Wall clock time and date at job start Wed Apr 1 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46815 * 2 1 4 4 C 1.50700 * 109.47017 * 120.00269 * 2 1 3 5 5 H 1.07998 * 119.99843 * 119.99789 * 4 2 1 6 6 C 1.37879 * 119.99937 * 299.99871 * 4 2 1 7 7 N 1.31513 * 120.00069 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47051 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46891 * 300.00264 * 8 6 4 11 11 H 1.48497 * 109.46877 * 60.00287 * 8 6 4 12 12 N 1.46501 * 109.46968 * 240.00163 * 2 1 3 13 13 C 1.34774 * 119.99719 * 85.00452 * 12 2 1 14 14 O 1.21358 * 120.00606 * 359.97438 * 13 12 2 15 15 C 1.49334 * 119.99809 * 179.97438 * 13 12 2 16 16 O 1.21386 * 120.00076 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00227 * 179.97438 * 15 13 12 18 18 C 1.39837 * 120.00103 * 175.52393 * 17 15 13 19 19 C 1.38780 * 120.10432 * 34.67846 * 18 17 15 20 20 C 1.38166 * 119.99072 * 179.97438 * 19 18 17 21 21 C 1.38323 * 120.20751 * 0.02562 * 20 19 18 22 22 C 1.38210 * 120.20855 * 359.97438 * 21 20 19 23 23 C 1.38699 * 120.00309 * 359.72476 * 22 21 20 24 24 N 1.40065 * 120.10037 * 180.27227 * 23 22 21 25 25 C 1.47093 * 125.55209 * 90.27729 * 24 23 22 26 26 C 1.54089 * 103.77828 * 179.97438 * 25 24 23 27 27 O 1.45697 * 104.00989 * 0.02562 * 26 25 24 28 28 C 1.33792 * 109.47582 * 359.76944 * 27 26 25 29 29 O 1.21513 * 123.07790 * 180.25049 * 28 27 26 30 30 H 1.09002 * 109.46636 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47503 * 299.99746 * 1 2 3 32 32 H 1.09000 * 109.46926 * 59.99850 * 1 2 3 33 33 H 0.97003 * 120.00074 * 179.97438 * 7 6 4 34 34 H 0.96999 * 120.00027 * 264.99737 * 12 2 1 35 35 H 0.96999 * 119.99718 * 355.52796 * 17 15 13 36 36 H 1.07997 * 120.00276 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.89954 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.89886 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.99860 * 180.02562 * 22 21 20 40 40 H 1.09002 * 110.56778 * 298.53828 * 25 24 23 41 41 H 1.09001 * 110.56442 * 61.24229 * 25 24 23 42 42 H 1.08995 * 110.52239 * 118.63370 * 26 25 24 43 43 H 1.08997 * 110.52026 * 241.37034 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1205 4.0080 9 1 1.8259 -0.4208 5.2204 10 1 1.8257 -2.5204 4.0076 11 1 3.8063 -1.1210 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8582 1.1593 -2.4117 15 6 2.6454 -0.7219 -3.5763 16 8 2.9349 -1.8995 -3.5217 17 7 2.7737 -0.0497 -4.7374 18 6 3.3278 -0.6828 -5.8543 19 6 3.0991 -2.0339 -6.0734 20 6 3.6473 -2.6570 -7.1781 21 6 4.4251 -1.9382 -8.0679 22 6 4.6583 -0.5922 -7.8579 23 6 4.1071 0.0434 -6.7552 24 7 4.3374 1.4086 -6.5435 25 6 3.4987 2.5060 -7.0494 26 6 4.2014 3.7748 -6.5291 27 8 5.3506 3.2649 -5.7929 28 6 5.3550 1.9279 -5.8431 29 8 6.2054 1.2468 -5.3050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7081 1.1607 3.4845 34 1 2.2491 -1.6317 -1.1527 35 1 2.4817 0.8733 -4.7982 36 1 2.4927 -2.5983 -5.3805 37 1 3.4687 -3.7086 -7.3469 38 1 4.8515 -2.4303 -8.9295 39 1 5.2658 -0.0342 -8.5550 40 1 3.4769 2.5002 -8.1392 41 1 2.4884 2.4326 -6.6470 42 1 4.5274 4.3993 -7.3608 43 1 3.5401 4.3335 -5.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492411211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:32 Heat of formation + Delta-G solvation = -117.383506 kcal Electronic energy + Delta-G solvation = -30510.077846 eV Core-core repulsion = 26134.474746 eV Total energy + Delta-G solvation = -4375.603100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.97166 -42.08698 -40.53385 -39.36835 -38.44803 -37.13411 -36.54779 -35.99545 -34.38889 -31.89012 -31.33035 -30.91100 -29.86990 -27.41915 -26.48078 -24.99110 -24.51335 -23.94547 -22.47166 -22.05236 -21.34182 -20.32378 -19.25287 -18.67364 -18.36629 -18.15047 -17.98562 -17.45605 -17.16686 -16.99039 -16.48885 -16.21646 -15.93571 -15.78373 -15.36728 -15.22469 -15.17285 -14.91515 -14.75701 -14.48009 -14.12202 -13.86757 -13.76546 -13.32718 -13.18928 -13.05979 -12.94457 -12.83031 -12.77630 -12.45449 -12.32234 -12.16583 -12.06105 -11.78536 -11.63439 -11.21796 -10.80812 -10.65578 -10.28681 -10.06231 -9.95610 -9.36820 -8.23670 -6.41330 -0.21597 0.16598 0.47955 1.12468 1.27318 1.43800 1.44495 1.45559 1.53640 2.01963 2.35538 2.47709 2.59033 2.61478 3.07075 3.24863 3.35668 3.74381 3.91208 4.00056 4.07129 4.16498 4.35691 4.37782 4.44094 4.58485 4.65376 4.65977 4.69505 4.84250 4.96660 5.04413 5.14794 5.24095 5.25103 5.37241 5.43093 5.46804 5.55024 5.69594 5.84029 5.89872 5.99359 6.13403 6.37634 6.58205 6.66166 6.80111 6.97211 7.30634 8.82377 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.002834 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.494226 B = 9878.429780 C =10860.303316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H 0.013 0.987 4 C -0.557 4.557 5 H 0.069 0.931 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.972 3.028 9 H -0.281 1.281 10 H -0.264 1.264 11 H -0.274 1.274 12 N -0.668 5.668 13 C 0.495 3.505 14 O -0.556 6.556 15 C 0.516 3.484 16 O -0.511 6.511 17 N -0.636 5.636 18 C 0.128 3.872 19 C -0.131 4.131 20 C -0.086 4.086 21 C -0.112 4.112 22 C -0.087 4.087 23 C 0.117 3.883 24 N -0.584 5.584 25 C 0.060 3.940 26 C 0.035 3.965 27 O -0.343 6.343 28 C 0.641 3.359 29 O -0.568 6.568 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.022 0.978 33 H 0.269 0.731 34 H 0.410 0.590 35 H 0.422 0.578 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.146 0.854 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.920 0.345 -28.188 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.031 0.969 4 C -0.595 4.595 5 H 0.087 0.913 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.796 3.204 9 H -0.206 1.206 10 H -0.189 1.189 11 H -0.199 1.199 12 N -0.317 5.317 13 C 0.274 3.726 14 O -0.436 6.436 15 C 0.299 3.701 16 O -0.386 6.386 17 N -0.282 5.282 18 C 0.033 3.967 19 C -0.152 4.152 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.106 4.106 23 C 0.026 3.974 24 N -0.328 5.328 25 C -0.060 4.060 26 C -0.038 4.038 27 O -0.252 6.252 28 C 0.396 3.604 29 O -0.455 6.455 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.246 0.754 35 H 0.260 0.740 36 H 0.150 0.850 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.125 0.875 42 H 0.164 0.836 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.397 0.349 -27.549 27.655 hybrid contribution 0.069 0.043 1.338 1.340 sum 2.466 0.392 -26.211 26.330 Atomic orbital electron populations 1.21911 0.96999 0.99947 1.00434 1.18650 0.91988 0.92251 0.80505 0.96905 1.21463 1.33314 1.13910 0.90838 0.91305 1.25718 0.94654 0.95536 1.02025 1.70002 1.36397 1.23516 1.24991 0.85398 0.78546 0.78811 0.77632 1.20577 1.18906 1.19937 1.46276 1.61610 1.14817 1.08992 1.20068 0.80276 0.87075 0.85144 1.90691 1.51494 1.16156 1.85262 1.20293 0.78470 0.86910 0.84466 1.90717 1.47609 1.15357 1.84890 1.42940 1.59617 1.17277 1.08333 1.18305 0.97298 0.93832 0.87267 1.21365 1.01974 0.92475 0.99349 1.21535 0.95167 1.01603 0.92084 1.21507 0.98168 0.92773 1.00609 1.21436 0.97713 0.95779 0.95708 1.16998 1.01146 0.81241 0.97995 1.45146 1.27592 1.05441 1.54606 1.23376 0.95842 0.82956 1.03814 1.24881 0.84460 0.96231 0.98274 1.87298 1.48955 1.18217 1.70777 1.18759 0.81947 0.81607 0.78087 1.91029 1.42270 1.60771 1.51424 0.93977 0.90661 0.95933 0.92195 0.75389 0.73956 0.84956 0.82218 0.81312 0.82993 0.84734 0.87511 0.83578 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.27 14.03 2.56 44.25 0.11 14.14 16 3 H 0.01 0.78 7.58 -2.39 -0.02 0.77 16 4 C -0.56 -30.24 8.73 25.60 0.22 -30.02 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 6 C 0.02 1.17 5.30 84.66 0.45 1.62 16 7 N -0.91 -51.54 11.32 21.45 0.24 -51.30 16 8 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.67 -29.98 5.06 -447.55 -2.27 -32.24 16 13 C 0.49 20.98 7.85 87.23 0.68 21.66 16 14 O -0.56 -25.62 16.14 -3.27 -0.05 -25.67 16 15 C 0.52 18.76 7.73 87.23 0.67 19.43 16 16 O -0.51 -19.28 13.89 -3.36 -0.05 -19.33 16 17 N -0.64 -19.01 5.16 -304.44 -1.57 -20.58 16 18 C 0.13 3.36 6.32 38.30 0.24 3.60 16 19 C -0.13 -3.13 8.70 22.38 0.19 -2.93 16 20 C -0.09 -1.38 10.04 22.27 0.22 -1.15 16 21 C -0.11 -1.44 10.04 22.28 0.22 -1.21 16 22 C -0.09 -1.40 9.96 22.37 0.22 -1.17 16 23 C 0.12 2.60 5.48 38.24 0.21 2.81 16 24 N -0.58 -12.16 2.45 -759.23 -1.86 -14.02 16 25 C 0.06 0.55 7.63 86.63 0.66 1.22 16 26 C 0.03 0.33 8.23 72.35 0.60 0.93 16 27 O -0.34 -8.34 11.09 -47.51 -0.53 -8.87 16 28 C 0.64 19.03 8.81 129.91 1.14 20.17 16 29 O -0.57 -23.17 17.66 19.64 0.35 -22.82 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.41 17.07 8.01 -92.71 -0.74 16.33 16 35 H 0.42 11.53 7.97 -92.71 -0.74 10.79 16 36 H 0.13 3.56 6.19 -2.91 -0.02 3.54 16 37 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -80.52 375.16 2.43 -78.08 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.39 Total: 28.98 kcal Atomic # 6 Polarization: 36.58 SS G_CDS: 6.53 Total: 43.11 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.45 Total: -118.14 kcal Atomic # 8 Polarization: -76.41 SS G_CDS: -0.28 Total: -76.69 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -80.52 2.43 -78.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492411211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.301 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds