Wall clock time and date at job start Wed Apr 1 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47109 * 2 1 4 4 C 1.50699 * 109.47178 * 239.99708 * 2 1 3 5 5 H 1.07996 * 120.00339 * 240.00165 * 4 2 1 6 6 C 1.37884 * 119.99669 * 60.00003 * 4 2 1 7 7 N 1.31510 * 119.99640 * 179.72226 * 6 4 2 8 8 Si 1.86799 * 120.00058 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46996 * 269.72199 * 8 6 4 10 10 H 1.48496 * 109.47055 * 29.72015 * 8 6 4 11 11 H 1.48495 * 109.47152 * 149.72125 * 8 6 4 12 12 N 1.46504 * 109.47115 * 120.00128 * 2 1 3 13 13 C 1.46499 * 119.99984 * 59.99745 * 12 2 1 14 14 C 1.34777 * 119.99904 * 239.99619 * 12 2 1 15 15 O 1.21363 * 120.00192 * 356.69942 * 14 12 2 16 16 C 1.49328 * 119.99987 * 176.68913 * 14 12 2 17 17 O 1.21391 * 119.99829 * 5.66642 * 16 14 12 18 18 N 1.34778 * 120.00216 * 185.66357 * 16 14 12 19 19 C 1.39835 * 120.00272 * 174.87592 * 18 16 14 20 20 C 1.39082 * 119.92450 * 326.07566 * 19 18 16 21 21 C 1.38021 * 120.10856 * 179.74264 * 20 19 18 22 22 C 1.38653 * 119.92120 * 0.50704 * 21 20 19 23 23 C 1.39509 * 120.15951 * 359.76651 * 22 21 20 24 24 C 1.38524 * 119.79881 * 359.97382 * 23 22 21 25 25 O 1.35574 * 107.27909 * 179.97438 * 23 22 21 26 26 C 1.34223 * 109.20399 * 0.02562 * 25 23 22 27 27 O 1.21597 * 125.26701 * 179.97438 * 26 25 23 28 28 N 1.34775 * 109.46820 * 359.97438 * 26 25 23 29 29 C 1.46502 * 126.25830 * 180.02562 * 28 26 25 30 30 H 1.09001 * 109.46858 * 299.99918 * 1 2 3 31 31 H 1.09000 * 109.46909 * 60.00107 * 1 2 3 32 32 H 1.08996 * 109.47109 * 179.97438 * 1 2 3 33 33 H 0.97006 * 119.99638 * 180.27431 * 7 6 4 34 34 H 1.09003 * 109.46811 * 95.87172 * 13 12 2 35 35 H 1.09003 * 109.47228 * 215.86880 * 13 12 2 36 36 H 1.08999 * 109.47268 * 335.87614 * 13 12 2 37 37 H 0.96993 * 119.99490 * 354.87439 * 18 16 14 38 38 H 1.07996 * 119.94542 * 359.97438 * 20 19 18 39 39 H 1.07996 * 120.04121 * 180.24919 * 21 20 19 40 40 H 1.08001 * 120.06794 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.46869 * 269.95823 * 29 28 26 42 42 H 1.08994 * 109.47353 * 29.96011 * 29 28 26 43 43 H 1.09005 * 109.46941 * 149.95718 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 2.1421 -0.8562 -3.5565 8 14 0.6258 1.2798 -2.6541 9 1 -0.8017 0.8739 -2.7060 10 1 0.8442 2.1741 -1.4889 11 1 0.9818 1.9989 -3.9036 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.1360 1.1073 1.8620 16 6 3.2299 -0.7163 3.3387 17 8 2.9744 -1.8901 3.5131 18 7 3.9078 -0.0274 4.2781 19 6 4.2231 -0.6334 5.4982 20 6 3.3479 -1.5559 6.0614 21 6 3.6578 -2.1603 7.2629 22 6 4.8389 -1.8390 7.9143 23 6 5.7171 -0.9099 7.3558 24 6 5.4060 -0.3089 6.1471 25 8 6.7721 -0.7954 8.1994 26 6 6.5873 -1.6092 9.2506 27 8 7.3566 -1.7367 10.1836 28 7 5.4170 -2.2632 9.1121 29 6 4.8544 -3.2403 10.0475 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9110 -0.5225 -4.4375 34 1 2.4664 -2.7353 1.0638 35 1 1.5217 -2.2603 2.4957 36 1 0.7418 -2.3277 0.8970 37 1 4.1769 0.8888 4.1077 38 1 2.4259 -1.8025 5.5559 39 1 2.9793 -2.8795 7.6972 40 1 6.0829 0.4106 5.7106 41 1 5.1966 -4.2396 9.7784 42 1 5.1820 -3.0044 11.0599 43 1 3.7660 -3.2038 10.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439346547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:28 Heat of formation + Delta-G solvation = -43.866641 kcal Electronic energy + Delta-G solvation = -29814.520812 eV Core-core repulsion = 25442.105642 eV Total energy + Delta-G solvation = -4372.415169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.61888 -41.06857 -39.27388 -38.31875 -37.66746 -36.59163 -35.95860 -34.40579 -32.77535 -31.12119 -30.55797 -29.71311 -28.12095 -26.50827 -25.43052 -24.91863 -24.05343 -22.78212 -22.25009 -21.20560 -19.53279 -19.09254 -18.11650 -17.87170 -17.80765 -16.95940 -16.83864 -16.42759 -15.99111 -15.79508 -15.43697 -15.24108 -14.72980 -14.66342 -14.60499 -14.52169 -13.93717 -13.69738 -13.54266 -13.36135 -13.06177 -13.05668 -12.59560 -12.51414 -12.34317 -12.10069 -11.96965 -11.89620 -11.42003 -11.35450 -11.29569 -10.86356 -10.80393 -10.25341 -10.03586 -9.73848 -9.47937 -9.29773 -9.04840 -8.73798 -8.19346 -7.98607 -6.23612 -4.26093 0.51027 0.68056 1.57567 1.66847 2.08083 2.14024 2.65792 3.06672 3.15847 3.29533 3.30414 3.44282 3.72581 3.88157 4.09894 4.25552 4.45201 4.48844 4.64372 4.73725 4.76404 4.89068 5.02991 5.08286 5.15805 5.37646 5.54784 5.65677 5.78080 5.79722 5.88133 6.06060 6.07429 6.17454 6.23685 6.31472 6.46718 6.68911 6.74475 6.76547 6.94471 7.04204 7.24482 7.45180 7.59355 7.89309 8.23832 8.42181 8.77931 9.34945 10.88788 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.031476 B = 0.002065 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.348300 B =13557.866169 C =13859.462922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.227 3.773 3 H 0.066 0.934 4 C -0.532 4.532 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.293 1.293 12 N -0.544 5.544 13 C 0.071 3.929 14 C 0.496 3.504 15 O -0.533 6.533 16 C 0.514 3.486 17 O -0.492 6.492 18 N -0.649 5.649 19 C 0.169 3.831 20 C -0.097 4.097 21 C -0.076 4.076 22 C 0.050 3.950 23 C 0.057 3.943 24 C -0.105 4.105 25 O -0.234 6.234 26 C 0.635 3.365 27 O -0.491 6.491 28 N -0.548 5.548 29 C 0.100 3.900 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.267 0.733 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.427 0.573 38 H 0.154 0.846 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -2.801 24.099 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.125 3.875 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.220 1.220 12 N -0.274 5.274 13 C -0.071 4.071 14 C 0.277 3.723 15 O -0.412 6.412 16 C 0.297 3.703 17 O -0.365 6.365 18 N -0.297 5.297 19 C 0.073 3.927 20 C -0.118 4.118 21 C -0.098 4.098 22 C -0.048 4.048 23 C 0.010 3.990 24 C -0.127 4.127 25 O -0.140 6.140 26 C 0.390 3.610 27 O -0.374 6.374 28 N -0.281 5.281 29 C -0.039 4.039 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.265 0.735 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.532 -3.031 24.374 24.567 hybrid contribution -0.357 0.972 -0.361 1.096 sum 0.175 -2.059 24.013 24.102 Atomic orbital electron populations 1.22480 0.98432 1.01547 0.99594 1.19523 0.90408 0.95243 0.82281 0.91592 1.21081 1.33192 1.14529 0.88178 0.90092 1.24863 0.95624 0.96599 0.95550 1.69865 1.44715 1.40083 0.98039 0.86921 0.80460 0.83689 0.77666 1.20270 1.18773 1.21973 1.47888 1.45677 1.12739 1.21099 1.22214 1.01523 0.80743 1.02641 1.19497 0.81846 0.86722 0.84251 1.90741 1.55917 1.17632 1.76901 1.20863 0.78002 0.86657 0.84735 1.90689 1.51980 1.15217 1.78663 1.43234 1.55517 1.17963 1.12939 1.17159 0.92634 0.96642 0.86254 1.21068 1.00099 0.96651 0.93981 1.19922 0.93969 1.01213 0.94657 1.18541 0.97597 0.99726 0.88889 1.18432 0.86692 1.00040 0.93869 1.19535 0.96510 1.03908 0.92725 1.84996 1.40914 1.57701 1.30346 1.18487 0.81925 0.78410 0.82162 1.91156 1.48750 1.67424 1.30095 1.45682 1.20065 1.41511 1.20801 1.21820 0.99616 0.90313 0.92200 0.94575 0.92754 0.92127 0.92256 0.92332 0.89249 0.90926 0.73456 0.82890 0.84125 0.83332 0.90683 0.89121 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.66 37.16 0.32 -2.91 16 2 C 0.23 5.11 2.22 -69.08 -0.15 4.96 16 3 H 0.07 1.62 5.96 -51.93 -0.31 1.31 16 4 C -0.53 -14.09 8.95 -34.44 -0.31 -14.40 16 5 H 0.08 2.34 7.89 -52.49 -0.41 1.93 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 8 Si 0.88 20.72 24.37 -169.99 -4.14 16.58 16 9 H -0.28 -6.18 6.88 56.52 0.39 -5.80 16 10 H -0.26 -5.99 6.52 56.52 0.37 -5.62 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.54 -10.55 2.75 -175.82 -0.48 -11.03 16 13 C 0.07 1.18 8.75 59.85 0.52 1.70 16 14 C 0.50 8.91 7.73 -11.64 -0.09 8.82 16 15 O -0.53 -10.69 15.82 5.49 0.09 -10.60 16 16 C 0.51 7.24 7.50 -11.64 -0.09 7.16 16 17 O -0.49 -7.12 10.85 5.46 0.06 -7.06 16 18 N -0.65 -7.11 5.33 -10.28 -0.05 -7.16 16 19 C 0.17 1.65 6.27 -83.70 -0.52 1.13 16 20 C -0.10 -0.88 8.64 -39.35 -0.34 -1.22 16 21 C -0.08 -0.57 10.03 -39.51 -0.40 -0.97 16 22 C 0.05 0.45 6.85 -83.69 -0.57 -0.12 16 23 C 0.06 0.58 7.35 -39.00 -0.29 0.29 16 24 C -0.11 -0.95 9.97 -39.28 -0.39 -1.34 16 25 O -0.23 -2.76 10.72 -22.01 -0.24 -2.99 16 26 C 0.64 7.52 9.07 54.05 0.49 8.01 16 27 O -0.49 -7.03 17.81 -19.00 -0.34 -7.37 16 28 N -0.55 -4.85 3.21 -126.37 -0.41 -5.25 16 29 C 0.10 0.49 11.07 59.85 0.66 1.15 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.14 3.28 -51.93 -0.17 0.96 16 32 H 0.06 1.13 6.67 -51.93 -0.35 0.78 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.29 5.36 -51.93 -0.28 1.01 16 36 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 37 H 0.43 4.09 8.29 -40.82 -0.34 3.75 16 38 H 0.15 1.42 6.44 -52.49 -0.34 1.08 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.42 8.06 -51.93 -0.42 0.00 16 43 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -33.13 359.20 -5.24 -38.37 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.67 Total: 2.04 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -1.25 Total: 14.26 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.17 Total: -48.65 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.43 Total: -28.02 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.14 Total: 16.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.13 -5.24 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439346547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.496 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds