Wall clock time and date at job start Wed Apr 1 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 O 1.42997 * 109.44341 * 119.89809 * 2 1 3 5 5 C 1.35985 * 116.71878 * 166.44710 * 4 2 1 6 6 C 1.38390 * 120.67380 * 147.16331 * 5 4 2 7 7 C 1.38315 * 119.87554 * 180.12968 * 6 5 4 8 8 C 1.38281 * 120.25730 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.20277 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.80762 * 359.97438 * 9 8 7 11 11 N 1.40219 * 120.73405 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.50545 * 15.48398 * 11 10 9 13 13 C 1.50694 * 109.46953 * 90.00129 * 12 11 10 14 14 O 1.21277 * 120.00379 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99969 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00058 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47244 * 179.97438 * 16 15 13 18 18 O 1.21298 * 119.99618 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00341 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00150 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99869 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00021 * 180.02562 * 20 19 17 23 23 N 1.31421 * 120.00027 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00029 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47083 * 90.00300 * 24 22 20 26 26 H 1.48504 * 109.46973 * 210.00054 * 24 22 20 27 27 H 1.48496 * 109.47041 * 329.99832 * 24 22 20 28 28 C 1.35086 * 118.98010 * 195.50233 * 11 10 9 29 29 O 1.21294 * 120.13484 * 181.64156 * 28 11 10 30 30 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47267 * 299.93742 * 1 2 3 32 32 H 1.09001 * 109.47220 * 59.93413 * 1 2 3 33 33 H 1.08005 * 120.06431 * 0.11158 * 6 5 4 34 34 H 1.07998 * 119.87275 * 179.71611 * 7 6 5 35 35 H 1.08003 * 119.90083 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.09514 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.46846 * 209.99825 * 12 11 10 38 38 H 1.08995 * 109.47292 * 329.99800 * 12 11 10 39 39 H 0.96999 * 119.99945 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47406 * 299.99832 * 16 15 13 41 41 H 1.08995 * 109.47448 * 59.99953 * 16 15 13 42 42 H 0.96999 * 120.00062 * 359.97438 * 19 17 16 43 43 H 0.96994 * 119.99577 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3742 -1.3621 2.3711 8 6 6.0053 -1.6990 1.1877 9 6 5.3007 -1.6947 -0.0022 10 6 3.9587 -1.3521 -0.0064 11 7 3.2255 -1.3418 -1.2016 12 6 3.7471 -2.0044 -2.3997 13 6 3.2803 -3.4370 -2.4248 14 8 2.5813 -3.8629 -1.5299 15 7 3.6397 -4.2451 -3.4419 16 6 3.1855 -5.6377 -3.4666 17 6 3.7210 -6.3189 -4.6996 18 8 4.4135 -5.7017 -5.4811 19 7 3.4305 -7.6139 -4.9340 20 6 3.9181 -8.2338 -6.0554 21 1 4.5347 -7.6842 -6.7512 22 6 3.6181 -9.5687 -6.2973 23 7 4.0851 -10.1628 -7.3726 24 14 2.5510 -10.5191 -5.0942 25 1 1.1246 -10.3854 -5.4851 26 1 2.9377 -11.9527 -5.1152 27 1 2.7424 -9.9747 -3.7259 28 6 2.0312 -0.7114 -1.2314 29 8 1.3658 -0.7150 -2.2456 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5129 0.8906 32 1 -0.3634 0.5149 -0.8894 33 1 3.5448 -0.7554 3.2992 34 1 5.9306 -1.3635 3.2967 35 1 7.0517 -1.9664 1.1927 36 1 5.7952 -1.9586 -0.9253 37 1 3.3830 -1.4881 -3.2879 38 1 4.8366 -1.9774 -2.3847 39 1 4.1984 -3.9044 -4.1579 40 1 3.5494 -6.1544 -2.5786 41 1 2.0960 -5.6643 -3.4815 42 1 2.8770 -8.1077 -4.3089 43 1 3.8759 -11.0948 -7.5412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376200515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:43 Heat of formation + Delta-G solvation = -92.662969 kcal Electronic energy + Delta-G solvation = -29990.711267 eV Core-core repulsion = 25616.180130 eV Total energy + Delta-G solvation = -4374.531137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98518 -39.78982 -39.14982 -38.42521 -37.82309 -35.89038 -34.58805 -33.81973 -32.46493 -31.84703 -30.64324 -30.43972 -28.91078 -27.37152 -24.75498 -23.99895 -23.67229 -22.76411 -20.56443 -19.80264 -19.65466 -19.53462 -18.73792 -17.80318 -17.44044 -17.14434 -16.28049 -15.80096 -15.70575 -15.62935 -15.15047 -15.02292 -14.92310 -14.83437 -14.56047 -14.40092 -14.03776 -13.68384 -13.52108 -13.22843 -13.08835 -12.64953 -12.58691 -12.53137 -12.46827 -12.23616 -12.21203 -11.93485 -11.52603 -11.50639 -11.26249 -11.05021 -10.67058 -10.22437 -10.09747 -9.91531 -9.73517 -9.01481 -9.00302 -8.82566 -8.34168 -8.15870 -6.44092 -3.96853 0.76180 0.92931 1.92474 2.08086 2.57263 2.89338 2.97125 3.02132 3.09945 3.18564 3.40362 3.51312 3.61846 4.00734 4.25189 4.36504 4.46927 4.49058 4.58985 4.63863 4.73237 4.84145 4.91336 4.99516 5.08344 5.10657 5.25515 5.31470 5.39044 5.59154 5.62837 5.72136 5.75176 5.75507 5.82397 5.97619 6.12504 6.30273 6.43703 6.53916 7.00635 7.38018 7.41217 7.59340 7.96005 8.21415 8.41340 8.77859 9.25983 9.58755 10.67950 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.002341 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.486493 B =11956.141230 C =12527.532229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.103 0.897 4 O -0.300 6.300 5 C 0.082 3.918 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.108 4.108 9 C -0.126 4.126 10 C 0.106 3.894 11 N -0.533 5.533 12 C 0.089 3.911 13 C 0.497 3.503 14 O -0.533 6.533 15 N -0.703 5.703 16 C 0.108 3.892 17 C 0.438 3.562 18 O -0.579 6.579 19 N -0.575 5.575 20 C -0.311 4.311 21 H 0.122 0.878 22 C 0.046 3.954 23 N -0.873 5.873 24 Si 0.879 3.121 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.267 1.267 28 C 0.495 3.505 29 O -0.498 6.498 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.413 0.587 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.374 0.626 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 21.486 20.513 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.024 3.976 3 H 0.121 0.879 4 O -0.215 6.215 5 C 0.036 3.964 6 C -0.128 4.128 7 C -0.132 4.132 8 C -0.127 4.127 9 C -0.147 4.147 10 C 0.012 3.988 11 N -0.257 5.257 12 C -0.037 4.037 13 C 0.281 3.719 14 O -0.410 6.410 15 N -0.359 5.359 16 C -0.020 4.020 17 C 0.224 3.776 18 O -0.464 6.464 19 N -0.212 5.212 20 C -0.439 4.439 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.512 5.512 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.193 1.193 28 C 0.283 3.717 29 O -0.372 6.372 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.251 0.749 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.208 0.792 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.659 21.337 19.961 29.225 hybrid contribution -0.381 -1.032 0.170 1.114 sum -1.041 20.304 20.131 28.611 Atomic orbital electron populations 1.21729 0.88837 1.04732 1.03993 1.22633 0.98198 0.95888 0.80863 0.87910 1.86238 1.21591 1.74245 1.39432 1.18585 0.83398 1.01734 0.92671 1.20523 0.93582 1.02417 0.96264 1.20993 0.93717 0.99900 0.98609 1.20994 1.00313 0.99826 0.91587 1.20715 0.91276 1.02910 0.99775 1.18083 0.92554 1.03348 0.84799 1.45180 1.19508 1.51148 1.09881 1.21503 1.01431 0.91522 0.89202 1.20751 0.81108 0.87817 0.82255 1.90725 1.37353 1.75964 1.36952 1.45594 1.53446 1.11125 1.25695 1.20981 1.00295 0.82271 0.98467 1.19590 0.86458 0.83235 0.88364 1.90538 1.42306 1.64464 1.49052 1.42123 1.46363 1.09684 1.23060 1.19440 1.30303 0.94716 0.99455 0.86036 1.25069 0.97565 0.96448 0.96778 1.69619 1.43589 1.12669 1.25301 0.86673 0.81262 0.80674 0.80903 1.19352 1.19914 1.19257 1.21543 0.80012 0.79090 0.91028 1.90766 1.54258 1.58958 1.33167 0.90803 0.90146 0.88963 0.84396 0.84883 0.84961 0.84925 0.85684 0.86296 0.74886 0.89667 0.89707 0.79230 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.14 37.16 0.34 -0.82 16 2 C 0.08 0.84 3.69 -27.84 -0.10 0.74 16 3 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 4 O -0.30 -3.40 10.09 -19.69 -0.20 -3.60 16 5 C 0.08 0.91 6.44 -39.09 -0.25 0.66 16 6 C -0.11 -0.93 10.00 -39.50 -0.39 -1.32 16 7 C -0.11 -0.81 10.04 -39.54 -0.40 -1.21 16 8 C -0.11 -0.82 10.04 -39.55 -0.40 -1.22 16 9 C -0.13 -1.17 9.36 -39.47 -0.37 -1.54 16 10 C 0.11 1.21 6.39 -83.49 -0.53 0.68 16 11 N -0.53 -6.65 2.21 -114.48 -0.25 -6.91 16 12 C 0.09 1.02 5.68 -5.19 -0.03 0.99 16 13 C 0.50 7.65 7.90 -10.99 -0.09 7.56 16 14 O -0.53 -10.14 16.43 5.56 0.09 -10.05 16 15 N -0.70 -11.02 5.53 -61.48 -0.34 -11.36 16 16 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 17 C 0.44 9.57 7.85 -10.98 -0.09 9.49 16 18 O -0.58 -14.42 15.24 5.54 0.08 -14.34 16 19 N -0.57 -13.37 5.09 -10.96 -0.06 -13.43 16 20 C -0.31 -8.54 10.16 -14.94 -0.15 -8.69 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 22 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 23 N -0.87 -24.86 13.96 55.50 0.77 -24.09 16 24 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 C 0.50 6.50 7.37 -10.80 -0.08 6.42 16 29 O -0.50 -7.73 15.83 5.54 0.09 -7.64 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.74 7.86 -51.93 -0.41 0.33 16 33 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.13 1.02 6.12 -52.49 -0.32 0.70 16 37 H 0.13 1.34 7.49 -51.93 -0.39 0.95 16 38 H 0.12 0.96 5.96 -51.93 -0.31 0.65 16 39 H 0.41 6.14 7.44 -40.82 -0.30 5.84 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 43 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -36.17 369.77 -6.52 -42.70 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -4.90 Total: 14.10 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: -2.67 Total: 14.70 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.13 Total: -55.78 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: 0.06 Total: -35.62 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.17 -6.52 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376200515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.964 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds