Wall clock time and date at job start Wed Apr 1 2020 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47028 * 2 1 4 4 C 1.50701 * 109.46686 * 119.99721 * 2 1 3 5 5 H 1.07996 * 120.00247 * 120.00543 * 4 2 1 6 6 C 1.37884 * 119.99955 * 299.99712 * 4 2 1 7 7 N 1.31515 * 119.99583 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00057 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47280 * 89.99815 * 8 6 4 10 10 H 1.48501 * 109.47082 * 210.00172 * 8 6 4 11 11 H 1.48502 * 109.47256 * 329.99848 * 8 6 4 12 12 N 1.46501 * 109.47076 * 239.99560 * 2 1 3 13 13 C 1.34773 * 119.99593 * 85.00160 * 12 2 1 14 14 O 1.21358 * 120.00546 * 359.97438 * 13 12 2 15 15 C 1.49340 * 119.99504 * 179.97438 * 13 12 2 16 16 O 1.21383 * 120.00013 * 359.97438 * 15 13 12 17 17 N 1.34772 * 119.99905 * 179.97438 * 15 13 12 18 18 C 1.39859 * 120.00075 * 184.61051 * 17 15 13 19 19 C 1.38942 * 119.97918 * 144.89434 * 18 17 15 20 20 C 1.38210 * 120.17834 * 179.97438 * 19 18 17 21 21 C 1.38437 * 119.97329 * 0.02562 * 20 19 18 22 22 C 1.39439 * 119.99171 * 0.02562 * 21 20 19 23 23 C 1.38417 * 120.05522 * 359.97438 * 22 21 20 24 24 N 1.40224 * 119.26850 * 179.97438 * 22 21 20 25 25 C 1.35078 * 118.99854 * 15.49845 * 24 22 21 26 26 O 1.21286 * 120.13007 * 181.61913 * 25 24 22 27 27 C 1.50754 * 119.73896 * 1.89405 * 25 24 22 28 28 H 1.08993 * 109.44951 * 88.47340 * 27 25 24 29 29 C 1.52995 * 109.44338 * 208.37750 * 27 25 24 30 30 O 1.36064 * 120.58176 * 180.02562 * 21 20 19 31 31 H 1.08996 * 109.47226 * 300.00563 * 1 2 3 32 32 H 1.09002 * 109.47018 * 60.00395 * 1 2 3 33 33 H 1.09002 * 109.47480 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99419 * 180.02562 * 7 6 4 35 35 H 0.96996 * 119.99654 * 264.99982 * 12 2 1 36 36 H 0.97006 * 119.99596 * 4.61712 * 17 15 13 37 37 H 1.08003 * 119.90716 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.01646 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.11833 * 180.02562 * 23 22 21 40 40 H 0.96998 * 120.49484 * 195.47407 * 24 22 21 41 41 H 1.09009 * 109.47377 * 60.00144 * 29 27 25 42 42 H 1.09004 * 109.47233 * 179.97438 * 29 27 25 43 43 H 1.09001 * 109.47485 * 300.00059 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6247 1.2793 2.6541 9 1 -0.8028 0.8730 2.6997 10 1 0.9759 1.9954 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8580 1.1590 -2.4118 15 6 2.6454 -0.7223 -3.5762 16 8 2.9349 -1.8999 -3.5214 17 7 2.7736 -0.0502 -4.7373 18 6 3.1476 -0.7298 -5.9011 19 6 2.6232 -0.3447 -7.1288 20 6 2.9904 -1.0131 -8.2815 21 6 3.8825 -2.0695 -8.2141 22 6 4.4098 -2.4591 -6.9835 23 6 4.0424 -1.7901 -5.8288 24 7 5.3118 -3.5315 -6.9327 25 6 5.8905 -3.9552 -8.0773 26 8 6.6512 -4.8997 -8.0616 27 6 5.5921 -3.2454 -9.3734 28 1 6.2947 -2.4230 -9.5069 29 6 5.7332 -4.2289 -10.5368 30 8 4.2528 -2.7358 -9.3412 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.9032 -0.5276 4.4376 35 1 2.2490 -1.6318 -1.1524 36 1 2.6066 0.9049 -4.7658 37 1 1.9275 0.4796 -7.1825 38 1 2.5808 -0.7118 -9.2344 39 1 4.4504 -2.0907 -4.8751 40 1 5.5172 -3.9624 -6.0883 41 1 5.0318 -5.0526 -10.4035 42 1 5.5171 -3.7163 -11.4742 43 1 6.7509 -4.6187 -10.5618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438808979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:17 Heat of formation + Delta-G solvation = -96.258559 kcal Electronic energy + Delta-G solvation = -29464.915668 eV Core-core repulsion = 25090.228615 eV Total energy + Delta-G solvation = -4374.687053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92010 -40.84738 -39.32390 -38.58480 -37.66376 -35.99783 -35.38826 -34.36984 -32.50438 -32.23651 -30.51287 -30.14426 -28.86379 -25.49368 -25.36756 -25.03669 -23.60770 -23.08524 -21.15217 -19.98682 -19.93357 -19.38829 -19.05067 -17.99227 -17.64516 -16.98116 -16.62532 -16.39001 -15.88589 -15.74462 -15.45990 -15.17286 -14.92431 -14.86724 -14.45140 -14.26175 -13.89593 -13.73084 -13.44089 -13.35973 -13.07069 -13.01209 -12.70760 -12.65605 -12.32819 -12.00539 -11.88157 -11.81661 -11.48597 -11.42233 -11.29494 -10.90773 -10.51725 -10.30294 -10.12420 -9.80107 -9.38371 -9.33171 -8.89315 -8.83029 -8.46542 -8.09639 -6.29340 -4.33796 0.56596 0.81619 1.55070 1.91286 2.28821 2.43021 2.81801 3.16076 3.22516 3.28649 3.30340 3.46431 3.53335 3.83443 4.22361 4.25679 4.27516 4.41045 4.71837 4.77610 4.79492 4.87184 5.04157 5.13263 5.19829 5.31817 5.40776 5.56888 5.64965 5.84490 5.89253 6.11389 6.15317 6.19824 6.30314 6.38112 6.42789 6.64504 6.78519 6.89181 6.98176 7.04200 7.31722 7.38175 7.57571 7.92615 8.30511 8.40570 8.70240 9.28650 10.82515 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.002061 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.799829 B =13583.774172 C =14517.267162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.540 4.540 5 H 0.083 0.917 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.886 3.114 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.262 1.262 12 N -0.659 5.659 13 C 0.498 3.502 14 O -0.535 6.535 15 C 0.510 3.490 16 O -0.501 6.501 17 N -0.649 5.649 18 C 0.159 3.841 19 C -0.130 4.130 20 C -0.086 4.086 21 C 0.061 3.939 22 C 0.111 3.889 23 C -0.125 4.125 24 N -0.657 5.657 25 C 0.493 3.507 26 O -0.507 6.507 27 C 0.077 3.923 28 H 0.105 0.895 29 C -0.135 4.135 30 O -0.300 6.300 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.269 0.731 35 H 0.409 0.591 36 H 0.426 0.574 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.419 0.581 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -0.018 -27.444 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.308 5.308 13 C 0.276 3.724 14 O -0.413 6.413 15 C 0.293 3.707 16 O -0.374 6.374 17 N -0.296 5.296 18 C 0.063 3.937 19 C -0.152 4.152 20 C -0.106 4.106 21 C 0.014 3.986 22 C 0.015 3.985 23 C -0.147 4.147 24 N -0.304 5.304 25 C 0.280 3.720 26 O -0.381 6.381 27 C 0.018 3.982 28 H 0.123 0.877 29 C -0.192 4.192 30 O -0.215 6.215 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.265 0.735 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.915 -0.579 -27.449 27.733 hybrid contribution -0.407 0.555 1.006 1.219 sum 3.507 -0.025 -26.443 26.674 Atomic orbital electron populations 1.22472 0.98634 1.01356 0.99671 1.19331 0.90600 0.94792 0.82070 0.92758 1.20981 1.33813 1.14768 0.88258 0.89876 1.24829 0.95441 0.96751 0.95432 1.69862 1.44438 1.39942 0.98108 0.86875 0.80579 0.83428 0.77613 1.20155 1.21974 1.18637 1.46146 1.61271 1.14819 1.08605 1.19638 0.81047 0.87211 0.84487 1.90737 1.50755 1.15167 1.84684 1.20857 0.78052 0.87021 0.84767 1.90743 1.46605 1.15614 1.84448 1.43188 1.66836 1.13261 1.06327 1.17423 0.95332 0.94888 0.86031 1.20796 1.01506 1.02607 0.90248 1.20265 0.98513 0.92425 0.99372 1.18561 1.00669 0.95771 0.83610 1.17807 0.95369 0.91493 0.93839 1.20751 0.98855 0.97070 0.98052 1.43769 1.42500 1.32619 1.11498 1.21543 0.79986 0.84347 0.86139 1.90796 1.34641 1.26633 1.86080 1.22688 0.84142 0.97701 0.93682 0.87734 1.21718 1.04289 0.97878 0.95356 1.86354 1.29188 1.69804 1.36173 0.92986 0.94336 0.92418 0.92102 0.75530 0.73514 0.84035 0.83697 0.82929 0.74105 0.90998 0.90095 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.96 37.16 0.33 -3.10 16 2 C 0.23 5.31 2.15 -69.08 -0.15 5.16 16 3 H 0.05 1.32 6.64 -51.93 -0.34 0.97 16 4 C -0.54 -14.15 9.31 -34.44 -0.32 -14.47 16 5 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 8 Si 0.89 20.78 24.37 -169.99 -4.14 16.64 16 9 H -0.27 -6.24 6.87 56.52 0.39 -5.86 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.26 -5.99 6.53 56.52 0.37 -5.63 16 12 N -0.66 -12.72 5.06 -55.40 -0.28 -13.00 16 13 C 0.50 8.69 7.85 -11.64 -0.09 8.60 16 14 O -0.53 -10.22 16.14 5.49 0.09 -10.13 16 15 C 0.51 7.42 7.73 -11.64 -0.09 7.33 16 16 O -0.50 -7.94 13.90 5.47 0.08 -7.87 16 17 N -0.65 -7.25 5.32 -10.26 -0.05 -7.30 16 18 C 0.16 1.63 6.30 -83.68 -0.53 1.11 16 19 C -0.13 -1.02 9.96 -39.33 -0.39 -1.41 16 20 C -0.09 -0.66 9.99 -39.52 -0.39 -1.05 16 21 C 0.06 0.57 6.44 -39.06 -0.25 0.32 16 22 C 0.11 1.15 6.54 -83.50 -0.55 0.60 16 23 C -0.12 -1.38 8.59 -39.26 -0.34 -1.72 16 24 N -0.66 -6.64 5.47 -9.68 -0.05 -6.69 16 25 C 0.49 5.16 7.64 -10.82 -0.08 5.07 16 26 O -0.51 -6.58 17.01 5.55 0.09 -6.49 16 27 C 0.08 0.61 3.69 -27.86 -0.10 0.51 16 28 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 29 C -0.14 -0.83 9.14 37.16 0.34 -0.49 16 30 O -0.30 -2.72 10.11 -19.94 -0.20 -2.92 16 31 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.41 7.49 8.01 -40.82 -0.33 7.16 16 36 H 0.43 4.01 8.30 -40.82 -0.34 3.67 16 37 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.15 1.86 6.22 -52.49 -0.33 1.53 16 40 H 0.42 3.91 8.89 -40.82 -0.36 3.55 16 41 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.53 7.86 -51.93 -0.41 0.13 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -32.06 363.90 -5.76 -37.82 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.84 Total: 10.80 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -2.71 Total: 8.54 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.39 Total: -51.88 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: 0.06 Total: -27.40 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.14 Total: 16.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.06 -5.76 -37.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438808979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.435 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds