Wall clock time and date at job start Wed Apr 1 2020 06:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46815 * 2 1 4 4 C 1.50700 * 109.47017 * 120.00269 * 2 1 3 5 5 H 1.07998 * 119.99843 * 119.99789 * 4 2 1 6 6 C 1.37879 * 119.99937 * 299.99871 * 4 2 1 7 7 N 1.31513 * 120.00069 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47051 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46891 * 300.00264 * 8 6 4 11 11 H 1.48497 * 109.46877 * 60.00287 * 8 6 4 12 12 N 1.46501 * 109.46968 * 240.00163 * 2 1 3 13 13 C 1.34774 * 119.99719 * 85.00452 * 12 2 1 14 14 O 1.21358 * 120.00606 * 359.97438 * 13 12 2 15 15 C 1.49334 * 119.99809 * 179.97438 * 13 12 2 16 16 O 1.21386 * 120.00076 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00227 * 179.97438 * 15 13 12 18 18 C 1.39837 * 120.00103 * 175.52393 * 17 15 13 19 19 C 1.38780 * 120.10432 * 34.67846 * 18 17 15 20 20 C 1.38166 * 119.99072 * 179.97438 * 19 18 17 21 21 C 1.38323 * 120.20751 * 0.02562 * 20 19 18 22 22 C 1.38210 * 120.20855 * 359.97438 * 21 20 19 23 23 C 1.38699 * 120.00309 * 359.72476 * 22 21 20 24 24 N 1.40065 * 120.10037 * 180.27227 * 23 22 21 25 25 C 1.47093 * 125.55209 * 90.27729 * 24 23 22 26 26 C 1.54089 * 103.77828 * 179.97438 * 25 24 23 27 27 O 1.45697 * 104.00989 * 0.02562 * 26 25 24 28 28 C 1.33792 * 109.47582 * 359.76944 * 27 26 25 29 29 O 1.21513 * 123.07790 * 180.25049 * 28 27 26 30 30 H 1.09002 * 109.46636 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47503 * 299.99746 * 1 2 3 32 32 H 1.09000 * 109.46926 * 59.99850 * 1 2 3 33 33 H 0.97003 * 120.00074 * 179.97438 * 7 6 4 34 34 H 0.96999 * 120.00027 * 264.99737 * 12 2 1 35 35 H 0.96999 * 119.99718 * 355.52796 * 17 15 13 36 36 H 1.07997 * 120.00276 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.89954 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.89886 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.99860 * 180.02562 * 22 21 20 40 40 H 1.09002 * 110.56778 * 298.53828 * 25 24 23 41 41 H 1.09001 * 110.56442 * 61.24229 * 25 24 23 42 42 H 1.08995 * 110.52239 * 118.63370 * 26 25 24 43 43 H 1.08997 * 110.52026 * 241.37034 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1205 4.0080 9 1 1.8259 -0.4208 5.2204 10 1 1.8257 -2.5204 4.0076 11 1 3.8063 -1.1210 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8582 1.1593 -2.4117 15 6 2.6454 -0.7219 -3.5763 16 8 2.9349 -1.8995 -3.5217 17 7 2.7737 -0.0497 -4.7374 18 6 3.3278 -0.6828 -5.8543 19 6 3.0991 -2.0339 -6.0734 20 6 3.6473 -2.6570 -7.1781 21 6 4.4251 -1.9382 -8.0679 22 6 4.6583 -0.5922 -7.8579 23 6 4.1071 0.0434 -6.7552 24 7 4.3374 1.4086 -6.5435 25 6 3.4987 2.5060 -7.0494 26 6 4.2014 3.7748 -6.5291 27 8 5.3506 3.2649 -5.7929 28 6 5.3550 1.9279 -5.8431 29 8 6.2054 1.2468 -5.3050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7081 1.1607 3.4845 34 1 2.2491 -1.6317 -1.1527 35 1 2.4817 0.8733 -4.7982 36 1 2.4927 -2.5983 -5.3805 37 1 3.4687 -3.7086 -7.3469 38 1 4.8515 -2.4303 -8.9295 39 1 5.2658 -0.0342 -8.5550 40 1 3.4769 2.5002 -8.1392 41 1 2.4884 2.4326 -6.6470 42 1 4.5274 4.3993 -7.3608 43 1 3.5401 4.3335 -5.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492411211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:33 Heat of formation + Delta-G solvation = -91.976094 kcal Electronic energy + Delta-G solvation = -30508.976098 eV Core-core repulsion = 26134.474746 eV Total energy + Delta-G solvation = -4374.501352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07366 -40.80101 -39.28771 -37.98763 -37.33294 -35.74799 -35.39850 -34.61665 -32.44425 -31.17286 -30.24654 -29.25631 -28.99208 -25.40054 -25.04634 -24.25450 -23.75375 -22.72151 -21.18953 -20.80771 -19.70495 -18.95804 -18.21321 -17.66615 -17.40296 -17.11109 -16.44838 -15.92062 -15.79352 -15.53013 -15.31179 -15.03083 -14.85120 -14.49600 -14.43240 -14.21209 -14.01124 -13.67814 -13.39345 -13.27811 -12.91690 -12.73480 -12.51231 -12.21177 -11.96966 -11.82868 -11.25690 -11.12481 -11.01263 -10.97244 -10.90286 -10.83377 -10.61850 -10.39562 -10.28582 -9.55874 -9.23854 -9.17227 -9.06383 -8.64208 -8.42695 -8.17237 -6.18633 -4.28341 0.77252 1.02944 1.79249 2.03699 2.48711 2.55920 3.14527 3.25805 3.30211 3.32786 3.35303 3.64046 3.74448 3.96184 4.24274 4.32144 4.55589 4.65030 4.75859 4.78514 4.96294 5.01803 5.03860 5.12810 5.14635 5.20479 5.21427 5.47199 5.86848 5.99255 6.11382 6.23684 6.28773 6.67840 6.72605 6.79871 6.94153 6.98674 7.00644 7.16142 7.33923 7.59418 7.71328 7.80152 7.83751 8.02261 8.38361 8.56520 8.81634 9.38758 10.87439 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.002834 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.494226 B = 9878.429780 C =10860.303316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.665 5.665 13 C 0.496 3.504 14 O -0.536 6.536 15 C 0.511 3.489 16 O -0.499 6.499 17 N -0.650 5.650 18 C 0.163 3.837 19 C -0.116 4.116 20 C -0.088 4.088 21 C -0.129 4.129 22 C -0.087 4.087 23 C 0.127 3.873 24 N -0.590 5.590 25 C 0.064 3.936 26 C 0.041 3.959 27 O -0.321 6.321 28 C 0.646 3.354 29 O -0.502 6.502 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.419 0.581 36 H 0.149 0.851 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 1.143 -25.539 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.733 3.267 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.200 1.200 12 N -0.314 5.314 13 C 0.274 3.726 14 O -0.414 6.414 15 C 0.294 3.706 16 O -0.372 6.372 17 N -0.296 5.296 18 C 0.067 3.933 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.148 4.148 22 C -0.107 4.107 23 C 0.036 3.964 24 N -0.335 5.335 25 C -0.058 4.058 26 C -0.034 4.034 27 O -0.231 6.231 28 C 0.401 3.599 29 O -0.384 6.384 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.256 0.744 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.263 1.119 -24.815 24.943 hybrid contribution 0.139 -0.291 0.707 0.777 sum 2.402 0.829 -24.108 24.241 Atomic orbital electron populations 1.22098 0.97738 0.99583 1.01210 1.18998 0.91465 0.94165 0.79261 0.92773 1.21157 1.32913 1.13558 0.90014 0.91745 1.24871 0.94635 0.94915 0.99097 1.69878 1.35628 1.22371 1.24222 0.86437 0.79308 0.79591 0.81413 1.21061 1.20018 1.20019 1.46510 1.61045 1.14556 1.09262 1.19580 0.81197 0.87282 0.84511 1.90717 1.50879 1.15157 1.84693 1.21026 0.77876 0.87162 0.84562 1.90722 1.46547 1.15219 1.84745 1.43134 1.60403 1.17329 1.08722 1.18053 0.95091 0.93012 0.87174 1.21330 1.01277 0.92814 0.98252 1.21195 0.96015 1.00242 0.93233 1.21044 1.00068 0.93386 1.00347 1.21095 0.98307 0.95037 0.96224 1.16751 1.01199 0.80778 0.97655 1.45061 1.28123 1.04650 1.55708 1.22959 0.96249 0.85010 1.01591 1.24348 0.85914 0.95864 0.97267 1.87350 1.46452 1.19368 1.69898 1.18507 0.81908 0.81114 0.78414 1.91101 1.39604 1.59052 1.48625 0.95054 0.88649 0.96518 0.92368 0.76264 0.74367 0.83333 0.84940 0.85135 0.85245 0.88466 0.88707 0.87290 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 2 C 0.26 6.62 2.56 -69.08 -0.18 6.45 16 3 H 0.05 1.55 7.58 -51.93 -0.39 1.15 16 4 C -0.54 -14.35 8.73 -34.44 -0.30 -14.65 16 5 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.91 16 8 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.67 -14.46 5.06 -55.40 -0.28 -14.75 16 13 C 0.50 10.16 7.85 -11.64 -0.09 10.07 16 14 O -0.54 -11.89 16.14 5.49 0.09 -11.80 16 15 C 0.51 9.01 7.73 -11.64 -0.09 8.92 16 16 O -0.50 -9.20 13.89 5.47 0.08 -9.12 16 17 N -0.65 -9.54 5.16 -10.17 -0.05 -9.59 16 18 C 0.16 2.17 6.32 -83.53 -0.53 1.64 16 19 C -0.12 -1.43 8.70 -39.41 -0.34 -1.77 16 20 C -0.09 -0.83 10.04 -39.58 -0.40 -1.22 16 21 C -0.13 -1.08 10.04 -39.56 -0.40 -1.47 16 22 C -0.09 -0.83 9.96 -39.42 -0.39 -1.22 16 23 C 0.13 1.49 5.48 -83.45 -0.46 1.04 16 24 N -0.59 -6.48 2.45 -118.09 -0.29 -6.77 16 25 C 0.06 0.38 7.63 -3.15 -0.02 0.35 16 26 C 0.04 0.24 8.23 37.73 0.31 0.55 16 27 O -0.32 -3.94 11.09 -37.88 -0.42 -4.36 16 28 C 0.65 9.49 8.81 53.71 0.47 9.96 16 29 O -0.50 -9.81 17.66 -19.12 -0.34 -10.15 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.40 8.17 8.01 -40.82 -0.33 7.84 16 35 H 0.42 5.61 7.97 -40.82 -0.33 5.29 16 36 H 0.15 1.97 6.19 -52.49 -0.33 1.65 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -35.01 375.16 -7.15 -42.16 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.03 Total: 9.73 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: -2.16 Total: 17.14 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.01 Total: -55.01 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.59 Total: -35.42 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.01 -7.15 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492411211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.818 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds