Wall clock time and date at job start Wed Apr 1 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47028 * 2 1 4 4 C 1.50701 * 109.46686 * 119.99721 * 2 1 3 5 5 H 1.07996 * 120.00247 * 120.00543 * 4 2 1 6 6 C 1.37884 * 119.99955 * 299.99712 * 4 2 1 7 7 N 1.31515 * 119.99583 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00057 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47280 * 89.99815 * 8 6 4 10 10 H 1.48501 * 109.47082 * 210.00172 * 8 6 4 11 11 H 1.48502 * 109.47256 * 329.99848 * 8 6 4 12 12 N 1.46501 * 109.47076 * 239.99560 * 2 1 3 13 13 C 1.34773 * 119.99593 * 85.00160 * 12 2 1 14 14 O 1.21358 * 120.00546 * 359.97438 * 13 12 2 15 15 C 1.49340 * 119.99504 * 179.97438 * 13 12 2 16 16 O 1.21383 * 120.00013 * 359.97438 * 15 13 12 17 17 N 1.34772 * 119.99905 * 179.97438 * 15 13 12 18 18 C 1.39859 * 120.00075 * 184.61051 * 17 15 13 19 19 C 1.38942 * 119.97918 * 144.89434 * 18 17 15 20 20 C 1.38210 * 120.17834 * 179.97438 * 19 18 17 21 21 C 1.38437 * 119.97329 * 0.02562 * 20 19 18 22 22 C 1.39439 * 119.99171 * 0.02562 * 21 20 19 23 23 C 1.38417 * 120.05522 * 359.97438 * 22 21 20 24 24 N 1.40224 * 119.26850 * 179.97438 * 22 21 20 25 25 C 1.35078 * 118.99854 * 15.49845 * 24 22 21 26 26 O 1.21286 * 120.13007 * 181.61913 * 25 24 22 27 27 C 1.50754 * 119.73896 * 1.89405 * 25 24 22 28 28 H 1.08993 * 109.44951 * 88.47340 * 27 25 24 29 29 C 1.52995 * 109.44338 * 208.37750 * 27 25 24 30 30 O 1.36064 * 120.58176 * 180.02562 * 21 20 19 31 31 H 1.08996 * 109.47226 * 300.00563 * 1 2 3 32 32 H 1.09002 * 109.47018 * 60.00395 * 1 2 3 33 33 H 1.09002 * 109.47480 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99419 * 180.02562 * 7 6 4 35 35 H 0.96996 * 119.99654 * 264.99982 * 12 2 1 36 36 H 0.97006 * 119.99596 * 4.61712 * 17 15 13 37 37 H 1.08003 * 119.90716 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.01646 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.11833 * 180.02562 * 23 22 21 40 40 H 0.96998 * 120.49484 * 195.47407 * 24 22 21 41 41 H 1.09009 * 109.47377 * 60.00144 * 29 27 25 42 42 H 1.09004 * 109.47233 * 179.97438 * 29 27 25 43 43 H 1.09001 * 109.47485 * 300.00059 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6247 1.2793 2.6541 9 1 -0.8028 0.8730 2.6997 10 1 0.9759 1.9954 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8580 1.1590 -2.4118 15 6 2.6454 -0.7223 -3.5762 16 8 2.9349 -1.8999 -3.5214 17 7 2.7736 -0.0502 -4.7373 18 6 3.1476 -0.7298 -5.9011 19 6 2.6232 -0.3447 -7.1288 20 6 2.9904 -1.0131 -8.2815 21 6 3.8825 -2.0695 -8.2141 22 6 4.4098 -2.4591 -6.9835 23 6 4.0424 -1.7901 -5.8288 24 7 5.3118 -3.5315 -6.9327 25 6 5.8905 -3.9552 -8.0773 26 8 6.6512 -4.8997 -8.0616 27 6 5.5921 -3.2454 -9.3734 28 1 6.2947 -2.4230 -9.5069 29 6 5.7332 -4.2289 -10.5368 30 8 4.2528 -2.7358 -9.3412 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.9032 -0.5276 4.4376 35 1 2.2490 -1.6318 -1.1524 36 1 2.6066 0.9049 -4.7658 37 1 1.9275 0.4796 -7.1825 38 1 2.5808 -0.7118 -9.2344 39 1 4.4504 -2.0907 -4.8751 40 1 5.5172 -3.9624 -6.0883 41 1 5.0318 -5.0526 -10.4035 42 1 5.5171 -3.7163 -11.4742 43 1 6.7509 -4.6187 -10.5618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438808979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:16 Heat of formation + Delta-G solvation = -122.290390 kcal Electronic energy + Delta-G solvation = -29466.044493 eV Core-core repulsion = 25090.228615 eV Total energy + Delta-G solvation = -4375.815878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.68938 -41.97321 -40.38518 -39.66278 -38.55001 -37.19888 -36.66566 -35.33954 -34.40849 -32.87398 -31.92042 -31.21260 -29.67462 -27.28448 -26.39482 -25.99539 -24.36728 -24.04972 -22.55989 -21.38705 -20.80412 -20.28112 -20.08359 -19.00798 -18.48108 -18.39556 -17.85949 -17.43456 -17.12153 -16.99707 -16.86170 -16.09079 -15.92929 -15.70496 -15.53803 -15.37733 -15.03558 -14.89863 -14.73046 -14.44650 -14.21014 -14.13570 -13.76431 -13.73820 -13.29663 -13.27130 -13.17455 -12.87561 -12.74268 -12.57951 -12.32485 -12.18229 -12.14670 -11.58121 -11.33795 -11.33409 -10.93419 -10.89971 -10.69504 -10.12683 -9.61382 -8.86383 -8.38733 -6.47302 -0.24762 0.03893 0.42947 1.11154 1.24296 1.30716 1.38098 1.47306 1.60186 2.05625 2.13517 2.26338 2.59862 2.61799 2.85174 2.96901 3.36257 3.56853 3.71570 3.87761 4.03486 4.06891 4.20249 4.39718 4.51528 4.53594 4.59239 4.63353 4.75713 4.82191 4.87490 4.92469 5.09750 5.14668 5.16957 5.21258 5.33701 5.35016 5.45044 5.53642 5.65926 5.84502 6.08935 6.17895 6.46822 6.55252 6.58786 6.69641 6.93168 7.20314 8.76546 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.002061 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.799829 B =13583.774172 C =14517.267162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.240 3.760 3 H 0.041 0.959 4 C -0.541 4.541 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.934 5.934 8 Si 0.944 3.056 9 H -0.258 1.258 10 H -0.294 1.294 11 H -0.251 1.251 12 N -0.668 5.668 13 C 0.502 3.498 14 O -0.548 6.548 15 C 0.518 3.482 16 O -0.519 6.519 17 N -0.628 5.628 18 C 0.137 3.863 19 C -0.110 4.110 20 C -0.077 4.077 21 C 0.058 3.942 22 C 0.097 3.903 23 C -0.136 4.136 24 N -0.660 5.660 25 C 0.488 3.512 26 O -0.541 6.541 27 C 0.078 3.922 28 H 0.129 0.871 29 C -0.132 4.132 30 O -0.301 6.301 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.271 0.729 35 H 0.412 0.588 36 H 0.436 0.564 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.134 0.866 40 H 0.417 0.583 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 1.931 -30.584 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.136 3.864 3 H 0.059 0.941 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.572 5.572 8 Si 0.770 3.230 9 H -0.184 1.184 10 H -0.221 1.221 11 H -0.175 1.175 12 N -0.317 5.317 13 C 0.282 3.718 14 O -0.427 6.427 15 C 0.300 3.700 16 O -0.394 6.394 17 N -0.276 5.276 18 C 0.043 3.957 19 C -0.131 4.131 20 C -0.096 4.096 21 C 0.011 3.989 22 C 0.001 3.999 23 C -0.159 4.159 24 N -0.306 5.306 25 C 0.276 3.724 26 O -0.418 6.418 27 C 0.019 3.981 28 H 0.146 0.854 29 C -0.189 4.189 30 O -0.216 6.216 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.277 0.723 37 H 0.192 0.808 38 H 0.195 0.805 39 H 0.152 0.848 40 H 0.257 0.743 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.419 1.397 -30.650 30.777 hybrid contribution 0.138 -0.093 1.867 1.875 sum 2.557 1.304 -28.783 28.926 Atomic orbital electron populations 1.22373 0.96923 1.02021 1.00300 1.19020 0.91826 0.93630 0.81900 0.94098 1.21206 1.32877 1.13786 0.90036 0.93041 1.25652 0.96869 0.99755 0.95093 1.69993 1.46428 1.42009 0.98771 0.85928 0.79531 0.79848 0.77672 1.18402 1.22096 1.17527 1.45976 1.62179 1.14974 1.08614 1.20022 0.80073 0.86953 0.84791 1.90720 1.51088 1.15785 1.85099 1.20176 0.78494 0.86589 0.84768 1.90759 1.47771 1.16225 1.84631 1.42973 1.65489 1.13588 1.05565 1.17602 0.96389 0.95336 0.86385 1.21126 1.00528 1.02599 0.88819 1.20650 0.97179 0.91157 1.00605 1.18861 1.00701 0.96081 0.83253 1.17884 0.95991 0.91741 0.94239 1.20656 0.99703 0.97898 0.97623 1.43856 1.42454 1.32650 1.11620 1.22129 0.79287 0.84009 0.86983 1.90773 1.36205 1.28159 1.86621 1.22913 0.84166 0.98509 0.92528 0.85364 1.21753 1.04128 0.97364 0.95660 1.86354 1.29806 1.69714 1.35751 0.93445 0.92451 0.91834 0.91949 0.75206 0.72315 0.80819 0.80495 0.84834 0.74338 0.92109 0.87695 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.38 8.96 71.98 0.65 -5.73 16 2 C 0.24 10.78 2.15 44.25 0.10 10.87 16 3 H 0.04 1.96 6.64 -2.39 -0.02 1.95 16 4 C -0.54 -28.94 9.31 25.60 0.24 -28.70 16 5 H 0.05 3.00 7.98 -2.91 -0.02 2.98 16 6 C 0.03 1.45 5.45 84.66 0.46 1.91 16 7 N -0.93 -55.32 13.96 21.45 0.30 -55.02 16 8 Si 0.94 42.47 24.37 68.60 1.67 44.15 16 9 H -0.26 -10.89 6.87 99.48 0.68 -10.21 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.25 -10.79 6.53 99.48 0.65 -10.14 16 12 N -0.67 -25.78 5.06 -447.55 -2.27 -28.05 16 13 C 0.50 17.12 7.85 87.24 0.68 17.81 16 14 O -0.55 -20.10 16.14 -3.27 -0.05 -20.15 16 15 C 0.52 14.64 7.73 87.24 0.67 15.32 16 16 O -0.52 -16.52 13.90 -3.35 -0.05 -16.56 16 17 N -0.63 -12.88 5.32 -304.74 -1.62 -14.50 16 18 C 0.14 2.54 6.30 38.19 0.24 2.78 16 19 C -0.11 -1.29 9.96 22.43 0.22 -1.07 16 20 C -0.08 -0.86 9.99 22.31 0.22 -0.64 16 21 C 0.06 0.95 6.44 22.61 0.15 1.10 16 22 C 0.10 1.93 6.54 38.13 0.25 2.18 16 23 C -0.14 -2.95 8.59 22.48 0.19 -2.75 16 24 N -0.66 -13.54 5.47 -302.74 -1.66 -15.20 16 25 C 0.49 10.13 7.64 87.63 0.67 10.79 16 26 O -0.54 -14.33 17.01 -3.05 -0.05 -14.38 16 27 C 0.08 1.09 3.69 29.86 0.11 1.20 16 28 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 29 C -0.13 -1.39 9.14 71.98 0.66 -0.73 16 30 O -0.30 -4.70 10.11 -94.28 -0.95 -5.65 16 31 H 0.05 1.95 3.27 -2.39 -0.01 1.94 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.41 15.42 8.01 -92.71 -0.74 14.68 16 36 H 0.44 7.10 8.30 -92.70 -0.77 6.33 16 37 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.13 3.38 6.22 -2.91 -0.02 3.37 16 40 H 0.42 8.34 8.89 -92.71 -0.82 7.52 16 41 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 0.97 7.86 -2.39 -0.02 0.96 16 Total: -1.00 -70.59 363.90 -0.46 -71.05 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -1.29 Total: 29.98 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 5.51 Total: 24.34 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -5.24 Total: -112.77 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -1.10 Total: -56.74 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.67 Total: 44.15 kcal Total: -70.59 -0.46 -71.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438808979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.242 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds