12330 -11.00296 -10.52678 -10.33954 -10.17538 -9.83668 -9.65375 -8.97614 -8.89705 -8.67534 -8.13169 -8.11747 -6.53836 -3.96164 0.80260 0.96508 1.97815 2.11870 2.65316 2.96548 3.11939 3.19649 3.21618 3.28172 3.44843 3.64499 3.70472 4.08964 4.27738 4.36461 4.47716 4.62048 4.68081 4.78759 4.83528 4.88751 4.90724 5.02264 5.08366 5.13124 5.14483 5.27914 5.33365 5.53022 5.64298 5.85372 5.85641 5.91415 6.01443 6.02971 6.16002 6.32794 6.56670 6.58121 7.04129 7.42550 7.43401 7.67601 7.88598 8.30370 8.42114 9.01541 9.35959 9.83529 10.62906 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002163 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.487891 B =12942.942725 C =13572.203859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.151 0.849 4 O -0.298 6.298 5 C 0.084 3.916 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.109 4.109 9 C -0.127 4.127 10 C 0.108 3.892 11 N -0.531 5.531 12 C 0.088 3.912 13 C 0.496 3.504 14 O -0.533 6.533 15 N -0.703 5.703 16 C 0.110 3.890 17 C 0.428 3.572 18 O -0.598 6.598 19 N -0.547 5.547 20 C -0.306 4.306 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.935 3.065 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 C 0.499 3.501 29 O -0.502 6.502 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.412 0.588 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.396 0.604 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.739 3.906 -15.954 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 H 0.168 0.832 4 O -0.212 6.212 5 C 0.037 3.963 6 C -0.128 4.128 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.147 4.147 10 C 0.013 3.987 11 N -0.255 5.255 12 C -0.037 4.037 13 C 0.279 3.721 14 O -0.410 6.410 15 N -0.358 5.358 16 C -0.017 4.017 17 C 0.213 3.787 18 O -0.485 6.485 19 N -0.182 5.182 20 C -0.436 4.436 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.197 1.197 28 C 0.287 3.713 29 O -0.376 6.376 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.250 0.750 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.230 0.770 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.349 4.506 -15.556 26.797 hybrid contribution 0.759 -0.533 0.997 1.361 sum -20.591 3.972 -14.559 25.528 Atomic orbital electron populations 1.22350 0.92404 1.03959 1.04642 1.22878 0.96418 0.97578 0.80763 0.83180 1.86291 1.79104 1.16186 1.39626 1.18571 1.02494 0.82585 0.92613 1.20529 1.01678 0.94344 0.96296 1.20986 1.00736 0.92958 0.98575 1.20985 0.99889 1.00266 0.91602 1.20712 1.03015 0.91235 0.99761 1.18068 1.03131 0.92669 0.84795 1.45139 1.62967 1.07479 1.09903 1.21511 0.92953 1.00077 0.89155 1.20728 0.90036 0.78942 0.82353 1.90730 1.68073 1.45342 1.36848 1.45605 1.07369 1.57028 1.25764 1.20962 0.80440 1.01672 0.98670 1.19695 0.83889 0.86661 0.88431 1.90492 1.53197 1.55358 1.49436 1.41788 1.04832 1.48546 1.23028 1.19685 0.91729 1.31528 1.00624 0.87688 1.25345 0.95573 0.97618 0.99173 1.69614 1.02523 1.44864 1.36407 0.85857 0.77351 0.79776 0.80898 1.19748 1.20827 1.19740 1.21450 0.77415 0.81510 0.90967 1.90780 1.48890 1.64622 1.33259 0.91503 0.89869 0.89578 0.84429 0.84931 0.85008 0.84965 0.86362 0.85770 0.75035 0.89785 0.89836 0.77015 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.29 37.16 0.35 -0.89 16 2 C 0.08 0.84 3.82 -27.84 -0.11 0.73 16 3 H 0.15 1.28 8.14 -51.93 -0.42 0.86 16 4 O -0.30 -3.41 10.18 -19.70 -0.20 -3.61 16 5 C 0.08 0.93 5.85 -39.09 -0.23 0.71 16 6 C -0.11 -0.95 10.00 -39.50 -0.39 -1.35 16 7 C -0.11 -0.84 10.04 -39.54 -0.40 -1.23 16 8 C -0.11 -0.85 10.04 -39.55 -0.40 -1.25 16 9 C -0.13 -1.21 9.36 -39.46 -0.37 -1.58 16 10 C 0.11 1.25 6.39 -83.49 -0.53 0.72 16 11 N -0.53 -6.79 2.21 -114.48 -0.25 -7.04 16 12 C 0.09 1.06 5.69 -5.19 -0.03 1.03 16 13 C 0.50 8.00 7.90 -10.98 -0.09 7.91 16 14 O -0.53 -10.61 16.43 5.55 0.09 -10.52 16 15 N -0.70 -11.61 5.53 -61.47 -0.34 -11.95 16 16 C 0.11 2.06 6.15 -5.19 -0.03 2.03 16 17 C 0.43 9.80 7.85 -10.98 -0.09 9.72 16 18 O -0.60 -15.13 15.24 5.54 0.08 -15.05 16 19 N -0.55 -13.63 5.29 -10.96 -0.06 -13.68 16 20 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 23 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 24 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 C 0.50 6.71 6.91 -10.81 -0.07 6.63 16 29 O -0.50 -8.13 16.76 5.55 0.09 -8.04 16 30 H 0.07 0.49 7.81 -51.93 -0.41 0.09 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.13 1.06 6.12 -52.49 -0.32 0.74 16 37 H 0.12 1.00 5.96 -51.92 -0.31 0.69 16 38 H 0.12 1.39 7.48 -51.93 -0.39 1.00 16 39 H 0.41 6.42 7.44 -40.82 -0.30 6.12 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 43 H 0.28 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -35.33 373.08 -6.83 -42.16 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -4.94 Total: 14.54 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: -2.63 Total: 15.29 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.07 Total: -55.90 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: 0.07 Total: -37.22 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.33 -6.83 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376200512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.351 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds