Wall clock time and date at job start Wed Apr 1 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47655 * 2 1 4 4 C 1.50698 * 109.47337 * 239.99739 * 2 1 3 5 5 H 1.08001 * 119.99920 * 240.00121 * 4 2 1 6 6 C 1.37875 * 119.99997 * 60.00253 * 4 2 1 7 7 N 1.31515 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00174 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47134 * 59.99881 * 8 6 4 10 10 H 1.48503 * 109.47291 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47210 * 300.00028 * 8 6 4 12 12 N 1.46511 * 109.46814 * 120.00035 * 2 1 3 13 13 C 1.34776 * 119.99835 * 274.99594 * 12 2 1 14 14 O 1.21368 * 119.99838 * 0.02562 * 13 12 2 15 15 C 1.49324 * 120.00027 * 179.97438 * 13 12 2 16 16 O 1.21388 * 120.00175 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00027 * 180.02562 * 15 13 12 18 18 C 1.39845 * 120.00021 * 184.35478 * 17 15 13 19 19 C 1.38940 * 120.00826 * 324.66273 * 18 17 15 20 20 C 1.38025 * 119.99441 * 179.76472 * 19 18 17 21 21 C 1.38884 * 120.00378 * 0.50533 * 20 19 18 22 22 N 1.40069 * 119.99531 * 179.72248 * 21 20 19 23 23 C 1.47092 * 125.55485 * 359.74208 * 22 21 20 24 24 C 1.54091 * 103.77753 * 179.86900 * 23 22 21 25 25 O 1.45696 * 104.00794 * 0.37751 * 24 23 22 26 26 C 1.33783 * 109.47563 * 359.74823 * 25 24 23 27 27 O 1.21520 * 123.07354 * 180.02562 * 26 25 24 28 28 C 1.38888 * 120.01296 * 359.74621 * 21 20 19 29 29 C 1.38020 * 120.00794 * 359.97438 * 28 21 20 30 30 H 1.09005 * 109.46929 * 60.00162 * 1 2 3 31 31 H 1.09005 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47457 * 299.99878 * 1 2 3 33 33 H 0.97000 * 120.00356 * 180.02562 * 7 6 4 34 34 H 0.96994 * 119.99915 * 95.00659 * 12 2 1 35 35 H 0.97002 * 120.00302 * 4.64318 * 17 15 13 36 36 H 1.07998 * 120.00188 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.99532 * 180.23020 * 20 19 18 38 38 H 1.08997 * 110.56568 * 298.57304 * 23 22 21 39 39 H 1.09003 * 110.56841 * 61.42476 * 23 22 21 40 40 H 1.09001 * 110.73062 * 241.63710 * 24 23 22 41 41 H 1.09007 * 110.42750 * 118.96503 * 24 23 22 42 42 H 1.08005 * 119.99727 * 179.97438 * 28 21 20 43 43 H 1.07997 * 120.00455 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 7 2.0182 -0.6907 1.1963 13 6 2.1470 -0.0183 2.3572 14 8 1.8580 1.1592 2.4117 15 6 2.6441 -0.7223 3.5766 16 8 2.9327 -1.9001 3.5222 17 7 2.7724 -0.0501 4.7377 18 6 3.3232 -0.6843 5.8557 19 6 3.0778 -2.0333 6.0805 20 6 3.6255 -2.6601 7.1815 21 6 4.4133 -1.9401 8.0702 22 7 4.9643 -2.5750 9.1906 23 6 4.7844 -3.9910 9.5459 24 6 5.5967 -4.1493 10.8457 25 8 6.1359 -2.8178 11.0889 26 6 5.7366 -1.9903 10.1165 27 8 6.0462 -0.8159 10.0763 28 6 4.6545 -0.5904 7.8486 29 6 4.1117 0.0356 6.7447 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7090 1.1614 -3.4844 34 1 2.2490 -1.6318 1.1527 35 1 2.4788 0.8724 4.7990 36 1 2.4620 -2.5923 5.3916 37 1 3.4379 -3.7095 7.3542 38 1 3.7313 -4.2110 9.7210 39 1 5.1864 -4.6360 8.7645 40 1 6.4036 -4.8696 10.7111 41 1 4.9467 -4.4541 11.6659 42 1 5.2668 -0.0305 8.5401 43 1 4.2989 1.0852 6.5726 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492243408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:27 Heat of formation + Delta-G solvation = -116.732378 kcal Electronic energy + Delta-G solvation = -29052.431951 eV Core-core repulsion = 24676.857086 eV Total energy + Delta-G solvation = -4375.574865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.97936 -42.05412 -40.46933 -39.38168 -38.52491 -37.24471 -36.80604 -35.26600 -34.31045 -32.12603 -31.33633 -31.05440 -29.70139 -27.37410 -26.45851 -25.31777 -24.46797 -23.22204 -22.73847 -21.93732 -21.22905 -20.11970 -19.27576 -18.77122 -18.49442 -18.19788 -17.90325 -17.40240 -17.06424 -16.92901 -16.48168 -16.00704 -15.79887 -15.44629 -15.27297 -15.18204 -14.99219 -14.93228 -14.84924 -14.45454 -14.36463 -13.94884 -13.76336 -13.64965 -13.23086 -13.07044 -12.90442 -12.80730 -12.67465 -12.55995 -12.28458 -12.14623 -12.10013 -11.67235 -11.44438 -11.16654 -10.72705 -10.65115 -10.57726 -10.04949 -9.98238 -8.78634 -8.19543 -6.36905 -0.14789 0.30384 0.48432 1.14334 1.31722 1.47006 1.48074 1.51608 1.56464 2.13738 2.39528 2.42307 2.71364 2.75162 3.11224 3.22458 3.42205 3.49640 3.89368 3.93987 4.01824 4.16555 4.34705 4.40281 4.49865 4.62156 4.69612 4.70321 4.71130 4.89304 5.01323 5.02251 5.19818 5.25604 5.29956 5.31170 5.35912 5.45163 5.60186 5.76519 5.87962 6.01140 6.04176 6.18588 6.52237 6.65214 6.71659 6.78094 7.07620 7.35288 8.86258 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.001790 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.756806 B =15639.250761 C =16089.358153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.267 3.733 3 H 0.014 0.986 4 C -0.552 4.552 5 H 0.071 0.929 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.972 3.028 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.669 5.669 13 C 0.495 3.505 14 O -0.558 6.558 15 C 0.520 3.480 16 O -0.516 6.516 17 N -0.634 5.634 18 C 0.105 3.895 19 C -0.099 4.099 20 C -0.120 4.120 21 C 0.162 3.838 22 N -0.566 5.566 23 C 0.051 3.949 24 C 0.038 3.962 25 O -0.337 6.337 26 C 0.638 3.362 27 O -0.550 6.550 28 C -0.148 4.148 29 C -0.104 4.104 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.411 0.589 35 H 0.429 0.571 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.148 0.852 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -14.082 26.681 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.165 3.835 3 H 0.032 0.968 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.550 5.550 8 Si 0.797 3.203 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.319 5.319 13 C 0.275 3.725 14 O -0.438 6.438 15 C 0.302 3.698 16 O -0.391 6.391 17 N -0.281 5.281 18 C 0.011 3.989 19 C -0.119 4.119 20 C -0.141 4.141 21 C 0.069 3.931 22 N -0.303 5.303 23 C -0.070 4.070 24 C -0.035 4.035 25 O -0.247 6.247 26 C 0.394 3.606 27 O -0.437 6.437 28 C -0.169 4.169 29 C -0.125 4.125 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.247 0.753 35 H 0.269 0.731 36 H 0.158 0.842 37 H 0.183 0.817 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.166 0.834 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.981 -13.371 26.718 30.470 hybrid contribution 0.105 0.165 -1.063 1.081 sum 6.086 -13.206 25.656 29.490 Atomic orbital electron populations 1.21922 0.97344 0.99872 1.00321 1.18626 0.91781 0.92375 0.80729 0.96795 1.21454 1.33082 1.13801 0.90696 0.91092 1.25734 0.94777 0.95571 1.02102 1.70012 1.36554 1.23562 1.24876 0.85397 0.78598 0.78720 0.77633 1.19006 1.20950 1.19755 1.46247 1.61795 1.14829 1.08996 1.20146 0.80182 0.87014 0.85172 1.90721 1.51429 1.16417 1.85273 1.20144 0.78529 0.86801 0.84361 1.90712 1.48030 1.15320 1.85031 1.43045 1.59541 1.17601 1.07871 1.17955 0.98680 0.93765 0.88542 1.21187 0.99976 0.93423 0.97341 1.20782 0.98650 1.01280 0.93355 1.17504 0.96935 0.91822 0.86839 1.45447 1.49081 1.12827 1.22904 1.23472 1.05140 0.79602 0.98770 1.24884 1.00197 0.80315 0.98132 1.87308 1.69076 1.23958 1.44363 1.18661 0.77811 0.85151 0.78961 1.90915 1.61841 1.13925 1.77057 1.21380 1.02476 0.93852 0.99149 1.20957 0.95998 1.01369 0.94157 0.90865 0.94017 0.96042 0.92331 0.75314 0.73139 0.84188 0.81707 0.85453 0.85806 0.84474 0.84282 0.83446 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.26 71.98 0.67 -5.93 16 2 C 0.27 13.49 2.56 44.24 0.11 13.60 16 3 H 0.01 0.82 7.58 -2.39 -0.02 0.80 16 4 C -0.55 -28.85 8.73 25.60 0.22 -28.62 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -50.71 11.32 21.45 0.24 -50.47 16 8 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 N -0.67 -28.20 5.06 -447.55 -2.27 -30.46 16 13 C 0.49 19.45 7.85 87.23 0.68 20.14 16 14 O -0.56 -24.61 16.14 -3.30 -0.05 -24.67 16 15 C 0.52 16.75 7.72 87.23 0.67 17.42 16 16 O -0.52 -17.26 13.93 -3.36 -0.05 -17.30 16 17 N -0.63 -16.64 5.32 -304.75 -1.62 -18.26 16 18 C 0.10 2.50 6.29 38.20 0.24 2.74 16 19 C -0.10 -2.17 8.69 22.39 0.19 -1.97 16 20 C -0.12 -1.95 9.48 22.37 0.21 -1.74 16 21 C 0.16 3.06 6.64 38.13 0.25 3.31 16 22 N -0.57 -8.44 3.17 -759.65 -2.40 -10.84 16 23 C 0.05 0.14 6.48 86.64 0.56 0.70 16 24 C 0.04 0.06 8.23 72.35 0.60 0.65 16 25 O -0.34 -5.07 11.09 -47.43 -0.53 -5.59 16 26 C 0.64 13.22 8.77 129.91 1.14 14.36 16 27 O -0.55 -16.02 14.74 19.62 0.29 -15.73 16 28 C -0.15 -3.34 9.30 22.37 0.21 -3.13 16 29 C -0.10 -2.27 9.96 22.39 0.22 -2.04 16 30 H 0.07 3.89 6.07 -2.38 -0.01 3.87 16 31 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.41 15.81 8.01 -92.71 -0.74 15.07 16 35 H 0.43 10.15 8.30 -92.71 -0.77 9.38 16 36 H 0.14 3.33 6.24 -2.91 -0.02 3.31 16 37 H 0.17 1.43 7.30 -2.91 -0.02 1.41 16 38 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.14 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.14 -0.56 8.14 -2.38 -0.02 -0.58 16 42 H 0.15 3.79 5.23 -2.91 -0.02 3.78 16 43 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -74.20 368.59 1.67 -72.53 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -0.41 Total: 26.41 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 6.44 Total: 30.93 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -6.05 Total: -110.03 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.34 Total: -63.30 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -74.20 1.67 -72.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492243408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.201 kcal (2) G-P(sol) polarization free energy of solvation -74.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds