Wall clock time and date at job start Wed Apr 1 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46897 * 2 1 4 4 C 1.50700 * 109.47173 * 240.00442 * 2 1 3 5 5 H 1.08001 * 119.99868 * 239.99739 * 4 2 1 6 6 C 1.37873 * 120.00088 * 59.99999 * 4 2 1 7 7 N 1.31513 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99718 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47263 * 89.99938 * 8 6 4 10 10 H 1.48504 * 109.46847 * 209.99384 * 8 6 4 11 11 H 1.48501 * 109.47235 * 329.99629 * 8 6 4 12 12 N 1.46500 * 109.47310 * 120.00158 * 2 1 3 13 13 C 1.34782 * 119.99846 * 275.00317 * 12 2 1 14 14 O 1.21363 * 119.99730 * 359.97438 * 13 12 2 15 15 C 1.49329 * 120.00080 * 179.97438 * 13 12 2 16 16 O 1.21388 * 119.99671 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00139 * 179.97438 * 15 13 12 18 18 C 1.39853 * 120.00186 * 175.38360 * 17 15 13 19 19 C 1.38935 * 119.98524 * 214.83116 * 18 17 15 20 20 C 1.38215 * 120.17879 * 179.78937 * 19 18 17 21 21 C 1.38428 * 119.97737 * 0.43400 * 20 19 18 22 22 C 1.39444 * 119.99068 * 359.83902 * 21 20 19 23 23 C 1.38422 * 120.05421 * 359.93516 * 22 21 20 24 24 N 1.40213 * 119.26752 * 179.91690 * 22 21 20 25 25 C 1.35081 * 118.99918 * 15.51536 * 24 22 21 26 26 O 1.21297 * 120.13166 * 181.62201 * 25 24 22 27 27 C 1.50756 * 119.73644 * 1.63954 * 25 24 22 28 28 H 1.08994 * 109.44948 * 208.61456 * 27 25 24 29 29 C 1.53008 * 109.41639 * 88.69682 * 27 25 24 30 30 O 1.36062 * 120.58359 * 179.85915 * 21 20 19 31 31 H 1.08997 * 109.47380 * 299.99884 * 1 2 3 32 32 H 1.08996 * 109.46815 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47223 * 59.99782 * 1 2 3 34 34 H 0.97003 * 119.99813 * 180.02562 * 7 6 4 35 35 H 0.96995 * 120.00212 * 94.99635 * 12 2 1 36 36 H 0.96994 * 119.99706 * 355.38841 * 17 15 13 37 37 H 1.08002 * 119.90510 * 0.02562 * 19 18 17 38 38 H 1.08003 * 120.01036 * 180.22923 * 20 19 18 39 39 H 1.08000 * 120.12093 * 179.97438 * 23 22 21 40 40 H 0.97005 * 120.50010 * 195.49251 * 24 22 21 41 41 H 1.09001 * 109.46709 * 299.85663 * 29 27 25 42 42 H 1.08998 * 109.46649 * 59.85659 * 29 27 25 43 43 H 1.08999 * 109.47092 * 179.85760 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3429 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7581 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3572 14 8 1.8588 1.1594 2.4115 15 6 2.6443 -0.7223 3.5766 16 8 2.9322 -1.9003 3.5222 17 7 2.7735 -0.0499 4.7374 18 6 3.1463 -0.7295 5.9015 19 6 2.6269 -0.3396 7.1297 20 6 2.9893 -1.0111 8.2821 21 6 3.8790 -2.0695 8.2151 22 6 4.4066 -2.4598 6.9847 23 6 4.0403 -1.7906 5.8297 24 7 5.3078 -3.5328 6.9347 25 6 5.4041 -4.3574 8.0002 26 8 6.1980 -5.2744 7.9907 27 6 4.5207 -4.1337 9.2012 28 1 5.0262 -4.4964 10.0961 29 6 3.2065 -4.8947 9.0147 30 8 4.2464 -2.7374 9.3421 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 0.7082 1.1610 -3.4844 35 1 2.2490 -1.6317 1.1526 36 1 2.6078 0.9054 4.7655 37 1 1.9352 0.4881 7.1835 38 1 2.5810 -0.7081 9.2349 39 1 4.4486 -2.0917 4.8763 40 1 5.8537 -3.6808 6.1466 41 1 2.7001 -4.5314 8.1204 42 1 3.4152 -5.9591 8.9071 43 1 2.5681 -4.7356 9.8837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438808976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:13 Heat of formation + Delta-G solvation = -106.169158 kcal Electronic energy + Delta-G solvation = -29616.344814 eV Core-core repulsion = 25241.228005 eV Total energy + Delta-G solvation = -4375.116809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97328 -40.76151 -39.21537 -38.50050 -37.61123 -35.88612 -35.19976 -34.31830 -32.49465 -32.09066 -30.47409 -29.33497 -28.84282 -25.45559 -25.30821 -25.03016 -23.58918 -23.22935 -21.10151 -19.86925 -19.79893 -19.30160 -18.91743 -17.99303 -17.24031 -16.67092 -16.44237 -16.32172 -15.80373 -15.72095 -15.50531 -15.21187 -15.08600 -14.72950 -14.34276 -14.19889 -13.68449 -13.62358 -13.45512 -13.25436 -13.11864 -12.91932 -12.58449 -12.55312 -12.08646 -11.86917 -11.60472 -11.46624 -11.25138 -11.13638 -11.04887 -10.85927 -10.48168 -10.42638 -10.32634 -10.08740 -9.24867 -9.18087 -8.79527 -8.69261 -8.22411 -8.05955 -6.23097 -4.33037 0.61253 0.85125 1.65557 1.93846 2.34935 2.48838 2.91006 3.19957 3.27089 3.28842 3.30089 3.52550 3.61335 3.94255 4.25775 4.29748 4.30753 4.42692 4.75486 4.80493 4.89548 4.96690 5.06949 5.10180 5.14579 5.35964 5.40251 5.53952 5.66336 5.88727 5.93950 6.13247 6.34394 6.45308 6.64873 6.76756 6.90745 6.93450 6.95833 7.12450 7.30734 7.39119 7.55178 7.68067 7.78111 7.98605 8.33797 8.52026 8.77183 9.34335 10.82881 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002157 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.379757 B =12975.637580 C =14017.742031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.666 5.666 13 C 0.495 3.505 14 O -0.533 6.533 15 C 0.509 3.491 16 O -0.505 6.505 17 N -0.649 5.649 18 C 0.160 3.840 19 C -0.131 4.131 20 C -0.086 4.086 21 C 0.061 3.939 22 C 0.111 3.889 23 C -0.126 4.126 24 N -0.655 5.655 25 C 0.497 3.503 26 O -0.512 6.512 27 C 0.079 3.921 28 H 0.150 0.850 29 C -0.178 4.178 30 O -0.298 6.298 31 H 0.017 0.983 32 H 0.030 0.970 33 H 0.095 0.905 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.426 0.574 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.418 0.582 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -4.949 23.668 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.315 5.315 13 C 0.273 3.727 14 O -0.412 6.412 15 C 0.292 3.708 16 O -0.379 6.379 17 N -0.297 5.297 18 C 0.064 3.936 19 C -0.152 4.152 20 C -0.106 4.106 21 C 0.014 3.986 22 C 0.015 3.985 23 C -0.148 4.148 24 N -0.302 5.302 25 C 0.283 3.717 26 O -0.387 6.387 27 C 0.020 3.980 28 H 0.168 0.832 29 C -0.236 4.236 30 O -0.213 6.213 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.265 0.735 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.258 0.742 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.733 -5.290 23.736 24.604 hybrid contribution 0.562 -0.618 -1.483 1.702 sum 4.295 -5.908 22.253 23.422 Atomic orbital electron populations 1.22105 0.97763 0.99607 1.01275 1.19000 0.91487 0.94142 0.79267 0.92724 1.21178 1.32921 1.13519 0.90003 0.91749 1.24874 0.94668 0.94902 0.99113 1.69886 1.35609 1.22321 1.24150 0.86390 0.79273 0.79265 0.81880 1.20426 1.20982 1.19749 1.46526 1.61141 1.14551 1.09294 1.19603 0.81366 0.87304 0.84441 1.90742 1.50761 1.15135 1.84574 1.21041 0.77795 0.87037 0.84892 1.90724 1.46877 1.15702 1.84559 1.43225 1.66851 1.13256 1.06324 1.17439 0.95242 0.94812 0.86075 1.20827 1.01636 1.02562 0.90178 1.20281 0.95600 0.95445 0.99272 1.18535 0.99322 0.96926 0.83792 1.17802 0.95069 0.91838 0.93808 1.20746 0.98588 0.97772 0.97725 1.43735 1.40129 1.26806 1.19500 1.21493 0.83952 0.81541 0.84689 1.90812 1.36493 1.30297 1.81054 1.22867 0.96344 0.81130 0.97689 0.83238 1.22353 0.95594 1.01243 1.04383 1.86317 1.84219 1.20433 1.30341 0.96427 0.95077 0.88665 0.92392 0.76315 0.73487 0.84051 0.83732 0.82993 0.74236 0.91297 0.89933 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.26 37.16 0.34 -3.16 16 2 C 0.26 6.34 2.56 -69.08 -0.18 6.16 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.67 -13.52 5.06 -55.40 -0.28 -13.80 16 13 C 0.49 9.20 7.85 -11.64 -0.09 9.10 16 14 O -0.53 -10.99 16.14 5.49 0.09 -10.90 16 15 C 0.51 7.76 7.73 -11.64 -0.09 7.67 16 16 O -0.51 -8.25 13.91 5.46 0.08 -8.18 16 17 N -0.65 -7.69 5.32 -10.27 -0.05 -7.74 16 18 C 0.16 1.71 6.30 -83.68 -0.53 1.18 16 19 C -0.13 -1.07 9.96 -39.33 -0.39 -1.46 16 20 C -0.09 -0.68 9.99 -39.52 -0.39 -1.07 16 21 C 0.06 0.58 5.85 -39.06 -0.23 0.35 16 22 C 0.11 1.15 6.54 -83.51 -0.55 0.61 16 23 C -0.13 -1.42 8.59 -39.25 -0.34 -1.76 16 24 N -0.66 -6.64 5.47 -9.67 -0.05 -6.70 16 25 C 0.50 5.28 7.19 -10.82 -0.08 5.20 16 26 O -0.51 -6.87 17.95 5.54 0.10 -6.77 16 27 C 0.08 0.63 3.81 -27.85 -0.11 0.53 16 28 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 29 C -0.18 -1.18 9.30 37.16 0.35 -0.84 16 30 O -0.30 -2.69 10.18 -19.94 -0.20 -2.89 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 35 H 0.40 7.59 8.01 -40.82 -0.33 7.26 16 36 H 0.43 4.37 8.30 -40.82 -0.34 4.03 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 39 H 0.15 1.89 6.22 -52.49 -0.33 1.56 16 40 H 0.42 3.83 8.89 -40.82 -0.36 3.47 16 41 H 0.07 0.55 7.80 -51.93 -0.41 0.14 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -30.99 370.91 -6.77 -37.76 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.97 Total: 11.65 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -2.67 Total: 10.10 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.24 Total: -51.49 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: 0.06 Total: -28.74 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.99 -6.77 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438808976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.410 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds