Wall clock time and date at job start Wed Apr 1 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 O 1.42997 * 109.44341 * 119.89809 * 2 1 3 5 5 C 1.35985 * 116.71878 * 166.44710 * 4 2 1 6 6 C 1.38390 * 120.67380 * 147.16331 * 5 4 2 7 7 C 1.38315 * 119.87554 * 180.12968 * 6 5 4 8 8 C 1.38281 * 120.25730 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.20277 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.80762 * 359.97438 * 9 8 7 11 11 N 1.40219 * 120.73405 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.50545 * 15.48398 * 11 10 9 13 13 C 1.50694 * 109.46953 * 90.00129 * 12 11 10 14 14 O 1.21277 * 120.00379 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99969 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00058 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47244 * 179.97438 * 16 15 13 18 18 O 1.21298 * 119.99618 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00341 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00150 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99869 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00021 * 180.02562 * 20 19 17 23 23 N 1.31421 * 120.00027 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00029 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47083 * 90.00300 * 24 22 20 26 26 H 1.48504 * 109.46973 * 210.00054 * 24 22 20 27 27 H 1.48496 * 109.47041 * 329.99832 * 24 22 20 28 28 C 1.35086 * 118.98010 * 195.50233 * 11 10 9 29 29 O 1.21294 * 120.13484 * 181.64156 * 28 11 10 30 30 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47267 * 299.93742 * 1 2 3 32 32 H 1.09001 * 109.47220 * 59.93413 * 1 2 3 33 33 H 1.08005 * 120.06431 * 0.11158 * 6 5 4 34 34 H 1.07998 * 119.87275 * 179.71611 * 7 6 5 35 35 H 1.08003 * 119.90083 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.09514 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.46846 * 209.99825 * 12 11 10 38 38 H 1.08995 * 109.47292 * 329.99800 * 12 11 10 39 39 H 0.96999 * 119.99945 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47406 * 299.99832 * 16 15 13 41 41 H 1.08995 * 109.47448 * 59.99953 * 16 15 13 42 42 H 0.96999 * 120.00062 * 359.97438 * 19 17 16 43 43 H 0.96994 * 119.99577 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3742 -1.3621 2.3711 8 6 6.0053 -1.6990 1.1877 9 6 5.3007 -1.6947 -0.0022 10 6 3.9587 -1.3521 -0.0064 11 7 3.2255 -1.3418 -1.2016 12 6 3.7471 -2.0044 -2.3997 13 6 3.2803 -3.4370 -2.4248 14 8 2.5813 -3.8629 -1.5299 15 7 3.6397 -4.2451 -3.4419 16 6 3.1855 -5.6377 -3.4666 17 6 3.7210 -6.3189 -4.6996 18 8 4.4135 -5.7017 -5.4811 19 7 3.4305 -7.6139 -4.9340 20 6 3.9181 -8.2338 -6.0554 21 1 4.5347 -7.6842 -6.7512 22 6 3.6181 -9.5687 -6.2973 23 7 4.0851 -10.1628 -7.3726 24 14 2.5510 -10.5191 -5.0942 25 1 1.1246 -10.3854 -5.4851 26 1 2.9377 -11.9527 -5.1152 27 1 2.7424 -9.9747 -3.7259 28 6 2.0312 -0.7114 -1.2314 29 8 1.3658 -0.7150 -2.2456 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5129 0.8906 32 1 -0.3634 0.5149 -0.8894 33 1 3.5448 -0.7554 3.2992 34 1 5.9306 -1.3635 3.2967 35 1 7.0517 -1.9664 1.1927 36 1 5.7952 -1.9586 -0.9253 37 1 3.3830 -1.4881 -3.2879 38 1 4.8366 -1.9774 -2.3847 39 1 4.1984 -3.9044 -4.1579 40 1 3.5494 -6.1544 -2.5786 41 1 2.0960 -5.6643 -3.4815 42 1 2.8770 -8.1077 -4.3089 43 1 3.8759 -11.0948 -7.5412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376200515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:39 Heat of formation + Delta-G solvation = -120.465462 kcal Electronic energy + Delta-G solvation = -29991.916874 eV Core-core repulsion = 25616.180130 eV Total energy + Delta-G solvation = -4375.736743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -42.80869 -41.10255 -40.19118 -39.90336 -38.64989 -36.78030 -36.32538 -35.43087 -33.87252 -33.18166 -31.47939 -31.24610 -29.87721 -28.66926 -26.34952 -25.07301 -24.38612 -23.51336 -21.75047 -21.53834 -20.68085 -20.45279 -20.31061 -18.98246 -18.34607 -18.11645 -17.41783 -17.30445 -16.96201 -16.62736 -16.50866 -16.33700 -15.90203 -15.82393 -15.59906 -15.50566 -15.07550 -15.00087 -14.73979 -14.34180 -14.26264 -14.06370 -13.92611 -13.81721 -13.33178 -13.22755 -13.08319 -12.97348 -12.84344 -12.47894 -12.24395 -12.16765 -12.03261 -11.94835 -11.61996 -11.16984 -11.02477 -10.70984 -10.38966 -10.30351 -9.67567 -8.92699 -8.48610 -6.10680 0.04945 0.29125 1.00118 1.27299 1.28070 1.31102 1.37562 1.40829 1.74295 1.98634 2.16989 2.17333 2.70695 2.81520 2.84558 3.07321 3.50008 3.60155 3.67380 3.81473 3.87270 3.93038 3.99131 4.06768 4.27539 4.31498 4.32105 4.36694 4.48125 4.58466 4.68787 4.76440 4.93687 5.08067 5.10633 5.23831 5.26666 5.44640 5.52887 5.70284 5.75682 5.84548 6.25805 6.30902 6.44545 6.51795 6.74338 6.97784 7.25107 7.72753 8.67680 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.002341 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.486493 B =11956.141230 C =12527.532229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 H 0.131 0.869 4 O -0.312 6.312 5 C 0.058 3.942 6 C -0.113 4.113 7 C -0.105 4.105 8 C -0.109 4.109 9 C -0.134 4.134 10 C 0.076 3.924 11 N -0.536 5.536 12 C 0.090 3.910 13 C 0.499 3.501 14 O -0.571 6.571 15 N -0.703 5.703 16 C 0.119 3.881 17 C 0.446 3.554 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.066 0.934 22 C -0.006 4.006 23 N -0.924 5.924 24 Si 0.957 3.043 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.234 1.234 28 C 0.484 3.516 29 O -0.536 6.536 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.145 0.855 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.417 0.583 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.391 0.609 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 22.033 23.931 32.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.024 3.976 3 H 0.148 0.852 4 O -0.227 6.227 5 C 0.012 3.988 6 C -0.132 4.132 7 C -0.123 4.123 8 C -0.127 4.127 9 C -0.154 4.154 10 C -0.017 4.017 11 N -0.260 5.260 12 C -0.035 4.035 13 C 0.285 3.715 14 O -0.450 6.450 15 N -0.358 5.358 16 C -0.009 4.009 17 C 0.233 3.767 18 O -0.497 6.497 19 N -0.217 5.217 20 C -0.460 4.460 21 H 0.084 0.916 22 C -0.207 4.207 23 N -0.563 5.563 24 Si 0.777 3.223 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.158 1.158 28 C 0.273 3.727 29 O -0.412 6.412 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.256 0.744 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.227 0.773 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.495 21.912 23.411 32.070 hybrid contribution -0.282 -1.107 -0.883 1.444 sum -0.777 20.805 22.528 30.675 Atomic orbital electron populations 1.21743 0.88081 1.03622 1.05419 1.22825 0.98771 0.96656 0.79381 0.85164 1.86206 1.22212 1.74717 1.39611 1.18977 0.83460 1.02822 0.93549 1.20867 0.94241 1.01957 0.96102 1.21427 0.93228 0.97859 0.99812 1.21390 1.01516 0.98759 0.91053 1.21002 0.90664 1.02566 1.01163 1.18379 0.93477 1.05367 0.84479 1.45273 1.19544 1.50678 1.10494 1.21635 1.03493 0.88784 0.89605 1.21376 0.80040 0.88953 0.81120 1.90706 1.39028 1.76934 1.38284 1.45614 1.53529 1.10525 1.26100 1.20857 1.00750 0.83026 0.96251 1.20395 0.84730 0.82657 0.88884 1.90528 1.43391 1.65204 1.50595 1.41937 1.47068 1.10262 1.22447 1.19034 1.31117 0.95350 1.00529 0.91634 1.26042 0.98741 0.97024 0.98856 1.69775 1.45367 1.13438 1.27748 0.85467 0.78867 0.78578 0.79357 1.18277 1.19611 1.15761 1.22194 0.79960 0.78998 0.91542 1.90731 1.55291 1.60610 1.34554 0.93107 0.87576 0.88622 0.82704 0.81718 0.82318 0.83747 0.85009 0.82698 0.74383 0.87751 0.88526 0.77310 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.14 71.98 0.66 -1.55 16 2 C 0.08 1.62 3.69 29.87 0.11 1.73 16 3 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 4 O -0.31 -6.86 10.09 -93.38 -0.94 -7.80 16 5 C 0.06 1.20 6.44 22.58 0.15 1.35 16 6 C -0.11 -1.66 10.00 22.32 0.22 -1.44 16 7 C -0.10 -1.14 10.04 22.30 0.22 -0.91 16 8 C -0.11 -1.29 10.04 22.29 0.22 -1.07 16 9 C -0.13 -2.19 9.36 22.34 0.21 -1.98 16 10 C 0.08 1.64 6.39 38.14 0.24 1.89 16 11 N -0.54 -13.06 2.21 -634.32 -1.40 -14.46 16 12 C 0.09 1.98 5.68 85.63 0.49 2.47 16 13 C 0.50 14.89 7.90 87.65 0.69 15.59 16 14 O -0.57 -21.33 16.43 -3.02 -0.05 -21.38 16 15 N -0.70 -21.25 5.53 -466.80 -2.58 -23.83 16 16 C 0.12 3.97 6.15 85.64 0.53 4.50 16 17 C 0.45 19.39 7.85 87.66 0.69 20.08 16 18 O -0.61 -31.03 15.24 -3.08 -0.05 -31.07 16 19 N -0.58 -26.64 5.09 -306.98 -1.56 -28.20 16 20 C -0.33 -18.77 10.16 84.04 0.85 -17.92 16 21 H 0.07 4.37 7.39 -2.91 -0.02 4.34 16 22 C -0.01 -0.34 5.50 84.92 0.47 0.12 16 23 N -0.92 -54.13 13.96 21.66 0.30 -53.83 16 24 Si 0.96 38.32 27.74 68.60 1.90 40.22 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 27 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 28 C 0.48 12.73 7.37 87.63 0.65 13.38 16 29 O -0.54 -16.98 15.83 -3.07 -0.05 -17.03 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 1.17 8.14 -2.38 -0.02 1.16 16 32 H 0.10 1.52 7.86 -2.39 -0.02 1.50 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 35 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.14 1.85 6.12 -2.91 -0.02 1.84 16 37 H 0.13 2.74 7.49 -2.39 -0.02 2.73 16 38 H 0.16 2.18 5.96 -2.39 -0.01 2.17 16 39 H 0.42 12.11 7.44 -92.71 -0.69 11.42 16 40 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 43 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -83.12 369.77 1.78 -81.33 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: -0.19 Total: 39.82 kcal Atomic # 6 Polarization: 29.83 SS G_CDS: 6.40 Total: 36.23 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -5.24 Total: -120.32 kcal Atomic # 8 Polarization: -76.19 SS G_CDS: -1.09 Total: -77.28 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -83.12 1.78 -81.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376200515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.132 kcal (2) G-P(sol) polarization free energy of solvation -83.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds