Wall clock time and date at job start Wed Apr 1 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47237 * 2 1 4 4 C 1.50703 * 109.47114 * 119.99371 * 2 1 3 5 5 H 1.08004 * 119.99707 * 120.00202 * 4 2 1 6 6 C 1.37876 * 120.00355 * 300.00171 * 4 2 1 7 7 N 1.31508 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99844 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46901 * 179.97438 * 8 6 4 10 10 H 1.48491 * 109.47630 * 300.00061 * 8 6 4 11 11 H 1.48502 * 109.46839 * 60.00331 * 8 6 4 12 12 N 1.46495 * 109.47145 * 239.99455 * 2 1 3 13 13 C 1.34783 * 119.99691 * 85.00168 * 12 2 1 14 14 O 1.21356 * 120.00109 * 0.02562 * 13 12 2 15 15 C 1.49351 * 119.99800 * 179.97438 * 13 12 2 16 16 O 1.21381 * 120.00133 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99916 * 179.97438 * 15 13 12 18 18 C 1.39725 * 120.00059 * 174.72350 * 17 15 13 19 19 C 1.38995 * 120.04242 * 326.46867 * 18 17 15 20 20 C 1.38119 * 120.06259 * 179.69448 * 19 18 17 21 21 C 1.38198 * 120.14732 * 0.59938 * 20 19 18 22 22 C 1.38904 * 120.07439 * 359.67454 * 21 20 19 23 23 N 1.39954 * 120.02785 * 180.02562 * 22 21 20 24 24 C 1.47096 * 125.56184 * 359.97438 * 23 22 21 25 25 C 1.54086 * 103.77829 * 180.02562 * 24 23 22 26 26 O 1.45698 * 104.01345 * 0.02562 * 25 24 23 27 27 C 1.33787 * 109.47288 * 359.73427 * 26 25 24 28 28 O 1.21512 * 123.07322 * 180.27140 * 27 26 25 29 29 C 1.38745 * 119.94387 * 0.02614 * 22 21 20 30 30 H 1.09000 * 109.47391 * 60.00016 * 1 2 3 31 31 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46958 * 300.00106 * 1 2 3 33 33 H 0.97002 * 119.99555 * 179.97438 * 7 6 4 34 34 H 0.96999 * 120.00335 * 264.99397 * 12 2 1 35 35 H 0.96994 * 120.00154 * 354.73379 * 17 15 13 36 36 H 1.08004 * 119.96912 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.92958 * 180.27538 * 20 19 18 38 38 H 1.07990 * 119.96262 * 179.70145 * 21 20 19 39 39 H 1.08998 * 110.56167 * 298.57413 * 24 23 22 40 40 H 1.09001 * 110.56091 * 61.27666 * 24 23 22 41 41 H 1.09007 * 110.52143 * 118.63359 * 25 24 23 42 42 H 1.09002 * 110.51976 * 241.36528 * 25 24 23 43 43 H 1.07999 * 120.07821 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 1.8270 -0.4196 5.2205 10 1 1.8260 -2.5200 4.0080 11 1 3.8064 -1.1206 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.8589 1.1592 -2.4116 15 6 2.6454 -0.7223 -3.5764 16 8 2.9341 -1.9001 -3.5218 17 7 2.7737 -0.0502 -4.7375 18 6 3.3427 -0.6775 -5.8488 19 6 4.3531 -1.6164 -5.6763 20 6 4.9115 -2.2414 -6.7741 21 6 4.4767 -1.9268 -8.0476 22 6 3.4714 -0.9853 -8.2272 23 7 3.0314 -0.6679 -9.5173 24 6 3.5458 -1.2534 -10.7648 25 6 2.7222 -0.5558 -11.8645 26 8 1.8397 0.3406 -11.1293 27 6 2.0698 0.2160 -9.8173 28 8 1.4645 0.8487 -8.9748 29 6 2.9036 -0.3599 -7.1265 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7081 1.1610 3.4844 34 1 2.2491 -1.6318 -1.1524 35 1 2.4711 0.8691 -4.8017 36 1 4.6986 -1.8607 -4.6826 37 1 5.6933 -2.9739 -6.6373 38 1 4.9188 -2.4139 -8.9041 39 1 4.6065 -1.0319 -10.8828 40 1 3.3765 -2.3300 -10.7807 41 1 3.3745 0.0109 -12.5290 42 1 2.1420 -1.2861 -12.4285 43 1 2.1221 0.3727 -7.2636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495914279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:40 Heat of formation + Delta-G solvation = -117.752285 kcal Electronic energy + Delta-G solvation = -29320.903110 eV Core-core repulsion = 24945.284019 eV Total energy + Delta-G solvation = -4375.619091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.00302 -42.10726 -40.49037 -39.40709 -38.55959 -37.23561 -36.80131 -35.55159 -34.35416 -31.95626 -31.23818 -30.78722 -30.01983 -27.39966 -26.49720 -25.14000 -24.91795 -23.27090 -22.68501 -21.89673 -21.19520 -20.19150 -19.42391 -18.50408 -18.28909 -18.08836 -17.80314 -17.55298 -17.01223 -16.89521 -16.85103 -16.30168 -15.93011 -15.51095 -15.34970 -15.18819 -15.04873 -14.95175 -14.71359 -14.55989 -14.45858 -13.82231 -13.69218 -13.34745 -13.21397 -13.08134 -12.93716 -12.88985 -12.77326 -12.51503 -12.30560 -12.15085 -12.11597 -11.67948 -11.43873 -11.19136 -11.05407 -10.72071 -10.61897 -10.02597 -9.55078 -9.01246 -8.20635 -6.38471 -0.14056 0.20136 0.54617 1.07716 1.30622 1.46385 1.47807 1.50798 1.56089 2.07759 2.37891 2.42852 2.66788 2.76144 3.09983 3.23446 3.41759 3.48304 3.95942 3.99268 4.13219 4.15021 4.27915 4.42756 4.44462 4.58983 4.67168 4.69857 4.71461 4.85768 4.99097 5.11924 5.15136 5.26963 5.27103 5.31701 5.40811 5.44928 5.57863 5.72961 5.88648 5.97252 6.01135 6.18173 6.44519 6.62505 6.70674 6.72068 7.03170 7.33539 8.85447 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.001952 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.900585 B =14340.160754 C =15177.817261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.014 0.986 4 C -0.553 4.553 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.975 3.025 9 H -0.284 1.284 10 H -0.266 1.266 11 H -0.270 1.270 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.558 6.558 15 C 0.521 3.479 16 O -0.511 6.511 17 N -0.640 5.640 18 C 0.155 3.845 19 C -0.157 4.157 20 C -0.061 4.061 21 C -0.145 4.145 22 C 0.191 3.809 23 N -0.566 5.566 24 C 0.054 3.946 25 C 0.035 3.965 26 O -0.339 6.339 27 C 0.636 3.364 28 O -0.553 6.553 29 C -0.197 4.197 30 H 0.018 0.982 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.268 0.732 34 H 0.411 0.589 35 H 0.426 0.574 36 H 0.125 0.875 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 -9.469 -32.376 35.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.165 3.835 3 H 0.032 0.968 4 C -0.591 4.591 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.551 5.551 8 Si 0.799 3.201 9 H -0.209 1.209 10 H -0.190 1.190 11 H -0.196 1.196 12 N -0.317 5.317 13 C 0.275 3.725 14 O -0.438 6.438 15 C 0.303 3.697 16 O -0.385 6.385 17 N -0.286 5.286 18 C 0.061 3.939 19 C -0.178 4.178 20 C -0.080 4.080 21 C -0.166 4.166 22 C 0.097 3.903 23 N -0.302 5.302 24 C -0.066 4.066 25 C -0.038 4.038 26 O -0.248 6.248 27 C 0.391 3.609 28 O -0.441 6.441 29 C -0.219 4.219 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.247 0.753 35 H 0.265 0.735 36 H 0.142 0.858 37 H 0.186 0.814 38 H 0.193 0.807 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.175 -8.845 -31.948 34.677 hybrid contribution -0.309 0.294 1.206 1.279 sum 9.867 -8.551 -30.742 33.400 Atomic orbital electron populations 1.21938 0.97514 0.99844 1.00275 1.18641 0.91677 0.92432 0.80729 0.96765 1.21447 1.33178 1.13846 0.90587 0.90954 1.25773 0.94739 0.95576 1.02199 1.70019 1.36492 1.23648 1.24926 0.85353 0.78667 0.78638 0.77431 1.20906 1.19033 1.19556 1.46247 1.61731 1.14819 1.08904 1.20114 0.80292 0.87005 0.85131 1.90721 1.51384 1.16474 1.85236 1.20176 0.78516 0.86586 0.84415 1.90727 1.47966 1.15046 1.84789 1.43149 1.59189 1.17567 1.08743 1.17671 0.94145 0.96718 0.85412 1.21304 0.96325 0.98872 1.01300 1.21194 0.98707 0.97915 0.90206 1.21087 0.97432 0.98617 0.99442 1.17149 0.95830 0.96577 0.80698 1.45440 1.36846 1.40948 1.07010 1.23510 1.02236 1.01823 0.79045 1.24932 0.92142 0.92875 0.93864 1.87319 1.59693 1.61606 1.16219 1.18758 0.79689 0.79620 0.82807 1.90944 1.54627 1.51104 1.47401 1.21146 1.04346 1.05990 0.90427 0.96320 0.94051 0.90682 0.92298 0.75260 0.73548 0.85752 0.81392 0.80746 0.85009 0.85238 0.84241 0.84435 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.98 9.26 71.98 0.67 -6.31 16 2 C 0.27 14.02 2.56 44.25 0.11 14.13 16 3 H 0.01 0.87 7.58 -2.39 -0.02 0.85 16 4 C -0.55 -29.58 8.73 25.60 0.22 -29.36 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -51.84 11.32 21.45 0.24 -51.60 16 8 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 N -0.67 -29.71 5.06 -447.54 -2.27 -31.98 16 13 C 0.49 21.04 7.85 87.24 0.68 21.73 16 14 O -0.56 -26.55 16.15 -3.27 -0.05 -26.61 16 15 C 0.52 18.80 7.62 87.24 0.66 19.47 16 16 O -0.51 -18.82 14.17 -3.34 -0.05 -18.86 16 17 N -0.64 -20.19 5.32 -304.89 -1.62 -21.81 16 18 C 0.15 4.35 6.27 38.20 0.24 4.59 16 19 C -0.16 -3.83 8.65 22.42 0.19 -3.64 16 20 C -0.06 -0.94 10.03 22.23 0.22 -0.72 16 21 C -0.15 -1.77 9.49 22.42 0.21 -1.56 16 22 C 0.19 3.63 6.63 38.12 0.25 3.88 16 23 N -0.57 -8.51 3.16 -759.86 -2.40 -10.92 16 24 C 0.05 0.07 6.48 86.63 0.56 0.63 16 25 C 0.03 0.04 8.23 72.35 0.60 0.64 16 26 O -0.34 -5.49 11.09 -47.46 -0.53 -6.01 16 27 C 0.64 14.31 8.77 129.91 1.14 15.45 16 28 O -0.55 -18.10 14.74 19.64 0.29 -17.81 16 29 C -0.20 -5.23 9.22 22.52 0.21 -5.03 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 4.13 6.07 -2.38 -0.01 4.12 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.41 16.72 8.01 -92.71 -0.74 15.98 16 35 H 0.43 12.95 8.29 -92.71 -0.77 12.18 16 36 H 0.12 3.40 6.43 -2.91 -0.02 3.38 16 37 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.18 0.46 7.30 -2.92 -0.02 0.43 16 39 H 0.13 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.13 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.14 -0.60 8.14 -2.38 -0.02 -0.62 16 42 H 0.14 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.14 4.37 5.24 -2.91 -0.02 4.36 16 Total: -1.00 -79.66 368.84 1.66 -78.00 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.41 Total: 28.11 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 6.43 Total: 35.31 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -6.05 Total: -116.31 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -0.34 Total: -69.29 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -79.66 1.66 -78.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495914279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.751 kcal (2) G-P(sol) polarization free energy of solvation -79.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds