Wall clock time and date at job start Wed Apr 1 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47237 * 2 1 4 4 C 1.50703 * 109.47114 * 119.99371 * 2 1 3 5 5 H 1.08004 * 119.99707 * 120.00202 * 4 2 1 6 6 C 1.37876 * 120.00355 * 300.00171 * 4 2 1 7 7 N 1.31508 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99844 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46901 * 179.97438 * 8 6 4 10 10 H 1.48491 * 109.47630 * 300.00061 * 8 6 4 11 11 H 1.48502 * 109.46839 * 60.00331 * 8 6 4 12 12 N 1.46495 * 109.47145 * 239.99455 * 2 1 3 13 13 C 1.34783 * 119.99691 * 85.00168 * 12 2 1 14 14 O 1.21356 * 120.00109 * 0.02562 * 13 12 2 15 15 C 1.49351 * 119.99800 * 179.97438 * 13 12 2 16 16 O 1.21381 * 120.00133 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99916 * 179.97438 * 15 13 12 18 18 C 1.39725 * 120.00059 * 174.72350 * 17 15 13 19 19 C 1.38995 * 120.04242 * 326.46867 * 18 17 15 20 20 C 1.38119 * 120.06259 * 179.69448 * 19 18 17 21 21 C 1.38198 * 120.14732 * 0.59938 * 20 19 18 22 22 C 1.38904 * 120.07439 * 359.67454 * 21 20 19 23 23 N 1.39954 * 120.02785 * 180.02562 * 22 21 20 24 24 C 1.47096 * 125.56184 * 359.97438 * 23 22 21 25 25 C 1.54086 * 103.77829 * 180.02562 * 24 23 22 26 26 O 1.45698 * 104.01345 * 0.02562 * 25 24 23 27 27 C 1.33787 * 109.47288 * 359.73427 * 26 25 24 28 28 O 1.21512 * 123.07322 * 180.27140 * 27 26 25 29 29 C 1.38745 * 119.94387 * 0.02614 * 22 21 20 30 30 H 1.09000 * 109.47391 * 60.00016 * 1 2 3 31 31 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46958 * 300.00106 * 1 2 3 33 33 H 0.97002 * 119.99555 * 179.97438 * 7 6 4 34 34 H 0.96999 * 120.00335 * 264.99397 * 12 2 1 35 35 H 0.96994 * 120.00154 * 354.73379 * 17 15 13 36 36 H 1.08004 * 119.96912 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.92958 * 180.27538 * 20 19 18 38 38 H 1.07990 * 119.96262 * 179.70145 * 21 20 19 39 39 H 1.08998 * 110.56167 * 298.57413 * 24 23 22 40 40 H 1.09001 * 110.56091 * 61.27666 * 24 23 22 41 41 H 1.09007 * 110.52143 * 118.63359 * 25 24 23 42 42 H 1.09002 * 110.51976 * 241.36528 * 25 24 23 43 43 H 1.07999 * 120.07821 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 1.8270 -0.4196 5.2205 10 1 1.8260 -2.5200 4.0080 11 1 3.8064 -1.1206 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.8589 1.1592 -2.4116 15 6 2.6454 -0.7223 -3.5764 16 8 2.9341 -1.9001 -3.5218 17 7 2.7737 -0.0502 -4.7375 18 6 3.3427 -0.6775 -5.8488 19 6 4.3531 -1.6164 -5.6763 20 6 4.9115 -2.2414 -6.7741 21 6 4.4767 -1.9268 -8.0476 22 6 3.4714 -0.9853 -8.2272 23 7 3.0314 -0.6679 -9.5173 24 6 3.5458 -1.2534 -10.7648 25 6 2.7222 -0.5558 -11.8645 26 8 1.8397 0.3406 -11.1293 27 6 2.0698 0.2160 -9.8173 28 8 1.4645 0.8487 -8.9748 29 6 2.9036 -0.3599 -7.1265 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7081 1.1610 3.4844 34 1 2.2491 -1.6318 -1.1524 35 1 2.4711 0.8691 -4.8017 36 1 4.6986 -1.8607 -4.6826 37 1 5.6933 -2.9739 -6.6373 38 1 4.9188 -2.4139 -8.9041 39 1 4.6065 -1.0319 -10.8828 40 1 3.3765 -2.3300 -10.7807 41 1 3.3745 0.0109 -12.5290 42 1 2.1420 -1.2861 -12.4285 43 1 2.1221 0.3727 -7.2636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495914279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:41 Heat of formation + Delta-G solvation = -92.356830 kcal Electronic energy + Delta-G solvation = -29319.801881 eV Core-core repulsion = 24945.284019 eV Total energy + Delta-G solvation = -4374.517862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36829 -40.78919 -39.28370 -38.07059 -37.69466 -36.17671 -35.20228 -34.40344 -32.41698 -31.33498 -30.05530 -29.43801 -29.07813 -25.39971 -25.19229 -24.37981 -24.17762 -22.03751 -21.74131 -20.55095 -19.64306 -18.75522 -18.48786 -17.99199 -17.45299 -16.81804 -16.45739 -16.27235 -15.73656 -15.55331 -15.36290 -15.09834 -14.74674 -14.74076 -14.50089 -14.31258 -14.18875 -13.79876 -13.48854 -13.21204 -13.02606 -12.89299 -12.47797 -12.25653 -12.08966 -11.80165 -11.32398 -11.23692 -11.11220 -11.06355 -10.99244 -10.80065 -10.60219 -10.37485 -10.27217 -10.21858 -9.16259 -9.09369 -8.63670 -8.61352 -8.17763 -8.11880 -6.16775 -4.26596 0.90170 1.08562 1.73979 1.86047 2.29851 2.63982 2.84683 3.25734 3.30539 3.32616 3.44588 3.49832 3.74841 3.97052 4.02500 4.09421 4.33602 4.54748 4.60736 4.78286 4.78728 4.85869 5.06021 5.09937 5.14324 5.16203 5.32122 5.45914 5.93596 5.99431 6.14240 6.20760 6.31913 6.72656 6.75779 6.83443 6.85866 7.02723 7.09261 7.22173 7.40311 7.47279 7.61749 7.77547 7.89425 8.05585 8.43094 8.60757 8.84858 9.40268 10.89202 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.001952 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.900585 B =14340.160754 C =15177.817261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.906 3.094 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.276 1.276 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.533 6.533 15 C 0.510 3.490 16 O -0.503 6.503 17 N -0.651 5.651 18 C 0.184 3.816 19 C -0.141 4.141 20 C -0.070 4.070 21 C -0.172 4.172 22 C 0.195 3.805 23 N -0.569 5.569 24 C 0.060 3.940 25 C 0.042 3.958 26 O -0.320 6.320 27 C 0.643 3.357 28 O -0.496 6.496 29 C -0.179 4.179 30 H 0.017 0.983 31 H 0.030 0.970 32 H 0.095 0.905 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.425 0.575 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.423 -6.521 -29.639 31.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.733 3.267 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.273 3.727 14 O -0.411 6.411 15 C 0.293 3.707 16 O -0.376 6.376 17 N -0.297 5.297 18 C 0.088 3.912 19 C -0.162 4.162 20 C -0.089 4.089 21 C -0.193 4.193 22 C 0.103 3.897 23 N -0.306 5.306 24 C -0.063 4.063 25 C -0.033 4.033 26 O -0.230 6.230 27 C 0.397 3.603 28 O -0.379 6.379 29 C -0.202 4.202 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.264 0.736 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.774 -5.857 -29.106 30.691 hybrid contribution 0.370 -0.630 0.618 0.957 sum 8.144 -6.487 -28.488 30.331 Atomic orbital electron populations 1.22103 0.97794 0.99590 1.01263 1.18986 0.91479 0.94155 0.79294 0.92752 1.21147 1.32887 1.13497 0.90012 0.91788 1.24882 0.94702 0.94944 0.99099 1.69882 1.35564 1.22348 1.24192 0.86440 0.79194 0.79597 0.81494 1.21097 1.20057 1.20099 1.46500 1.61312 1.14507 1.09307 1.19630 0.81283 0.87309 0.84487 1.90742 1.50532 1.15191 1.84639 1.20993 0.78058 0.86923 0.84722 1.90736 1.47087 1.15090 1.84691 1.43276 1.59863 1.17625 1.08965 1.17505 0.92635 0.95141 0.85917 1.21242 0.95927 0.98382 1.00624 1.20781 0.98827 0.98405 0.90894 1.20626 0.99632 1.00734 0.98318 1.16964 0.95617 0.96593 0.80540 1.45326 1.37645 1.41584 1.06021 1.22985 1.00751 1.00526 0.82003 1.24369 0.92123 0.92747 0.94095 1.87352 1.58263 1.60175 1.17247 1.18485 0.79667 0.79723 0.82378 1.90989 1.52538 1.48896 1.45476 1.21224 1.03953 1.05457 0.89541 0.96417 0.95084 0.88695 0.92380 0.76322 0.73626 0.84241 0.84841 0.85615 0.87988 0.87987 0.87015 0.87047 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.55 7.58 -51.93 -0.39 1.15 16 4 C -0.54 -14.19 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.91 20.59 29.54 -169.99 -5.02 15.56 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.67 -14.40 5.06 -55.40 -0.28 -14.68 16 13 C 0.49 10.08 7.85 -11.63 -0.09 9.99 16 14 O -0.53 -12.02 16.15 5.49 0.09 -11.93 16 15 C 0.51 8.88 7.62 -11.63 -0.09 8.79 16 16 O -0.50 -9.13 14.17 5.47 0.08 -9.05 16 17 N -0.65 -9.71 5.32 -10.31 -0.05 -9.77 16 18 C 0.18 2.52 6.27 -83.78 -0.53 2.00 16 19 C -0.14 -1.78 8.65 -39.34 -0.34 -2.12 16 20 C -0.07 -0.66 10.03 -39.64 -0.40 -1.06 16 21 C -0.17 -1.43 9.49 -39.35 -0.37 -1.81 16 22 C 0.20 2.05 6.63 -83.72 -0.56 1.49 16 23 N -0.57 -4.92 3.16 -118.29 -0.37 -5.29 16 24 C 0.06 0.18 6.48 -3.15 -0.02 0.16 16 25 C 0.04 0.10 8.23 37.72 0.31 0.41 16 26 O -0.32 -2.77 11.09 -37.87 -0.42 -3.19 16 27 C 0.64 7.26 8.77 53.71 0.47 7.73 16 28 O -0.50 -7.57 14.74 -19.12 -0.28 -7.85 16 29 C -0.18 -2.32 9.22 -39.19 -0.36 -2.69 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.40 8.04 8.01 -40.82 -0.33 7.71 16 35 H 0.43 5.93 8.29 -40.82 -0.34 5.59 16 36 H 0.14 1.91 6.43 -52.48 -0.34 1.58 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.62 7.30 -52.49 -0.38 0.24 16 39 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.11 0.01 8.14 -51.92 -0.42 -0.42 16 42 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.16 2.32 5.24 -52.49 -0.27 2.05 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -34.02 368.84 -7.15 -41.17 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.87 Total: 10.13 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -2.20 Total: 13.23 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.08 Total: -53.63 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.54 Total: -32.02 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.02 -7.15 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495914279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.187 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds