Wall clock time and date at job start Wed Apr 1 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46647 * 2 1 4 4 C 1.50701 * 109.47310 * 240.00069 * 2 1 3 5 5 H 1.07998 * 119.99452 * 245.67893 * 4 2 1 6 6 C 1.37877 * 120.00164 * 65.67348 * 4 2 1 7 7 N 1.31513 * 119.99753 * 196.36334 * 6 4 2 8 8 Si 1.86798 * 119.99961 * 16.63975 * 6 4 2 9 9 H 1.48500 * 109.47264 * 179.72012 * 8 6 4 10 10 H 1.48499 * 109.47187 * 299.72537 * 8 6 4 11 11 H 1.48505 * 109.46989 * 59.72170 * 8 6 4 12 12 N 1.46492 * 109.47144 * 119.99509 * 2 1 3 13 13 C 1.34780 * 120.00228 * 275.00172 * 12 2 1 14 14 O 1.21363 * 120.00039 * 0.02562 * 13 12 2 15 15 C 1.49331 * 119.99885 * 180.02562 * 13 12 2 16 16 O 1.21383 * 120.00525 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99885 * 179.97438 * 15 13 12 18 18 C 1.39829 * 120.00427 * 185.86365 * 17 15 13 19 19 C 1.38787 * 120.10025 * 19.51301 * 18 17 15 20 20 C 1.38176 * 119.98995 * 179.97438 * 19 18 17 21 21 C 1.38321 * 120.20268 * 0.02562 * 20 19 18 22 22 C 1.38202 * 120.21498 * 359.97438 * 21 20 19 23 23 C 1.38701 * 120.00162 * 359.74005 * 22 21 20 24 24 N 1.40066 * 120.09807 * 180.27424 * 23 22 21 25 25 C 1.47095 * 125.55536 * 90.26018 * 24 23 22 26 26 C 1.54083 * 103.78179 * 179.97438 * 25 24 23 27 27 O 1.45711 * 104.00886 * 359.97438 * 26 25 24 28 28 C 1.33792 * 109.47139 * 359.77564 * 27 26 25 29 29 O 1.21515 * 123.07307 * 180.27279 * 28 27 26 30 30 H 1.09000 * 109.47249 * 306.37873 * 1 2 3 31 31 H 1.09004 * 109.47649 * 66.38580 * 1 2 3 32 32 H 1.09003 * 109.46677 * 186.38295 * 1 2 3 33 33 H 0.96998 * 120.00444 * 355.10777 * 7 6 4 34 34 H 0.96997 * 120.00013 * 95.00611 * 12 2 1 35 35 H 0.97005 * 119.99680 * 5.86996 * 17 15 13 36 36 H 1.07999 * 120.00476 * 359.95967 * 19 18 17 37 37 H 1.07998 * 119.89760 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.89086 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.99813 * 180.02562 * 22 21 20 40 40 H 1.08997 * 110.56279 * 298.53734 * 25 24 23 41 41 H 1.09006 * 110.56134 * 61.24010 * 25 24 23 42 42 H 1.08999 * 110.52684 * 118.63019 * 26 25 24 43 43 H 1.08999 * 110.52359 * 241.37162 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5755 -1.6388 -1.1339 6 6 1.7985 -0.1751 -2.4794 7 7 1.9390 -0.9229 -3.5521 8 14 1.2895 1.6143 -2.6482 9 1 1.1072 1.9436 -4.0847 10 1 0.0125 1.8362 -1.9235 11 1 2.3443 2.4855 -2.0706 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0180 2.3571 14 8 1.8579 1.1594 2.4117 15 6 2.6453 -0.7218 3.5763 16 8 2.9349 -1.8993 3.5217 17 7 2.7745 -0.0493 4.7371 18 6 3.3552 -0.6730 5.8457 19 6 4.1516 -1.7967 5.6743 20 6 4.7247 -2.4110 6.7713 21 6 4.5071 -1.9098 8.0420 22 6 3.7156 -0.7913 8.2225 23 6 3.1408 -0.1644 7.1268 24 7 2.3430 0.9727 7.3068 25 6 2.8223 2.3633 7.3022 26 6 1.5455 3.1924 7.5402 27 8 0.4914 2.1926 7.6521 28 6 1.0177 0.9714 7.5049 29 8 0.3549 -0.0461 7.5498 30 1 -0.3634 0.6095 0.8274 31 1 -0.3634 0.4117 -0.9416 32 1 -0.3633 -1.0213 0.1143 33 1 2.2752 -1.8291 -3.4710 34 1 2.2491 -1.6316 1.1527 35 1 2.4646 0.8675 4.8036 36 1 4.3230 -2.1911 4.6836 37 1 5.3444 -3.2850 6.6362 38 1 4.9572 -2.3941 8.8960 39 1 3.5484 -0.4028 9.2161 40 1 3.5386 2.5241 8.1079 41 1 3.2688 2.6112 6.3392 42 1 1.6285 3.7656 8.4635 43 1 1.3561 3.8536 6.6946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492411212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:36 Heat of formation + Delta-G solvation = -113.764999 kcal Electronic energy + Delta-G solvation = -30511.090417 eV Core-core repulsion = 26135.644228 eV Total energy + Delta-G solvation = -4375.446190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.01324 -42.19866 -40.61537 -39.44180 -38.45053 -37.25473 -36.57439 -36.05675 -34.52687 -31.92902 -31.79471 -31.09039 -29.89632 -27.06722 -26.46768 -25.02577 -24.52813 -23.95947 -22.32330 -22.09940 -21.43638 -20.47452 -19.56843 -18.96864 -18.62299 -18.36314 -18.00545 -17.61860 -17.27879 -16.80021 -16.51361 -16.05696 -15.96161 -15.62432 -15.36827 -15.26419 -15.18543 -15.05407 -14.81022 -14.67085 -14.32721 -14.12819 -13.94689 -13.66687 -13.44271 -13.35088 -13.21513 -12.80578 -12.46225 -12.40818 -12.06312 -12.00275 -11.90234 -11.74982 -11.65608 -11.20323 -10.81622 -10.53087 -10.30276 -10.24825 -9.98078 -9.30643 -8.86196 -6.51521 -0.31013 0.14351 0.50675 1.04065 1.23239 1.42143 1.46427 1.51675 1.70902 1.92755 2.41066 2.44686 2.47131 2.61318 2.97426 3.22291 3.24238 3.71220 3.90057 3.99028 4.02419 4.13934 4.33425 4.35610 4.37267 4.41557 4.56441 4.62128 4.64989 4.65528 4.68976 4.93571 4.98591 5.13553 5.19316 5.25049 5.37345 5.41209 5.45218 5.48823 5.77026 5.88076 5.93859 6.12266 6.25806 6.42068 6.51135 6.78359 6.82988 7.26149 8.54572 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.002929 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.276699 B = 9558.732268 C =10866.938886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.243 3.757 3 H 0.041 0.959 4 C -0.621 4.621 5 H 0.038 0.962 6 C -0.004 4.004 7 N -0.924 5.924 8 Si 1.075 2.925 9 H -0.282 1.282 10 H -0.242 1.242 11 H -0.266 1.266 12 N -0.666 5.666 13 C 0.499 3.501 14 O -0.548 6.548 15 C 0.514 3.486 16 O -0.507 6.507 17 N -0.631 5.631 18 C 0.135 3.865 19 C -0.153 4.153 20 C -0.083 4.083 21 C -0.118 4.118 22 C -0.082 4.082 23 C 0.112 3.888 24 N -0.584 5.584 25 C 0.058 3.942 26 C 0.036 3.964 27 O -0.340 6.340 28 C 0.641 3.359 29 O -0.566 6.566 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.258 0.742 34 H 0.410 0.590 35 H 0.423 0.577 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 8.270 28.771 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.139 3.861 3 H 0.059 0.941 4 C -0.659 4.659 5 H 0.056 0.944 6 C -0.205 4.205 7 N -0.558 5.558 8 Si 0.896 3.104 9 H -0.208 1.208 10 H -0.166 1.166 11 H -0.191 1.191 12 N -0.315 5.315 13 C 0.279 3.721 14 O -0.427 6.427 15 C 0.297 3.703 16 O -0.382 6.382 17 N -0.275 5.275 18 C 0.039 3.961 19 C -0.173 4.173 20 C -0.101 4.101 21 C -0.137 4.137 22 C -0.102 4.102 23 C 0.020 3.980 24 N -0.329 5.329 25 C -0.062 4.062 26 C -0.037 4.037 27 O -0.249 6.249 28 C 0.397 3.603 29 O -0.453 6.453 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.246 0.754 35 H 0.261 0.739 36 H 0.160 0.840 37 H 0.175 0.825 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.150 0.850 41 H 0.124 0.876 42 H 0.163 0.837 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.556 9.012 27.616 29.780 hybrid contribution 0.457 -1.660 0.401 1.768 sum 7.013 7.352 28.016 29.802 Atomic orbital electron populations 1.22444 0.96860 1.01101 1.01285 1.19016 0.91959 0.93604 0.81481 0.94085 1.22216 1.41369 1.09866 0.92452 0.94411 1.26997 0.93981 1.08178 0.91364 1.70979 1.42508 1.10164 1.32139 0.83695 0.79057 0.70782 0.76891 1.20762 1.16633 1.19134 1.46087 1.61842 1.14860 1.08718 1.19984 0.80244 0.87083 0.84808 1.90692 1.51158 1.15766 1.85112 1.20303 0.78743 0.86624 0.84670 1.90671 1.47424 1.15333 1.84775 1.42971 1.57928 1.17700 1.08924 1.18342 0.96208 0.96090 0.85458 1.21674 0.97569 0.95693 1.02360 1.21540 0.97521 0.99500 0.91566 1.21485 0.98432 0.95533 0.98272 1.21419 0.95639 0.95319 0.97778 1.16837 0.99241 0.90816 0.91092 1.45163 1.05802 1.07507 1.74398 1.23384 0.98538 0.77202 1.07070 1.24881 0.81188 0.89380 1.08245 1.87305 1.36502 1.15913 1.85221 1.18743 0.81978 0.83750 0.75874 1.91034 1.65139 1.31892 1.57191 0.93558 0.91510 0.93181 0.93302 0.75429 0.73924 0.84041 0.82525 0.81461 0.82878 0.84995 0.87633 0.83677 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.88 9.15 71.98 0.66 -6.22 16 2 C 0.24 11.40 2.14 44.25 0.09 11.50 16 3 H 0.04 1.99 6.24 -2.38 -0.01 1.98 16 4 C -0.62 -33.79 9.01 25.60 0.23 -33.56 16 5 H 0.04 2.21 7.96 -2.91 -0.02 2.19 16 6 C 0.00 -0.24 5.31 84.65 0.45 0.21 16 7 N -0.92 -55.45 13.70 21.45 0.29 -55.15 16 8 Si 1.07 48.09 26.27 68.60 1.80 49.89 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.24 -9.69 5.72 99.48 0.57 -9.12 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 N -0.67 -27.91 5.06 -447.56 -2.27 -30.17 16 13 C 0.50 19.24 7.85 87.23 0.68 19.92 16 14 O -0.55 -22.20 16.15 -3.29 -0.05 -22.25 16 15 C 0.51 17.48 7.73 87.23 0.67 18.15 16 16 O -0.51 -18.29 13.38 -3.35 -0.04 -18.33 16 17 N -0.63 -17.94 5.30 -304.44 -1.61 -19.55 16 18 C 0.14 3.45 6.52 38.30 0.25 3.70 16 19 C -0.15 -3.71 8.78 22.39 0.20 -3.52 16 20 C -0.08 -1.39 10.04 22.27 0.22 -1.16 16 21 C -0.12 -1.53 10.04 22.28 0.22 -1.31 16 22 C -0.08 -1.27 9.96 22.37 0.22 -1.05 16 23 C 0.11 2.34 5.48 38.24 0.21 2.55 16 24 N -0.58 -10.99 2.24 -759.24 -1.70 -12.68 16 25 C 0.06 0.45 7.63 86.63 0.66 1.11 16 26 C 0.04 0.25 8.23 72.35 0.60 0.85 16 27 O -0.34 -7.10 11.09 -47.51 -0.53 -7.63 16 28 C 0.64 17.00 8.81 129.91 1.14 18.14 16 29 O -0.57 -21.07 17.66 19.64 0.35 -20.72 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.90 4.80 -2.38 -0.01 2.89 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.26 15.62 8.73 -92.71 -0.81 14.81 16 34 H 0.41 16.68 7.99 -92.71 -0.74 15.94 16 35 H 0.42 10.99 7.64 -92.70 -0.71 10.28 16 36 H 0.14 4.01 5.41 -2.91 -0.02 4.00 16 37 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.13 0.16 8.14 -2.39 -0.02 0.15 16 41 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -79.55 369.27 2.23 -77.32 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.53 Total: 29.97 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: 6.52 Total: 29.31 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -5.28 Total: -117.56 kcal Atomic # 8 Polarization: -68.65 SS G_CDS: -0.28 Total: -68.93 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.80 Total: 49.89 kcal Total: -79.55 2.23 -77.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492411212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.442 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds