Wall clock time and date at job start Wed Apr 1 2020 06:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47197 * 2 1 4 4 C 1.50704 * 109.47101 * 120.00443 * 2 1 3 5 5 H 1.07996 * 119.99998 * 119.99756 * 4 2 1 6 6 C 1.37875 * 119.99996 * 299.99522 * 4 2 1 7 7 N 1.31516 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00010 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47356 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47503 * 300.00263 * 8 6 4 11 11 H 1.48495 * 109.47282 * 60.00415 * 8 6 4 12 12 N 1.46498 * 109.46859 * 240.00277 * 2 1 3 13 13 C 1.34778 * 120.00388 * 85.00250 * 12 2 1 14 14 O 1.21367 * 119.99518 * 359.97438 * 13 12 2 15 15 C 1.49331 * 120.00366 * 179.97438 * 13 12 2 16 16 O 1.21382 * 119.99767 * 0.02562 * 15 13 12 17 17 N 1.34775 * 119.99870 * 179.97438 * 15 13 12 18 18 C 1.39837 * 119.99810 * 175.38783 * 17 15 13 19 19 C 1.38943 * 120.00523 * 214.83947 * 18 17 15 20 20 C 1.38027 * 119.99315 * 179.76920 * 19 18 17 21 21 C 1.38883 * 120.00270 * 0.47689 * 20 19 18 22 22 N 1.40073 * 119.98960 * 179.74952 * 21 20 19 23 23 C 1.47087 * 125.56448 * 359.74050 * 22 21 20 24 24 C 1.54087 * 103.78408 * 179.90651 * 23 22 21 25 25 O 1.45695 * 104.00848 * 0.34039 * 24 23 22 26 26 C 1.33794 * 109.47484 * 359.77932 * 25 24 23 27 27 O 1.21518 * 123.06892 * 180.02562 * 26 25 24 28 28 C 1.38887 * 120.01820 * 359.77527 * 21 20 19 29 29 C 1.38023 * 120.00146 * 359.97438 * 28 21 20 30 30 H 1.09007 * 109.46884 * 299.99472 * 1 2 3 31 31 H 1.08999 * 109.47452 * 59.99291 * 1 2 3 32 32 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00024 * 179.97438 * 7 6 4 34 34 H 0.97006 * 119.99926 * 264.99783 * 12 2 1 35 35 H 0.97005 * 120.00150 * 355.39447 * 17 15 13 36 36 H 1.08000 * 120.00269 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.99378 * 180.23186 * 20 19 18 38 38 H 1.09002 * 110.56163 * 298.60233 * 23 22 21 39 39 H 1.09005 * 110.56434 * 61.44459 * 23 22 21 40 40 H 1.09004 * 110.70890 * 241.61616 * 24 23 22 41 41 H 1.08997 * 110.44902 * 118.93965 * 24 23 22 42 42 H 1.07994 * 120.00064 * 179.97438 * 28 21 20 43 43 H 1.08005 * 120.00196 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 1.8270 -0.4202 5.2205 10 1 1.8281 -2.5200 4.0080 11 1 3.8075 -1.1192 4.0076 12 7 2.0182 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8580 1.1593 -2.4117 15 6 2.6453 -0.7220 -3.5764 16 8 2.9339 -1.8997 -3.5219 17 7 2.7735 -0.0497 -4.7374 18 6 3.3302 -0.6819 -5.8536 19 6 4.1135 0.0425 -6.7437 20 6 4.6668 -0.5828 -7.8427 21 6 4.4325 -1.9337 -8.0642 22 7 4.9898 -2.5668 -9.1825 23 6 5.8337 -1.9206 -10.1994 24 6 6.1644 -3.0615 -11.1809 25 8 5.4728 -4.2169 -10.6247 26 6 4.8364 -3.8588 -9.5036 27 8 4.1799 -4.6344 -8.8372 28 6 3.6453 -2.6569 -7.1775 29 6 3.0960 -2.0332 -6.0756 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.7083 1.1607 3.4845 34 1 2.2490 -1.6318 -1.1527 35 1 2.4797 0.8728 -4.7988 36 1 4.2921 1.0940 -6.5738 37 1 5.2787 -0.0206 -8.5326 38 1 5.2842 -1.1260 -10.7042 39 1 6.7456 -1.5297 -9.7480 40 1 7.2392 -3.2400 -11.2163 41 1 5.7835 -2.8304 -12.1756 42 1 3.4629 -3.7072 -7.3503 43 1 2.4835 -2.5955 -5.3862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492243406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:25 Heat of formation + Delta-G solvation = -92.153369 kcal Electronic energy + Delta-G solvation = -29085.085879 eV Core-core repulsion = 24710.576840 eV Total energy + Delta-G solvation = -4374.509039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34692 -40.79718 -39.29427 -38.10152 -37.67914 -36.24036 -35.16593 -34.19347 -32.42662 -31.30325 -30.72589 -29.29688 -28.83650 -25.40854 -25.18172 -24.75476 -23.32196 -22.61534 -21.40605 -20.72320 -19.63994 -18.73543 -18.58620 -17.98243 -17.59451 -17.31604 -16.44973 -15.97007 -15.71343 -15.42027 -15.27561 -15.05552 -14.73539 -14.56588 -14.46174 -14.31554 -14.18957 -13.77425 -13.48615 -13.30752 -12.99806 -12.89573 -12.82576 -12.49253 -11.91749 -11.81413 -11.33716 -11.24757 -11.14311 -11.06039 -11.00558 -10.80609 -10.57151 -10.38193 -10.28082 -9.83118 -9.25675 -9.16470 -9.05687 -8.63339 -8.15940 -7.90358 -6.18170 -4.27864 0.85979 1.14028 1.78408 1.80530 2.29559 2.65791 2.83179 3.25407 3.30008 3.32532 3.45181 3.49181 3.71931 3.99771 4.02533 4.06197 4.32994 4.54510 4.58693 4.65146 4.78998 4.85493 5.02432 5.08072 5.14871 5.23514 5.34928 5.51697 5.82993 6.00647 6.11274 6.22664 6.34037 6.70499 6.77128 6.82799 6.84382 7.00399 7.06921 7.19875 7.38651 7.48483 7.60723 7.76063 7.89416 8.03798 8.41492 8.58999 8.83277 9.39141 10.87775 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.001826 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.266190 B =15329.637575 C =15875.145395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.536 6.536 15 C 0.507 3.493 16 O -0.504 6.504 17 N -0.650 5.650 18 C 0.129 3.871 19 C -0.114 4.114 20 C -0.134 4.134 21 C 0.158 3.842 22 N -0.568 5.568 23 C 0.059 3.941 24 C 0.042 3.958 25 O -0.322 6.322 26 C 0.643 3.357 27 O -0.498 6.498 28 C -0.131 4.131 29 C -0.089 4.089 30 H 0.095 0.905 31 H 0.016 0.984 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.423 0.577 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.160 0.840 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.202 -1.397 -28.575 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.733 3.267 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.274 3.726 14 O -0.415 6.415 15 C 0.290 3.710 16 O -0.377 6.377 17 N -0.298 5.298 18 C 0.034 3.966 19 C -0.135 4.135 20 C -0.155 4.155 21 C 0.066 3.934 22 N -0.305 5.305 23 C -0.064 4.064 24 C -0.033 4.033 25 O -0.232 6.232 26 C 0.397 3.603 27 O -0.382 6.382 28 C -0.152 4.152 29 C -0.110 4.110 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.261 0.739 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.177 0.823 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.785 -1.947 -28.120 29.837 hybrid contribution 0.468 -0.155 0.697 0.853 sum 10.252 -2.102 -27.423 29.352 Atomic orbital electron populations 1.22100 0.97774 0.99607 1.01228 1.18987 0.91483 0.94137 0.79319 0.92769 1.21152 1.32874 1.13504 0.90017 0.91776 1.24876 0.94685 0.94936 0.99098 1.69881 1.35611 1.22358 1.24192 0.86441 0.79216 0.79625 0.81461 1.21092 1.20035 1.20093 1.46515 1.61162 1.14564 1.09327 1.19642 0.81184 0.87284 0.84537 1.90730 1.50832 1.15219 1.84698 1.20981 0.78114 0.87159 0.84712 1.90736 1.46856 1.15227 1.84901 1.43207 1.60462 1.17517 1.08575 1.17830 0.97148 0.93094 0.88527 1.20703 0.97280 1.00494 0.94984 1.20400 1.03579 0.91995 0.99551 1.17391 0.97576 0.91820 0.86603 1.45341 1.50791 1.09532 1.24835 1.22980 0.96832 0.97191 0.89371 1.24357 0.99411 0.81540 0.98024 1.87345 1.62897 1.35300 1.37610 1.18466 0.79455 0.81939 0.80403 1.90982 1.41411 1.54720 1.51066 1.21508 0.97751 1.02414 0.93489 1.21292 0.99465 0.93521 0.96675 0.88701 0.96449 0.95062 0.92388 0.76272 0.73896 0.84665 0.85253 0.88036 0.88044 0.87061 0.87102 0.82289 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.53 2.56 -69.08 -0.18 6.35 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.32 11.32 55.43 0.63 -23.69 16 8 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.67 -14.19 5.06 -55.40 -0.28 -14.47 16 13 C 0.50 9.77 7.85 -11.64 -0.09 9.68 16 14 O -0.54 -11.59 16.14 5.48 0.09 -11.50 16 15 C 0.51 8.50 7.73 -11.64 -0.09 8.41 16 16 O -0.50 -9.13 13.90 5.47 0.08 -9.05 16 17 N -0.65 -8.71 5.32 -10.27 -0.05 -8.77 16 18 C 0.13 1.60 6.30 -83.69 -0.53 1.07 16 19 C -0.11 -1.07 9.96 -39.40 -0.39 -1.46 16 20 C -0.13 -1.10 9.48 -39.42 -0.37 -1.47 16 21 C 0.16 1.63 6.64 -83.61 -0.55 1.08 16 22 N -0.57 -4.85 3.17 -118.22 -0.37 -5.22 16 23 C 0.06 0.18 6.48 -3.15 -0.02 0.16 16 24 C 0.04 0.10 8.23 37.73 0.31 0.41 16 25 O -0.32 -2.74 11.09 -37.89 -0.42 -3.16 16 26 C 0.64 7.14 8.77 53.71 0.47 7.61 16 27 O -0.50 -7.47 14.74 -19.12 -0.28 -7.75 16 28 C -0.13 -1.68 9.30 -39.42 -0.37 -2.04 16 29 C -0.09 -1.21 8.69 -39.40 -0.34 -1.55 16 30 H 0.09 2.48 6.07 -51.92 -0.32 2.17 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.40 8.02 8.01 -40.82 -0.33 7.69 16 35 H 0.42 4.92 8.30 -40.82 -0.34 4.58 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 0.62 7.30 -52.49 -0.38 0.24 16 38 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 41 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.16 2.26 5.23 -52.49 -0.27 1.99 16 43 H 0.15 2.21 6.22 -52.48 -0.33 1.88 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -33.85 368.55 -7.15 -41.00 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.86 Total: 9.25 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -2.21 Total: 12.28 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.08 Total: -52.15 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.54 Total: -31.46 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.85 -7.15 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492243406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.155 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds