Wall clock time and date at job start Wed Apr 1 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.41351 * 2 1 4 4 O 1.42996 * 109.44200 * 240.08794 * 2 1 3 5 5 C 1.35986 * 116.71413 * 286.33928 * 4 2 1 6 6 C 1.38397 * 120.66815 * 147.15989 * 5 4 2 7 7 C 1.38310 * 119.87486 * 180.10400 * 6 5 4 8 8 C 1.38284 * 120.25897 * 359.97438 * 7 6 5 9 9 C 1.38287 * 120.19870 * 359.97342 * 8 7 6 10 10 C 1.38507 * 119.81559 * 0.02872 * 9 8 7 11 11 N 1.40214 * 120.73769 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.51024 * 15.46623 * 11 10 9 13 13 C 1.50700 * 109.47257 * 89.99626 * 12 11 10 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27849 * 13 12 11 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.50706 * 109.47174 * 179.97438 * 16 15 13 18 18 O 1.21295 * 119.99429 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00107 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99559 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00395 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99947 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99402 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00241 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47092 * 60.00064 * 24 22 20 26 26 H 1.48496 * 109.47069 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47105 * 299.99687 * 24 22 20 28 28 C 1.35091 * 118.98147 * 195.73143 * 11 10 9 29 29 O 1.21284 * 120.13588 * 181.39053 * 28 11 10 30 30 H 1.08995 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46537 * 299.91303 * 1 2 3 32 32 H 1.08993 * 109.47248 * 59.90942 * 1 2 3 33 33 H 1.08001 * 120.06101 * 0.07711 * 6 5 4 34 34 H 1.07996 * 119.86934 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.89770 * 179.97438 * 8 7 6 36 36 H 1.07997 * 120.08778 * 180.02562 * 9 8 7 37 37 H 1.09009 * 109.46700 * 329.99520 * 12 11 10 38 38 H 1.08998 * 109.46827 * 210.00094 * 12 11 10 39 39 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 40 40 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 41 41 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 42 42 H 0.96993 * 120.00302 * 0.02562 * 19 17 16 43 43 H 0.97004 * 119.99339 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 8 2.0060 -0.6724 -1.1688 5 6 1.8872 -2.0270 -1.1858 6 6 1.6581 -2.7007 -2.3728 7 6 1.5378 -4.0785 -2.3708 8 6 1.6462 -4.7858 -1.1874 9 6 1.8762 -4.1197 0.0024 10 6 1.9975 -2.7399 0.0070 11 7 2.2314 -2.0450 1.2021 12 6 2.6840 -2.7568 2.4000 13 6 4.1904 -2.7915 2.4245 14 8 4.8236 -2.2732 1.5293 15 7 4.8338 -3.4039 3.4382 16 6 6.2981 -3.4428 3.4589 17 6 6.7637 -4.1792 4.6886 18 8 5.9520 -4.6278 5.4705 19 7 8.0818 -4.3403 4.9191 20 6 8.5052 -5.0107 6.0375 21 1 7.7825 -5.4101 6.7337 22 6 9.8642 -5.1763 6.2754 23 7 10.7435 -4.6906 5.4280 24 14 10.4411 -6.0903 7.7989 25 1 9.9095 -7.4767 7.7753 26 1 11.9254 -6.1301 7.8198 27 1 9.9471 -5.3912 9.0123 28 6 2.0277 -0.7099 1.2336 29 8 2.2476 -0.0842 2.2490 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5125 0.8908 32 1 -0.3633 0.5152 -0.8891 33 1 1.5729 -2.1515 -3.2988 34 1 1.3594 -4.6042 -3.2972 35 1 1.5510 -5.8615 -1.1926 36 1 1.9610 -4.6738 0.9255 37 1 2.2972 -3.7758 2.3849 38 1 2.3178 -2.2422 3.2883 39 1 4.3273 -3.8186 4.1540 40 1 6.6606 -3.9564 2.5685 41 1 6.6886 -2.4253 3.4757 42 1 8.7308 -3.9819 4.2937 43 1 11.6921 -4.8066 5.5939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376200512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:30 Heat of formation + Delta-G solvation = -126.658550 kcal Electronic energy + Delta-G solvation = -29978.335007 eV Core-core repulsion = 25602.329711 eV Total energy + Delta-G solvation = -4376.005296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -42.86862 -41.06262 -40.12434 -39.82996 -38.66279 -36.75405 -36.28077 -35.39875 -33.41914 -33.06008 -31.41504 -31.33176 -29.85765 -28.50774 -26.45527 -25.25633 -24.59889 -23.53522 -21.72087 -21.44846 -20.36954 -20.31027 -20.09488 -18.93884 -18.59750 -17.56558 -17.32429 -17.05039 -16.98841 -16.67458 -16.50991 -16.35741 -16.20233 -15.84232 -15.74426 -15.48856 -15.19229 -15.05640 -14.79029 -14.21521 -14.02880 -13.87084 -13.80477 -13.56469 -13.50431 -13.19201 -13.07844 -12.90825 -12.88266 -12.49671 -12.20694 -12.18519 -12.15190 -11.93964 -11.58724 -11.16739 -11.01130 -10.60918 -10.33764 -10.12694 -9.66670 -8.91760 -8.53578 -6.04328 0.06119 0.29969 1.00885 1.27913 1.35173 1.38817 1.41517 1.52680 1.86748 2.00378 2.22405 2.29500 2.70761 2.85144 3.06207 3.13301 3.50562 3.60051 3.71853 3.76029 3.90650 3.98906 4.06413 4.15956 4.27531 4.34098 4.34687 4.36615 4.46620 4.56250 4.65127 4.71315 4.93349 5.01533 5.12867 5.24367 5.27772 5.35449 5.53542 5.70009 5.76704 5.87978 6.26673 6.31589 6.44345 6.51215 6.98686 7.00501 7.39893 7.89397 8.63115 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002163 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.487891 B =12942.942725 C =13572.203859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 H 0.160 0.840 4 O -0.310 6.310 5 C 0.061 3.939 6 C -0.114 4.114 7 C -0.105 4.105 8 C -0.109 4.109 9 C -0.135 4.135 10 C 0.077 3.923 11 N -0.534 5.534 12 C 0.091 3.909 13 C 0.497 3.503 14 O -0.573 6.573 15 N -0.700 5.700 16 C 0.123 3.877 17 C 0.434 3.566 18 O -0.621 6.621 19 N -0.559 5.559 20 C -0.338 4.338 21 H 0.088 0.912 22 C -0.011 4.011 23 N -0.917 5.917 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.488 3.512 29 O -0.543 6.543 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.157 0.843 38 H 0.132 0.868 39 H 0.418 0.582 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.398 0.602 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.936 2.634 -17.096 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.177 0.823 4 O -0.225 6.225 5 C 0.015 3.985 6 C -0.133 4.133 7 C -0.123 4.123 8 C -0.128 4.128 9 C -0.155 4.155 10 C -0.016 4.016 11 N -0.257 5.257 12 C -0.034 4.034 13 C 0.283 3.717 14 O -0.452 6.452 15 N -0.355 5.355 16 C -0.005 4.005 17 C 0.221 3.779 18 O -0.509 6.509 19 N -0.194 5.194 20 C -0.467 4.467 21 H 0.106 0.894 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.197 1.197 27 H -0.195 1.195 28 C 0.277 3.723 29 O -0.420 6.420 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.150 0.850 39 H 0.257 0.743 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.232 0.768 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.574 3.212 -16.733 28.282 hybrid contribution 1.086 -0.181 1.238 1.657 sum -21.487 3.031 -15.495 26.664 Atomic orbital electron populations 1.22300 0.89928 1.04126 1.05863 1.23045 0.98308 0.97312 0.79131 0.82304 1.86256 1.79703 1.16745 1.39842 1.18946 1.03585 0.82496 0.93445 1.20873 1.01094 0.95178 0.96136 1.21422 0.98657 0.92458 0.99780 1.21380 0.98659 1.01670 0.91055 1.21001 1.02744 0.90556 1.01165 1.18364 1.05229 0.93596 0.84455 1.45224 1.62430 1.07521 1.10515 1.21634 0.89714 1.02402 0.89671 1.21439 0.91654 0.77461 0.81140 1.90709 1.69319 1.46933 1.38283 1.45591 1.06353 1.57272 1.26253 1.20750 0.81997 1.01115 0.96684 1.20305 0.83096 0.85561 0.88978 1.90469 1.53686 1.56120 1.50636 1.41848 1.05595 1.49054 1.22891 1.19724 0.92179 1.33226 1.01598 0.89372 1.26174 0.95169 0.97946 1.01920 1.69686 1.02910 1.45364 1.37720 0.84904 0.77251 0.78522 0.77186 1.19253 1.19665 1.19490 1.22135 0.76803 0.81840 0.91496 1.90743 1.50998 1.65469 1.34814 0.91817 0.89308 0.87557 0.82728 0.81742 0.82338 0.83803 0.82596 0.84993 0.74342 0.88700 0.89588 0.76793 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.29 71.98 0.67 -1.50 16 2 C 0.08 1.64 3.82 29.87 0.11 1.75 16 3 H 0.16 2.78 8.14 -2.39 -0.02 2.76 16 4 O -0.31 -7.05 10.18 -93.39 -0.95 -8.00 16 5 C 0.06 1.31 5.85 22.59 0.13 1.45 16 6 C -0.11 -1.76 10.00 22.32 0.22 -1.54 16 7 C -0.10 -1.21 10.04 22.30 0.22 -0.99 16 8 C -0.11 -1.39 10.04 22.29 0.22 -1.16 16 9 C -0.13 -2.32 9.36 22.35 0.21 -2.11 16 10 C 0.08 1.72 6.39 38.14 0.24 1.96 16 11 N -0.53 -13.55 2.21 -634.32 -1.40 -14.95 16 12 C 0.09 2.12 5.69 85.63 0.49 2.61 16 13 C 0.50 15.94 7.90 87.66 0.69 16.64 16 14 O -0.57 -23.04 16.43 -3.04 -0.05 -23.09 16 15 N -0.70 -22.87 5.53 -466.79 -2.58 -25.45 16 16 C 0.12 4.58 6.15 85.64 0.53 5.11 16 17 C 0.43 20.06 7.85 87.66 0.69 20.74 16 18 O -0.62 -31.67 15.24 -3.08 -0.05 -31.72 16 19 N -0.56 -28.26 5.29 -306.97 -1.62 -29.88 16 20 C -0.34 -18.63 9.68 84.04 0.81 -17.81 16 21 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.06 13.05 21.67 0.28 -48.77 16 24 Si 1.00 41.70 29.55 68.60 2.03 43.72 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 C 0.49 13.38 6.91 87.63 0.61 13.98 16 29 O -0.54 -18.22 16.76 -3.04 -0.05 -18.27 16 30 H 0.06 0.88 7.81 -2.39 -0.02 0.86 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.14 1.98 6.12 -2.91 -0.02 1.96 16 37 H 0.16 2.35 5.96 -2.38 -0.01 2.34 16 38 H 0.13 2.90 7.48 -2.39 -0.02 2.89 16 39 H 0.42 12.80 7.44 -92.71 -0.69 12.11 16 40 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.40 19.50 7.90 -92.71 -0.73 18.76 16 43 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -77.53 373.08 1.60 -75.93 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.33 Total: 41.46 kcal Atomic # 6 Polarization: 32.70 SS G_CDS: 6.32 Total: 39.02 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -5.32 Total: -119.05 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -1.10 Total: -81.08 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -77.53 1.60 -75.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376200512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.725 kcal (2) G-P(sol) polarization free energy of solvation -77.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds