Wall clock time and date at job start Wed Apr 1 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.50703 * 109.46850 * 240.00136 * 2 1 3 5 5 H 1.08004 * 119.99917 * 239.99830 * 4 2 1 6 6 C 1.37872 * 120.00018 * 60.00617 * 4 2 1 7 7 N 1.31514 * 120.00352 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99800 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47218 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47418 * 119.99674 * 8 6 4 11 11 H 1.48501 * 109.47118 * 239.99290 * 8 6 4 12 12 N 1.46500 * 109.47056 * 119.99945 * 2 1 3 13 13 C 1.46502 * 119.99887 * 60.00377 * 12 2 1 14 14 S 1.65601 * 120.00182 * 239.99810 * 12 2 1 15 15 O 1.42099 * 106.39852 * 336.46042 * 14 12 2 16 16 O 1.42100 * 106.40154 * 203.54484 * 14 12 2 17 17 N 1.65599 * 107.21714 * 90.00325 * 14 12 2 18 18 C 1.46817 * 120.32155 * 270.02214 * 17 14 12 19 19 C 1.53439 * 109.39845 * 231.86393 * 18 17 14 20 20 C 1.52662 * 108.62242 * 306.52472 * 19 18 17 21 21 H 1.08992 * 108.87962 * 303.78068 * 20 19 18 22 22 N 1.45583 * 112.01563 * 183.29938 * 20 19 18 23 23 C 1.34121 * 121.78171 * 215.04824 * 22 20 19 24 24 O 1.21517 * 118.22465 * 183.91876 * 23 22 20 25 25 O 1.34111 * 123.54157 * 3.93155 * 23 22 20 26 26 C 1.45609 * 117.98174 * 345.33517 * 25 23 22 27 27 C 1.52703 * 107.15171 * 43.90794 * 26 25 23 28 28 H 1.09001 * 110.28246 * 57.13835 * 27 26 25 29 29 C 1.47205 * 120.32482 * 89.99836 * 17 14 12 30 30 H 1.09001 * 109.47442 * 300.00041 * 1 2 3 31 31 H 1.09003 * 109.47041 * 59.99660 * 1 2 3 32 32 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00026 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46961 * 269.99688 * 13 12 2 35 35 H 1.09001 * 109.47092 * 29.99054 * 13 12 2 36 36 H 1.08999 * 109.47545 * 150.00031 * 13 12 2 37 37 H 1.09002 * 109.48242 * 351.84594 * 18 17 14 38 38 H 1.09003 * 109.48115 * 111.88436 * 18 17 14 39 39 H 1.09005 * 109.61200 * 66.26780 * 19 18 17 40 40 H 1.09005 * 109.60896 * 186.61270 * 19 18 17 41 41 H 0.96993 * 119.11002 * 35.02693 * 22 20 19 42 42 H 1.09008 * 109.79795 * 163.10420 * 26 25 23 43 43 H 1.09002 * 109.79896 * 283.90534 * 26 25 23 44 44 H 1.09002 * 109.77367 * 246.59376 * 29 17 14 45 45 H 1.08998 * 109.76888 * 7.33317 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1462 -2.2871 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5748 16 8 3.7118 -0.8790 2.9814 17 7 1.9607 0.8090 3.3998 18 6 1.4412 2.1652 3.1849 19 6 1.7148 3.0190 4.4301 20 6 1.1544 2.2940 5.6510 21 1 0.0949 2.0966 5.4884 22 7 1.3062 3.0778 6.8685 23 6 1.5554 2.5011 8.0534 24 8 1.5983 3.2097 9.0397 25 8 1.7600 1.1848 8.2085 26 6 1.3935 0.3024 7.1098 27 6 1.8868 0.9579 5.8219 28 1 2.9609 1.1356 5.8757 29 6 1.5748 0.0726 4.6147 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.7083 1.1610 -3.4844 34 1 0.7376 -2.1444 1.9993 35 1 1.5294 -2.5968 0.4707 36 1 2.4628 -2.5820 1.9863 37 1 1.9359 2.6115 2.3221 38 1 0.3672 2.1188 3.0046 39 1 2.7893 3.1590 4.5489 40 1 1.2292 3.9890 4.3224 41 1 1.2252 4.0432 6.8213 42 1 1.8750 -0.6671 7.2385 43 1 0.3111 0.1762 7.0829 44 1 0.5084 -0.1511 4.5872 45 1 2.1444 -0.8544 4.6804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495776616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:15 Heat of formation + Delta-G solvation = -145.549595 kcal Electronic energy + Delta-G solvation = -30675.724857 eV Core-core repulsion = 26434.344336 eV Total energy + Delta-G solvation = -4241.380522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48669 -38.72519 -37.16012 -36.91986 -36.26140 -35.40872 -35.15524 -32.67177 -32.45881 -31.05210 -29.20541 -26.87675 -25.62643 -25.27489 -24.64790 -23.68685 -21.68161 -20.80804 -20.35225 -19.04745 -18.25431 -17.85101 -17.24058 -16.99650 -16.50524 -16.31066 -15.86828 -15.52496 -15.20163 -14.83994 -14.70823 -14.35760 -14.16905 -14.04116 -13.57124 -13.40175 -13.14686 -12.79126 -12.54297 -12.50104 -12.13776 -11.95891 -11.88133 -11.81304 -11.60750 -11.48313 -11.33652 -11.28162 -11.04644 -11.01111 -10.94834 -10.90231 -10.52496 -10.47116 -10.32208 -10.15384 -9.57757 -9.38437 -9.17434 -8.54329 -8.08838 -6.16613 -4.23240 0.95314 2.33307 2.54186 3.05284 3.21679 3.26418 3.30583 3.34424 3.83232 3.90033 4.06617 4.32456 4.34190 4.52827 4.62021 4.73675 4.78336 4.84574 5.02433 5.07811 5.15549 5.16081 5.30479 5.38354 5.50998 5.60836 5.61561 5.71061 5.90337 5.91886 6.00821 6.22892 6.42148 6.48989 6.56197 6.69745 6.73205 6.91958 7.33828 7.35445 7.52219 7.68731 7.85074 7.94570 8.17352 8.79006 9.43142 10.89068 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.003017 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.494858 B = 9278.874672 C = 9633.107802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.987 5.987 13 C 0.096 3.904 14 S 2.775 3.225 15 O -0.968 6.968 16 O -0.992 6.992 17 N -1.012 6.012 18 C 0.122 3.878 19 C -0.137 4.137 20 C 0.137 3.863 21 H 0.083 0.917 22 N -0.726 5.726 23 C 0.659 3.341 24 O -0.540 6.540 25 O -0.342 6.342 26 C 0.069 3.931 27 C -0.155 4.155 28 H 0.101 0.899 29 C 0.133 3.867 30 H 0.009 0.991 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.419 0.581 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 0.201 13.956 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.830 5.830 13 C -0.051 4.051 14 S 2.786 3.214 15 O -0.952 6.952 16 O -0.976 6.976 17 N -0.849 5.849 18 C -0.004 4.004 19 C -0.176 4.176 20 C 0.032 3.968 21 H 0.100 0.900 22 N -0.393 5.393 23 C 0.412 3.588 24 O -0.425 6.425 25 O -0.253 6.253 26 C -0.006 4.006 27 C -0.176 4.176 28 H 0.120 0.880 29 C 0.006 3.994 30 H 0.028 0.972 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.257 0.743 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.083 0.317 14.524 14.851 hybrid contribution -0.284 -0.084 -1.241 1.276 sum -3.367 0.233 13.283 13.705 Atomic orbital electron populations 1.22108 0.98152 0.99803 1.00492 1.18743 0.91326 0.92942 0.80487 0.92462 1.21360 1.31674 1.13090 0.90025 0.91861 1.24897 0.94884 0.94989 0.99031 1.69853 1.36457 1.22696 1.23784 0.86447 0.78639 0.79707 0.82664 1.19708 1.20948 1.20848 1.57721 1.69906 1.19864 1.35495 1.21314 0.98677 0.82271 1.02811 1.02145 0.73775 0.73141 0.72385 1.93600 1.73751 1.55869 1.71976 1.93519 1.69147 1.60356 1.74606 1.58529 1.67784 1.24430 1.34176 1.21383 1.00396 0.80773 0.97854 1.22151 1.02837 0.99271 0.93373 1.21054 1.00205 0.90756 0.84815 0.89950 1.45464 1.75801 1.11666 1.06386 1.17940 0.75953 0.81372 0.83532 1.91034 1.56167 1.57746 1.37585 1.86647 1.79289 1.16067 1.43295 1.23454 1.01416 0.92951 0.82741 1.22477 1.02913 0.96193 0.96015 0.88030 1.21221 1.01602 0.94524 0.82057 0.97162 0.88926 0.94829 0.92685 0.94429 0.89738 0.91947 0.87681 0.90797 0.90306 0.89385 0.74268 0.86103 0.89710 0.90521 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.97 37.16 0.33 -2.69 16 2 C 0.27 6.03 2.62 -69.08 -0.18 5.84 16 3 H 0.06 1.43 6.91 -51.93 -0.36 1.07 16 4 C -0.52 -13.29 7.99 -34.44 -0.28 -13.57 16 5 H 0.06 1.61 7.33 -52.48 -0.38 1.23 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.54 11.32 55.43 0.63 -22.91 16 8 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.99 -18.49 3.12 -115.85 -0.36 -18.85 16 13 C 0.10 1.52 9.65 59.85 0.58 2.10 16 14 S 2.77 48.41 6.13 -107.50 -0.66 47.75 16 15 O -0.97 -20.48 15.25 -57.17 -0.87 -21.36 16 16 O -0.99 -18.25 15.31 -57.17 -0.88 -19.12 16 17 N -1.01 -12.39 3.36 -113.40 -0.38 -12.77 16 18 C 0.12 1.31 6.46 -3.64 -0.02 1.28 16 19 C -0.14 -1.11 5.78 -26.68 -0.15 -1.27 16 20 C 0.14 1.05 2.75 -68.43 -0.19 0.86 16 21 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 22 N -0.73 -6.38 5.32 -59.64 -0.32 -6.70 16 23 C 0.66 8.07 8.53 53.76 0.46 8.53 16 24 O -0.54 -8.69 17.96 -19.43 -0.35 -9.03 16 25 O -0.34 -3.87 10.45 -39.03 -0.41 -4.28 16 26 C 0.07 0.49 6.61 37.01 0.24 0.74 16 27 C -0.16 -1.28 2.28 -90.65 -0.21 -1.48 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 C 0.13 1.19 5.83 -3.70 -0.02 1.16 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 32 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 33 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 36 H 0.06 0.92 7.02 -51.93 -0.36 0.56 16 37 H 0.11 1.34 6.86 -51.93 -0.36 0.99 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.42 3.10 8.77 -40.82 -0.36 2.74 16 42 H 0.12 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.95 6.90 -51.93 -0.36 0.59 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -33.65 366.12 -9.25 -42.90 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.62 Total: 0.49 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 0.47 Total: 3.08 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.43 Total: -61.23 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -2.50 Total: -53.79 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 48.41 SS G_CDS: -0.66 Total: 47.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.65 -9.25 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495776616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.651 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds