Wall clock time and date at job start Wed Apr 1 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46647 * 2 1 4 4 C 1.50701 * 109.47310 * 240.00069 * 2 1 3 5 5 H 1.07998 * 119.99452 * 245.67893 * 4 2 1 6 6 C 1.37877 * 120.00164 * 65.67348 * 4 2 1 7 7 N 1.31513 * 119.99753 * 196.36334 * 6 4 2 8 8 Si 1.86798 * 119.99961 * 16.63975 * 6 4 2 9 9 H 1.48500 * 109.47264 * 179.72012 * 8 6 4 10 10 H 1.48499 * 109.47187 * 299.72537 * 8 6 4 11 11 H 1.48505 * 109.46989 * 59.72170 * 8 6 4 12 12 N 1.46492 * 109.47144 * 119.99509 * 2 1 3 13 13 C 1.34780 * 120.00228 * 275.00172 * 12 2 1 14 14 O 1.21363 * 120.00039 * 0.02562 * 13 12 2 15 15 C 1.49331 * 119.99885 * 180.02562 * 13 12 2 16 16 O 1.21383 * 120.00525 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99885 * 179.97438 * 15 13 12 18 18 C 1.39829 * 120.00427 * 185.86365 * 17 15 13 19 19 C 1.38787 * 120.10025 * 19.51301 * 18 17 15 20 20 C 1.38176 * 119.98995 * 179.97438 * 19 18 17 21 21 C 1.38321 * 120.20268 * 0.02562 * 20 19 18 22 22 C 1.38202 * 120.21498 * 359.97438 * 21 20 19 23 23 C 1.38701 * 120.00162 * 359.74005 * 22 21 20 24 24 N 1.40066 * 120.09807 * 180.27424 * 23 22 21 25 25 C 1.47095 * 125.55536 * 90.26018 * 24 23 22 26 26 C 1.54083 * 103.78179 * 179.97438 * 25 24 23 27 27 O 1.45711 * 104.00886 * 359.97438 * 26 25 24 28 28 C 1.33792 * 109.47139 * 359.77564 * 27 26 25 29 29 O 1.21515 * 123.07307 * 180.27279 * 28 27 26 30 30 H 1.09000 * 109.47249 * 306.37873 * 1 2 3 31 31 H 1.09004 * 109.47649 * 66.38580 * 1 2 3 32 32 H 1.09003 * 109.46677 * 186.38295 * 1 2 3 33 33 H 0.96998 * 120.00444 * 355.10777 * 7 6 4 34 34 H 0.96997 * 120.00013 * 95.00611 * 12 2 1 35 35 H 0.97005 * 119.99680 * 5.86996 * 17 15 13 36 36 H 1.07999 * 120.00476 * 359.95967 * 19 18 17 37 37 H 1.07998 * 119.89760 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.89086 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.99813 * 180.02562 * 22 21 20 40 40 H 1.08997 * 110.56279 * 298.53734 * 25 24 23 41 41 H 1.09006 * 110.56134 * 61.24010 * 25 24 23 42 42 H 1.08999 * 110.52684 * 118.63019 * 26 25 24 43 43 H 1.08999 * 110.52359 * 241.37162 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5755 -1.6388 -1.1339 6 6 1.7985 -0.1751 -2.4794 7 7 1.9390 -0.9229 -3.5521 8 14 1.2895 1.6143 -2.6482 9 1 1.1072 1.9436 -4.0847 10 1 0.0125 1.8362 -1.9235 11 1 2.3443 2.4855 -2.0706 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0180 2.3571 14 8 1.8579 1.1594 2.4117 15 6 2.6453 -0.7218 3.5763 16 8 2.9349 -1.8993 3.5217 17 7 2.7745 -0.0493 4.7371 18 6 3.3552 -0.6730 5.8457 19 6 4.1516 -1.7967 5.6743 20 6 4.7247 -2.4110 6.7713 21 6 4.5071 -1.9098 8.0420 22 6 3.7156 -0.7913 8.2225 23 6 3.1408 -0.1644 7.1268 24 7 2.3430 0.9727 7.3068 25 6 2.8223 2.3633 7.3022 26 6 1.5455 3.1924 7.5402 27 8 0.4914 2.1926 7.6521 28 6 1.0177 0.9714 7.5049 29 8 0.3549 -0.0461 7.5498 30 1 -0.3634 0.6095 0.8274 31 1 -0.3634 0.4117 -0.9416 32 1 -0.3633 -1.0213 0.1143 33 1 2.2752 -1.8291 -3.4710 34 1 2.2491 -1.6316 1.1527 35 1 2.4646 0.8675 4.8036 36 1 4.3230 -2.1911 4.6836 37 1 5.3444 -3.2850 6.6362 38 1 4.9572 -2.3941 8.8960 39 1 3.5484 -0.4028 9.2161 40 1 3.5386 2.5241 8.1079 41 1 3.2688 2.6112 6.3392 42 1 1.6285 3.7656 8.4635 43 1 1.3561 3.8536 6.6946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492411212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:37 Heat of formation + Delta-G solvation = -87.693001 kcal Electronic energy + Delta-G solvation = -30509.959851 eV Core-core repulsion = 26135.644228 eV Total energy + Delta-G solvation = -4374.315623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18196 -40.99262 -39.40798 -38.18087 -37.43536 -35.84592 -35.57155 -34.76587 -32.54251 -31.22174 -30.37081 -29.87025 -29.15127 -25.42041 -24.80255 -24.33898 -23.83363 -22.80959 -21.27360 -20.73293 -19.83496 -19.13351 -18.32059 -17.83915 -17.50153 -17.22535 -17.19210 -16.30760 -15.92446 -15.69089 -15.28377 -15.09612 -14.91689 -14.54667 -14.51339 -14.12627 -14.07683 -13.75840 -13.50037 -13.32153 -13.01576 -12.83433 -12.80119 -12.31831 -12.29804 -12.02650 -11.90236 -11.56478 -11.20629 -11.07501 -11.00363 -10.86395 -10.57735 -10.13093 -9.87013 -9.66093 -9.32699 -9.19507 -9.14417 -8.52099 -8.42276 -8.37510 -6.66927 -4.31569 0.70256 0.98749 1.68895 1.94800 2.35932 2.40342 3.05093 3.26634 3.31541 3.37185 3.51004 3.52662 3.66624 3.79093 4.17412 4.34134 4.49409 4.57924 4.70098 4.72854 4.80720 4.94634 4.95655 5.07298 5.09112 5.12990 5.18315 5.41554 5.79144 5.96686 6.03927 6.19185 6.23203 6.26468 6.39868 6.51237 6.69825 6.75066 6.81607 6.90395 7.03456 7.18399 7.41813 7.59643 7.70996 8.09777 8.19189 8.38224 8.70391 9.38108 10.74587 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.002929 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.276699 B = 9558.732268 C =10866.938886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.240 3.760 3 H 0.047 0.953 4 C -0.622 4.622 5 H 0.065 0.935 6 C 0.040 3.960 7 N -0.894 5.894 8 Si 1.042 2.958 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.279 1.279 12 N -0.658 5.658 13 C 0.496 3.504 14 O -0.537 6.537 15 C 0.510 3.490 16 O -0.493 6.493 17 N -0.644 5.644 18 C 0.168 3.832 19 C -0.135 4.135 20 C -0.083 4.083 21 C -0.135 4.135 22 C -0.082 4.082 23 C 0.118 3.882 24 N -0.590 5.590 25 C 0.062 3.938 26 C 0.041 3.959 27 O -0.321 6.321 28 C 0.644 3.356 29 O -0.503 6.503 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.271 0.729 34 H 0.407 0.593 35 H 0.420 0.580 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 6.389 25.657 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.137 3.863 3 H 0.064 0.936 4 C -0.659 4.659 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.869 3.131 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.205 1.205 12 N -0.307 5.307 13 C 0.275 3.725 14 O -0.415 6.415 15 C 0.293 3.707 16 O -0.367 6.367 17 N -0.288 5.288 18 C 0.071 3.929 19 C -0.155 4.155 20 C -0.102 4.102 21 C -0.154 4.154 22 C -0.102 4.102 23 C 0.026 3.974 24 N -0.335 5.335 25 C -0.060 4.060 26 C -0.034 4.034 27 O -0.231 6.231 28 C 0.399 3.601 29 O -0.385 6.385 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.257 0.743 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.621 7.089 24.439 26.060 hybrid contribution 0.603 -1.076 1.208 1.726 sum 6.224 6.013 25.647 27.068 Atomic orbital electron populations 1.22542 0.98164 1.00668 1.00855 1.19257 0.91075 0.94307 0.81657 0.93570 1.22062 1.42266 1.10829 0.90783 0.91689 1.25708 0.94313 1.05109 0.91551 1.70865 1.40232 1.10408 1.31103 0.84086 0.77579 0.74916 0.76478 1.20698 1.19630 1.20545 1.46256 1.61034 1.14715 1.08690 1.19650 0.81097 0.87282 0.84498 1.90716 1.50868 1.15227 1.84737 1.20905 0.78224 0.86881 0.84648 1.90660 1.46425 1.15010 1.84564 1.43150 1.58555 1.17740 1.09317 1.18116 0.94520 0.94938 0.85352 1.21702 0.96451 0.95234 1.02145 1.21233 0.97925 0.99127 0.91885 1.21044 1.00082 0.96579 0.97736 1.21063 0.96274 0.95406 0.97454 1.16616 0.99347 0.90164 0.91241 1.45085 1.06794 1.05837 1.75785 1.22989 0.97786 0.80116 1.05085 1.24366 0.83050 0.90463 1.05527 1.87347 1.34282 1.15852 1.85658 1.18539 0.81376 0.83767 0.76423 1.91099 1.63561 1.29562 1.54277 0.94969 0.91315 0.93296 0.91910 0.75722 0.74306 0.82006 0.84904 0.85162 0.85250 0.88362 0.88581 0.87203 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.15 37.16 0.34 -3.30 16 2 C 0.24 5.64 2.14 -69.09 -0.15 5.49 16 3 H 0.05 1.14 6.24 -51.93 -0.32 0.82 16 4 C -0.62 -16.58 9.01 -34.44 -0.31 -16.89 16 5 H 0.06 1.83 7.96 -52.49 -0.42 1.41 16 6 C 0.04 1.11 5.31 -17.82 -0.09 1.02 16 7 N -0.89 -26.20 13.70 55.43 0.76 -25.44 16 8 Si 1.04 24.22 26.27 -169.99 -4.47 19.76 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.27 -5.83 5.72 56.52 0.32 -5.51 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.66 -13.63 5.06 -55.41 -0.28 -13.91 16 13 C 0.50 9.53 7.85 -11.64 -0.09 9.44 16 14 O -0.54 -11.02 16.15 5.49 0.09 -10.93 16 15 C 0.51 8.54 7.73 -11.64 -0.09 8.45 16 16 O -0.49 -8.64 13.38 5.47 0.07 -8.57 16 17 N -0.64 -9.15 5.30 -10.17 -0.05 -9.20 16 18 C 0.17 2.19 6.52 -83.54 -0.54 1.65 16 19 C -0.13 -1.67 8.78 -39.40 -0.35 -2.02 16 20 C -0.08 -0.79 10.04 -39.57 -0.40 -1.18 16 21 C -0.13 -1.12 10.04 -39.56 -0.40 -1.52 16 22 C -0.08 -0.76 9.96 -39.42 -0.39 -1.15 16 23 C 0.12 1.33 5.48 -83.45 -0.46 0.87 16 24 N -0.59 -6.05 2.24 -118.09 -0.26 -6.31 16 25 C 0.06 0.34 7.63 -3.15 -0.02 0.31 16 26 C 0.04 0.20 8.23 37.72 0.31 0.51 16 27 O -0.32 -3.55 11.09 -37.88 -0.42 -3.97 16 28 C 0.64 8.70 8.81 53.71 0.47 9.18 16 29 O -0.50 -9.14 17.66 -19.12 -0.34 -9.48 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.55 4.80 -51.93 -0.25 1.30 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 34 H 0.41 8.03 7.99 -40.82 -0.33 7.71 16 35 H 0.42 5.52 7.64 -40.82 -0.31 5.21 16 36 H 0.16 2.23 5.41 -52.49 -0.28 1.94 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -34.93 369.27 -6.46 -41.38 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -4.95 Total: 10.24 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -2.17 Total: 10.86 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.16 Total: -54.85 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.60 Total: -32.95 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -4.47 Total: 19.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.93 -6.46 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492411212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.311 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds