Wall clock time and date at job start Wed Apr 1 2020 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47627 * 2 1 4 4 C 1.50697 * 109.47010 * 239.99727 * 2 1 3 5 5 H 1.08003 * 120.00269 * 240.00645 * 4 2 1 6 6 C 1.37875 * 120.00112 * 60.00618 * 4 2 1 7 7 N 1.31518 * 119.99631 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00191 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47275 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47552 * 119.99998 * 8 6 4 11 11 H 1.48504 * 109.47087 * 239.99775 * 8 6 4 12 12 N 1.46506 * 109.46671 * 120.00188 * 2 1 3 13 13 C 1.46502 * 120.00055 * 59.99644 * 12 2 1 14 14 S 1.65601 * 119.99674 * 239.99682 * 12 2 1 15 15 O 1.42098 * 106.40144 * 336.45977 * 14 12 2 16 16 O 1.42100 * 106.40035 * 203.54000 * 14 12 2 17 17 N 1.65595 * 107.21794 * 90.00323 * 14 12 2 18 18 C 1.46986 * 120.69482 * 89.99848 * 17 14 12 19 19 C 1.53272 * 108.58658 * 124.23080 * 18 17 14 20 20 N 1.47567 * 108.62941 * 50.06532 * 19 18 17 21 21 C 1.34197 * 118.31651 * 124.87594 * 20 19 18 22 22 O 1.21515 * 118.94756 * 357.48701 * 21 20 19 23 23 O 1.34390 * 122.10725 * 177.51288 * 21 20 19 24 24 C 1.45653 * 115.52322 * 335.15863 * 23 21 20 25 25 C 1.52960 * 107.98005 * 54.33758 * 24 23 21 26 26 C 1.45989 * 118.44394 * 304.70261 * 20 19 18 27 27 H 1.09002 * 108.72594 * 296.22882 * 26 20 19 28 28 C 1.46944 * 120.68915 * 269.71910 * 17 14 12 29 29 H 1.09002 * 109.47298 * 300.00476 * 1 2 3 30 30 H 1.09007 * 109.46731 * 59.99900 * 1 2 3 31 31 H 1.08991 * 109.47627 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99560 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47015 * 269.99787 * 13 12 2 34 34 H 1.09002 * 109.47117 * 30.00079 * 13 12 2 35 35 H 1.08999 * 109.46721 * 149.99672 * 13 12 2 36 36 H 1.08997 * 109.61805 * 243.96783 * 18 17 14 37 37 H 1.08999 * 109.61480 * 4.32113 * 18 17 14 38 38 H 1.09005 * 109.60414 * 169.80230 * 19 18 17 39 39 H 1.08994 * 109.61104 * 290.31861 * 19 18 17 40 40 H 1.08997 * 109.75273 * 294.72224 * 24 23 21 41 41 H 1.08994 * 109.80159 * 173.98752 * 24 23 21 42 42 H 1.09003 * 109.26149 * 181.77752 * 25 24 23 43 43 H 1.08991 * 109.26972 * 62.31075 * 25 24 23 44 44 H 1.08999 * 109.60009 * 354.71266 * 28 17 14 45 45 H 1.08996 * 109.60217 * 115.18366 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3213 -1.1204 -4.0078 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6907 1.1962 13 6 1.6642 -2.0933 1.4280 14 16 2.9703 0.1141 2.2863 15 8 3.5794 1.1828 1.5749 16 8 3.7117 -0.8790 2.9815 17 7 1.9607 0.8089 3.3998 18 6 1.5701 0.0811 4.6156 19 6 1.9397 0.9331 5.8350 20 7 1.4120 2.2966 5.6347 21 6 0.6087 2.8131 6.5775 22 8 0.3084 2.1272 7.5346 23 8 0.1254 4.0645 6.4969 24 6 0.9148 4.9919 5.6981 25 6 1.1095 4.3742 4.3124 26 6 1.7919 3.0184 4.4240 27 1 2.8692 3.1837 4.4386 28 6 1.4414 2.1684 3.1960 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0275 0.0005 32 1 0.7083 1.1609 -3.4844 33 1 0.7373 -2.1444 1.9994 34 1 1.5293 -2.5969 0.4708 35 1 2.4627 -2.5820 1.9864 36 1 0.4949 -0.0972 4.6059 37 1 2.0985 -0.8713 4.6576 38 1 1.4988 0.4983 6.7321 39 1 3.0239 0.9720 5.9390 40 1 1.8844 5.1515 6.1699 41 1 0.3883 5.9419 5.6075 42 1 1.7257 5.0382 3.7060 43 1 0.1380 4.2497 3.8343 44 1 1.8975 2.6046 2.3073 45 1 0.3589 2.1318 3.0736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496674025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:12 Heat of formation + Delta-G solvation = -132.114441 kcal Electronic energy + Delta-G solvation = -30991.052777 eV Core-core repulsion = 26750.254847 eV Total energy + Delta-G solvation = -4240.797930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.36196 -38.15791 -37.49951 -36.89565 -36.23030 -35.37707 -34.31359 -33.04873 -32.64894 -30.09867 -29.17374 -27.22871 -25.58230 -25.24477 -25.08521 -23.12077 -22.27384 -20.80092 -19.86455 -19.04021 -18.00991 -17.39532 -17.06725 -17.00953 -16.41964 -16.26409 -16.02245 -15.34001 -14.96475 -14.92354 -14.57252 -14.48050 -14.23380 -13.76886 -13.50846 -13.36093 -12.80916 -12.67114 -12.55084 -12.50968 -12.10394 -11.98214 -11.93089 -11.89213 -11.57697 -11.45929 -11.31207 -11.28269 -11.13108 -10.99096 -10.89922 -10.83246 -10.50649 -10.40572 -10.29855 -10.14219 -9.67857 -9.34669 -8.71403 -8.52298 -8.05123 -6.15004 -4.21465 0.98341 2.26556 2.46529 3.21710 3.22896 3.26368 3.31502 3.35702 3.87481 4.09479 4.21498 4.33913 4.49755 4.55786 4.66201 4.79549 4.86366 4.97248 5.04627 5.10741 5.17207 5.22784 5.29751 5.47830 5.50323 5.62744 5.66353 5.71995 5.88201 5.94937 6.05567 6.23452 6.30129 6.44738 6.59585 6.73147 6.76495 6.94749 7.36814 7.46418 7.54510 7.70651 7.86214 7.96575 8.19372 8.80751 9.44722 10.90685 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.003478 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.110605 B = 8048.515686 C = 8716.582785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.987 5.987 13 C 0.096 3.904 14 S 2.776 3.224 15 O -0.970 6.970 16 O -0.991 6.991 17 N -1.012 6.012 18 C 0.107 3.893 19 C 0.108 3.892 20 N -0.611 5.611 21 C 0.655 3.345 22 O -0.535 6.535 23 O -0.344 6.344 24 C 0.064 3.936 25 C -0.169 4.169 26 C 0.126 3.874 27 H 0.086 0.914 28 C 0.114 3.886 29 H 0.009 0.991 30 H 0.092 0.908 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 5.820 13.598 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.830 5.830 13 C -0.050 4.050 14 S 2.786 3.214 15 O -0.954 6.954 16 O -0.975 6.975 17 N -0.849 5.849 18 C -0.020 4.020 19 C -0.015 4.015 20 N -0.357 5.357 21 C 0.409 3.591 22 O -0.420 6.420 23 O -0.256 6.256 24 C -0.011 4.011 25 C -0.207 4.207 26 C 0.020 3.980 27 H 0.104 0.896 28 C -0.013 4.013 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.111 0.889 44 H 0.129 0.871 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.143 5.796 14.032 15.183 hybrid contribution -0.082 -0.381 -1.204 1.265 sum -0.225 5.416 12.828 13.926 Atomic orbital electron populations 1.22106 0.98165 0.99840 1.00440 1.18738 0.91323 0.92901 0.80514 0.92520 1.21361 1.31626 1.13064 0.90009 0.91851 1.24899 0.94888 0.94998 0.99019 1.69862 1.36484 1.22735 1.23743 0.86443 0.78634 0.79704 0.82653 1.19705 1.20951 1.20858 1.57713 1.69872 1.19920 1.35470 1.21315 0.98756 0.82206 1.02770 1.02125 0.73777 0.73152 0.72309 1.93590 1.73846 1.55919 1.72014 1.93523 1.69122 1.60256 1.74577 1.58488 1.67733 1.23909 1.34761 1.21755 1.01613 0.95344 0.83294 1.22154 0.99460 0.80224 0.99658 1.47483 1.50098 1.17802 1.20307 1.17984 0.77578 0.81363 0.82193 1.90963 1.61081 1.57581 1.32422 1.86914 1.50196 1.19403 1.69047 1.23339 0.96352 0.91906 0.89481 1.22301 1.04060 0.95843 0.98502 1.21248 1.00421 0.91319 0.84966 0.89608 1.21825 1.00552 0.81472 0.97461 0.97229 0.88929 0.94817 0.92717 0.94411 0.89746 0.91920 0.90793 0.87579 0.87034 0.90398 0.90559 0.86299 0.87237 0.88934 0.87067 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.97 37.16 0.33 -2.81 16 2 C 0.27 6.19 2.62 -69.08 -0.18 6.01 16 3 H 0.06 1.43 6.91 -51.93 -0.36 1.07 16 4 C -0.52 -13.47 7.99 -34.44 -0.28 -13.74 16 5 H 0.06 1.64 7.33 -52.48 -0.38 1.26 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.75 11.32 55.43 0.63 -23.12 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.99 -19.30 3.12 -115.85 -0.36 -19.66 16 13 C 0.10 1.62 9.65 59.85 0.58 2.20 16 14 S 2.78 50.34 6.14 -107.50 -0.66 49.68 16 15 O -0.97 -20.56 15.30 -57.17 -0.87 -21.43 16 16 O -0.99 -18.88 15.35 -57.17 -0.88 -19.76 16 17 N -1.01 -14.05 3.33 -113.30 -0.38 -14.42 16 18 C 0.11 1.25 6.61 -3.64 -0.02 1.22 16 19 C 0.11 1.20 6.50 -3.32 -0.02 1.18 16 20 N -0.61 -7.06 2.94 -171.70 -0.50 -7.57 16 21 C 0.65 8.84 8.30 53.80 0.45 9.29 16 22 O -0.54 -8.94 16.25 -19.37 -0.31 -9.26 16 23 O -0.34 -4.07 10.57 -39.72 -0.42 -4.49 16 24 C 0.06 0.44 7.15 37.14 0.27 0.71 16 25 C -0.17 -1.19 5.65 -27.16 -0.15 -1.35 16 26 C 0.13 1.26 3.19 -68.40 -0.22 1.04 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 C 0.11 1.39 5.85 -3.59 -0.02 1.37 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 2.23 6.07 -51.92 -0.32 1.91 16 31 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 32 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.51 7.02 -51.93 -0.36 1.15 16 35 H 0.06 0.99 7.02 -51.93 -0.36 0.62 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.20 6.95 -51.93 -0.36 0.84 16 38 H 0.11 1.24 6.73 -51.93 -0.35 0.89 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.67 7.76 -51.93 -0.40 0.26 16 44 H 0.11 1.45 6.93 -51.93 -0.36 1.09 16 45 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -33.48 364.75 -9.24 -42.72 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.59 Total: -0.34 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 0.63 Total: 6.70 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.62 Total: -64.78 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -2.49 Total: -54.94 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 50.34 SS G_CDS: -0.66 Total: 49.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.48 -9.24 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496674025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.391 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds