Wall clock time and date at job start Wed Apr 1 2020 06:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47655 * 2 1 4 4 C 1.50698 * 109.47337 * 239.99739 * 2 1 3 5 5 H 1.08001 * 119.99920 * 240.00121 * 4 2 1 6 6 C 1.37875 * 119.99997 * 60.00253 * 4 2 1 7 7 N 1.31515 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00174 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47134 * 59.99881 * 8 6 4 10 10 H 1.48503 * 109.47291 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47210 * 300.00028 * 8 6 4 12 12 N 1.46511 * 109.46814 * 120.00035 * 2 1 3 13 13 C 1.34776 * 119.99835 * 274.99594 * 12 2 1 14 14 O 1.21368 * 119.99838 * 0.02562 * 13 12 2 15 15 C 1.49324 * 120.00027 * 179.97438 * 13 12 2 16 16 O 1.21388 * 120.00175 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00027 * 180.02562 * 15 13 12 18 18 C 1.39845 * 120.00021 * 184.35478 * 17 15 13 19 19 C 1.38940 * 120.00826 * 324.66273 * 18 17 15 20 20 C 1.38025 * 119.99441 * 179.76472 * 19 18 17 21 21 C 1.38884 * 120.00378 * 0.50533 * 20 19 18 22 22 N 1.40069 * 119.99531 * 179.72248 * 21 20 19 23 23 C 1.47092 * 125.55485 * 359.74208 * 22 21 20 24 24 C 1.54091 * 103.77753 * 179.86900 * 23 22 21 25 25 O 1.45696 * 104.00794 * 0.37751 * 24 23 22 26 26 C 1.33783 * 109.47563 * 359.74823 * 25 24 23 27 27 O 1.21520 * 123.07354 * 180.02562 * 26 25 24 28 28 C 1.38888 * 120.01296 * 359.74621 * 21 20 19 29 29 C 1.38020 * 120.00794 * 359.97438 * 28 21 20 30 30 H 1.09005 * 109.46929 * 60.00162 * 1 2 3 31 31 H 1.09005 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47457 * 299.99878 * 1 2 3 33 33 H 0.97000 * 120.00356 * 180.02562 * 7 6 4 34 34 H 0.96994 * 119.99915 * 95.00659 * 12 2 1 35 35 H 0.97002 * 120.00302 * 4.64318 * 17 15 13 36 36 H 1.07998 * 120.00188 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.99532 * 180.23020 * 20 19 18 38 38 H 1.08997 * 110.56568 * 298.57304 * 23 22 21 39 39 H 1.09003 * 110.56841 * 61.42476 * 23 22 21 40 40 H 1.09001 * 110.73062 * 241.63710 * 24 23 22 41 41 H 1.09007 * 110.42750 * 118.96503 * 24 23 22 42 42 H 1.08005 * 119.99727 * 179.97438 * 28 21 20 43 43 H 1.07997 * 120.00455 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 7 2.0182 -0.6907 1.1963 13 6 2.1470 -0.0183 2.3572 14 8 1.8580 1.1592 2.4117 15 6 2.6441 -0.7223 3.5766 16 8 2.9327 -1.9001 3.5222 17 7 2.7724 -0.0501 4.7377 18 6 3.3232 -0.6843 5.8557 19 6 3.0778 -2.0333 6.0805 20 6 3.6255 -2.6601 7.1815 21 6 4.4133 -1.9401 8.0702 22 7 4.9643 -2.5750 9.1906 23 6 4.7844 -3.9910 9.5459 24 6 5.5967 -4.1493 10.8457 25 8 6.1359 -2.8178 11.0889 26 6 5.7366 -1.9903 10.1165 27 8 6.0462 -0.8159 10.0763 28 6 4.6545 -0.5904 7.8486 29 6 4.1117 0.0356 6.7447 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7090 1.1614 -3.4844 34 1 2.2490 -1.6318 1.1527 35 1 2.4788 0.8724 4.7990 36 1 2.4620 -2.5923 5.3916 37 1 3.4379 -3.7095 7.3542 38 1 3.7313 -4.2110 9.7210 39 1 5.1864 -4.6360 8.7645 40 1 6.4036 -4.8696 10.7111 41 1 4.9467 -4.4541 11.6659 42 1 5.2668 -0.0305 8.5401 43 1 4.2989 1.0852 6.5726 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492243408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:28 Heat of formation + Delta-G solvation = -92.831600 kcal Electronic energy + Delta-G solvation = -29051.395535 eV Core-core repulsion = 24676.857086 eV Total energy + Delta-G solvation = -4374.538449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35879 -40.81161 -39.30329 -38.12345 -37.68402 -36.25728 -35.17994 -34.20127 -32.44188 -31.29729 -30.74415 -29.31930 -28.82363 -25.42183 -25.17014 -24.79804 -23.37997 -22.49081 -21.49557 -20.73123 -19.66245 -18.70459 -18.59167 -17.98833 -17.70311 -17.26110 -16.41301 -15.91615 -15.78819 -15.55397 -15.25631 -15.06065 -14.73872 -14.58241 -14.47258 -14.28855 -14.18463 -13.80554 -13.43530 -13.30670 -13.05640 -12.93198 -12.83260 -12.50990 -11.83432 -11.79157 -11.34401 -11.29829 -11.15258 -11.11550 -11.02136 -10.84015 -10.60338 -10.39799 -10.29710 -9.83075 -9.27052 -9.18054 -9.07196 -8.64877 -8.17524 -7.91100 -6.19554 -4.29408 0.83541 1.16022 1.77880 1.78084 2.27462 2.64986 2.82257 3.23735 3.28694 3.30777 3.45909 3.48114 3.70443 3.99657 4.03760 4.05099 4.31300 4.56139 4.61978 4.67104 4.80626 4.90850 5.02127 5.08931 5.13389 5.15484 5.35529 5.50346 5.84875 6.05362 6.12221 6.13927 6.30554 6.68684 6.73334 6.81137 6.83938 6.98711 7.05445 7.18416 7.37060 7.46060 7.58962 7.74346 7.87289 8.02306 8.39753 8.57500 8.81701 9.37616 10.86393 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.001790 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.756806 B =15639.250761 C =16089.358153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.535 6.535 15 C 0.509 3.491 16 O -0.507 6.507 17 N -0.650 5.650 18 C 0.128 3.872 19 C -0.092 4.092 20 C -0.133 4.133 21 C 0.158 3.842 22 N -0.567 5.567 23 C 0.058 3.942 24 C 0.042 3.958 25 O -0.322 6.322 26 C 0.644 3.356 27 O -0.502 6.502 28 C -0.132 4.132 29 C -0.110 4.110 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.424 0.576 36 H 0.148 0.852 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.160 0.840 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -11.065 25.515 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.273 3.727 14 O -0.413 6.413 15 C 0.292 3.708 16 O -0.381 6.381 17 N -0.297 5.297 18 C 0.034 3.966 19 C -0.112 4.112 20 C -0.154 4.154 21 C 0.066 3.934 22 N -0.304 5.304 23 C -0.065 4.065 24 C -0.033 4.033 25 O -0.232 6.232 26 C 0.398 3.602 27 O -0.386 6.386 28 C -0.153 4.153 29 C -0.131 4.131 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.262 0.738 36 H 0.165 0.835 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.178 0.822 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.586 -10.296 25.485 28.048 hybrid contribution 0.189 -0.723 -0.889 1.162 sum 5.775 -11.019 24.595 27.563 Atomic orbital electron populations 1.22098 0.97783 0.99565 1.01243 1.18988 0.91470 0.94163 0.79313 0.92761 1.21144 1.32899 1.13516 0.90016 0.91796 1.24879 0.94687 0.94935 0.99102 1.69879 1.35610 1.22294 1.24216 0.86443 0.79231 0.79586 0.81487 1.20059 1.21082 1.20084 1.46507 1.61239 1.14523 1.09334 1.19646 0.81210 0.87306 0.84550 1.90739 1.50700 1.15208 1.84686 1.20970 0.78006 0.87129 0.84708 1.90712 1.47141 1.15292 1.84983 1.43226 1.60488 1.17508 1.08470 1.17825 0.97184 0.93120 0.88516 1.21117 0.99757 0.93723 0.96621 1.20563 1.00138 0.99862 0.94867 1.17389 0.97539 0.92094 0.86354 1.45340 1.50147 1.10836 1.24086 1.22999 1.03155 0.82476 0.97826 1.24369 0.98896 0.82604 0.97427 1.87335 1.68899 1.21768 1.45166 1.18449 0.77915 0.85351 0.78437 1.90959 1.60123 1.11662 1.75823 1.21358 1.01991 0.92824 0.99088 1.20885 0.96700 1.00768 0.94714 0.88703 0.95090 0.96446 0.92367 0.76326 0.73816 0.83474 0.85271 0.87965 0.87943 0.87020 0.87073 0.82236 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.15 0.34 -3.20 16 2 C 0.26 6.46 2.56 -69.08 -0.18 6.29 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.17 11.32 55.43 0.63 -23.54 16 8 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.67 -13.96 5.06 -55.40 -0.28 -14.24 16 13 C 0.49 9.64 7.85 -11.64 -0.09 9.55 16 14 O -0.53 -11.55 16.14 5.48 0.09 -11.46 16 15 C 0.51 8.32 7.72 -11.64 -0.09 8.23 16 16 O -0.51 -8.73 13.93 5.46 0.08 -8.66 16 17 N -0.65 -8.70 5.32 -10.27 -0.05 -8.75 16 18 C 0.13 1.59 6.29 -83.68 -0.53 1.07 16 19 C -0.09 -1.09 8.69 -39.40 -0.34 -1.43 16 20 C -0.13 -1.27 9.48 -39.42 -0.37 -1.64 16 21 C 0.16 1.63 6.64 -83.61 -0.55 1.08 16 22 N -0.57 -4.83 3.17 -118.22 -0.37 -5.21 16 23 C 0.06 0.20 6.48 -3.15 -0.02 0.18 16 24 C 0.04 0.11 8.23 37.73 0.31 0.42 16 25 O -0.32 -2.67 11.09 -37.86 -0.42 -3.09 16 26 C 0.64 6.89 8.77 53.71 0.47 7.36 16 27 O -0.50 -7.10 14.74 -19.12 -0.28 -7.38 16 28 C -0.13 -1.51 9.30 -39.42 -0.37 -1.88 16 29 C -0.11 -1.22 9.96 -39.40 -0.39 -1.61 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.40 7.80 8.01 -40.82 -0.33 7.47 16 35 H 0.42 5.06 8.30 -40.82 -0.34 4.72 16 36 H 0.15 1.87 6.24 -52.49 -0.33 1.55 16 37 H 0.13 0.85 7.30 -52.49 -0.38 0.47 16 38 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.11 0.04 8.14 -51.93 -0.42 -0.39 16 41 H 0.11 0.02 8.14 -51.93 -0.42 -0.41 16 42 H 0.16 1.98 5.23 -52.48 -0.27 1.70 16 43 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -33.16 368.59 -7.15 -40.31 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.86 Total: 9.32 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -2.20 Total: 11.81 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.08 Total: -51.74 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.54 Total: -30.59 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.16 -7.15 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492243408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.518 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds