Wall clock time and date at job start Wed Apr 1 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47627 * 2 1 4 4 C 1.50697 * 109.47010 * 239.99727 * 2 1 3 5 5 H 1.08003 * 120.00269 * 240.00645 * 4 2 1 6 6 C 1.37875 * 120.00112 * 60.00618 * 4 2 1 7 7 N 1.31518 * 119.99631 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00191 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47275 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47552 * 119.99998 * 8 6 4 11 11 H 1.48504 * 109.47087 * 239.99775 * 8 6 4 12 12 N 1.46506 * 109.46671 * 120.00188 * 2 1 3 13 13 C 1.46502 * 120.00055 * 59.99644 * 12 2 1 14 14 S 1.65601 * 119.99674 * 239.99682 * 12 2 1 15 15 O 1.42098 * 106.40144 * 336.45977 * 14 12 2 16 16 O 1.42100 * 106.40035 * 203.54000 * 14 12 2 17 17 N 1.65595 * 107.21794 * 90.00323 * 14 12 2 18 18 C 1.46986 * 120.69482 * 89.99848 * 17 14 12 19 19 C 1.53272 * 108.58658 * 124.23080 * 18 17 14 20 20 N 1.47567 * 108.62941 * 50.06532 * 19 18 17 21 21 C 1.34197 * 118.31651 * 124.87594 * 20 19 18 22 22 O 1.21515 * 118.94756 * 357.48701 * 21 20 19 23 23 O 1.34390 * 122.10725 * 177.51288 * 21 20 19 24 24 C 1.45653 * 115.52322 * 335.15863 * 23 21 20 25 25 C 1.52960 * 107.98005 * 54.33758 * 24 23 21 26 26 C 1.45989 * 118.44394 * 304.70261 * 20 19 18 27 27 H 1.09002 * 108.72594 * 296.22882 * 26 20 19 28 28 C 1.46944 * 120.68915 * 269.71910 * 17 14 12 29 29 H 1.09002 * 109.47298 * 300.00476 * 1 2 3 30 30 H 1.09007 * 109.46731 * 59.99900 * 1 2 3 31 31 H 1.08991 * 109.47627 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99560 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47015 * 269.99787 * 13 12 2 34 34 H 1.09002 * 109.47117 * 30.00079 * 13 12 2 35 35 H 1.08999 * 109.46721 * 149.99672 * 13 12 2 36 36 H 1.08997 * 109.61805 * 243.96783 * 18 17 14 37 37 H 1.08999 * 109.61480 * 4.32113 * 18 17 14 38 38 H 1.09005 * 109.60414 * 169.80230 * 19 18 17 39 39 H 1.08994 * 109.61104 * 290.31861 * 19 18 17 40 40 H 1.08997 * 109.75273 * 294.72224 * 24 23 21 41 41 H 1.08994 * 109.80159 * 173.98752 * 24 23 21 42 42 H 1.09003 * 109.26149 * 181.77752 * 25 24 23 43 43 H 1.08991 * 109.26972 * 62.31075 * 25 24 23 44 44 H 1.08999 * 109.60009 * 354.71266 * 28 17 14 45 45 H 1.08996 * 109.60217 * 115.18366 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3213 -1.1204 -4.0078 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6907 1.1962 13 6 1.6642 -2.0933 1.4280 14 16 2.9703 0.1141 2.2863 15 8 3.5794 1.1828 1.5749 16 8 3.7117 -0.8790 2.9815 17 7 1.9607 0.8089 3.3998 18 6 1.5701 0.0811 4.6156 19 6 1.9397 0.9331 5.8350 20 7 1.4120 2.2966 5.6347 21 6 0.6087 2.8131 6.5775 22 8 0.3084 2.1272 7.5346 23 8 0.1254 4.0645 6.4969 24 6 0.9148 4.9919 5.6981 25 6 1.1095 4.3742 4.3124 26 6 1.7919 3.0184 4.4240 27 1 2.8692 3.1837 4.4386 28 6 1.4414 2.1684 3.1960 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0275 0.0005 32 1 0.7083 1.1609 -3.4844 33 1 0.7373 -2.1444 1.9994 34 1 1.5293 -2.5969 0.4708 35 1 2.4627 -2.5820 1.9864 36 1 0.4949 -0.0972 4.6059 37 1 2.0985 -0.8713 4.6576 38 1 1.4988 0.4983 6.7321 39 1 3.0239 0.9720 5.9390 40 1 1.8844 5.1515 6.1699 41 1 0.3883 5.9419 5.6075 42 1 1.7257 5.0382 3.7060 43 1 0.1380 4.2497 3.8343 44 1 1.8975 2.6046 2.3073 45 1 0.3589 2.1318 3.0736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496674025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:11 Heat of formation + Delta-G solvation = -156.523538 kcal Electronic energy + Delta-G solvation = -30992.111234 eV Core-core repulsion = 26750.254847 eV Total energy + Delta-G solvation = -4241.856388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25552 -39.12579 -38.51073 -38.35818 -37.87886 -36.91469 -35.29790 -34.51526 -33.92443 -30.95401 -30.84945 -28.18658 -27.23462 -26.98998 -25.91887 -24.01395 -23.25651 -22.50215 -20.64231 -20.16605 -19.33679 -18.64888 -18.43808 -18.17838 -17.96611 -17.30092 -17.25434 -16.70388 -16.25839 -15.81173 -15.75401 -15.47038 -15.25976 -15.07395 -14.89972 -14.56339 -14.34171 -13.85307 -13.67964 -13.62605 -13.47392 -13.44900 -13.16457 -13.05395 -13.01085 -12.78771 -12.72288 -12.61967 -12.58513 -12.28880 -12.26849 -12.13555 -12.10006 -11.90378 -11.60549 -11.34118 -11.16885 -10.72336 -10.49881 -9.75750 -9.60465 -8.11848 -6.24392 -0.43205 1.37421 1.41549 1.45258 1.50080 1.54747 1.96693 2.41446 2.45215 2.51522 3.17006 3.21888 3.41980 3.50533 3.69872 3.84861 4.00847 4.08997 4.14506 4.17528 4.23199 4.24691 4.47556 4.62189 4.66220 4.71115 4.73588 4.76151 4.78577 4.90191 4.99802 5.02259 5.03999 5.10321 5.15382 5.25046 5.37819 5.42499 5.62007 5.76075 5.88149 6.14320 6.30737 6.57062 6.82821 6.88432 7.44436 8.92245 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.003478 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.110605 B = 8048.515686 C = 8716.582785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.031 0.969 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.283 1.283 12 N -0.998 5.998 13 C 0.092 3.908 14 S 2.791 3.209 15 O -1.005 7.005 16 O -1.002 7.002 17 N -1.004 6.004 18 C 0.106 3.894 19 C 0.108 3.892 20 N -0.606 5.606 21 C 0.655 3.345 22 O -0.577 6.577 23 O -0.359 6.359 24 C 0.060 3.940 25 C -0.165 4.165 26 C 0.125 3.875 27 H 0.094 0.906 28 C 0.108 3.892 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 6.346 14.174 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.048 0.952 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.209 1.209 12 N -0.839 5.839 13 C -0.053 4.053 14 S 2.802 3.198 15 O -0.989 6.989 16 O -0.986 6.986 17 N -0.844 5.844 18 C -0.020 4.020 19 C -0.016 4.016 20 N -0.351 5.351 21 C 0.410 3.590 22 O -0.465 6.465 23 O -0.271 6.271 24 C -0.014 4.014 25 C -0.203 4.203 26 C 0.020 3.980 27 H 0.112 0.888 28 C -0.018 4.018 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.167 0.833 42 H 0.155 0.845 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.344 6.319 14.586 15.899 hybrid contribution 0.003 -0.495 -1.336 1.424 sum -0.341 5.824 13.250 14.477 Atomic orbital electron populations 1.21890 0.96971 0.99977 1.00341 1.18398 0.92070 0.91502 0.81011 0.95166 1.21678 1.31591 1.13034 0.91540 0.92660 1.25563 0.95200 0.95696 1.01430 1.69961 1.37159 1.23586 1.24262 0.85614 0.78247 0.78671 0.79741 1.19584 1.20201 1.20919 1.57641 1.69984 1.21070 1.35190 1.21456 1.00513 0.80777 1.02600 1.01446 0.73704 0.72443 0.72164 1.93540 1.75067 1.57019 1.73227 1.93501 1.69746 1.60739 1.74571 1.58126 1.67297 1.24614 1.34345 1.21934 1.02287 0.95495 0.82302 1.22190 1.00031 0.80129 0.99219 1.47526 1.49364 1.17909 1.20307 1.18062 0.77244 0.81747 0.81937 1.90926 1.62646 1.58868 1.34045 1.86885 1.51009 1.19143 1.70061 1.23746 0.97090 0.91859 0.88656 1.22353 1.04343 0.94489 0.99127 1.21386 1.01349 0.92133 0.83121 0.88805 1.22000 1.00774 0.80693 0.98332 0.94747 0.91495 0.94440 0.92636 0.91636 0.91142 0.90878 0.89829 0.86974 0.86967 0.89470 0.89258 0.83263 0.84516 0.88870 0.88004 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.97 71.98 0.65 -4.98 16 2 C 0.27 12.71 2.62 44.24 0.12 12.82 16 3 H 0.03 1.57 6.91 -2.39 -0.02 1.55 16 4 C -0.54 -28.07 7.99 25.60 0.20 -27.87 16 5 H 0.06 2.89 7.33 -2.91 -0.02 2.87 16 6 C 0.02 1.12 5.30 84.65 0.45 1.56 16 7 N -0.91 -48.96 11.32 21.45 0.24 -48.71 16 8 Si 0.95 41.98 29.54 68.60 2.03 44.00 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -1.00 -38.46 3.12 -520.44 -1.62 -40.08 16 13 C 0.09 3.01 9.65 127.77 1.23 4.24 16 14 S 2.79 99.57 6.14 -56.49 -0.35 99.22 16 15 O -1.00 -42.84 15.30 -128.00 -1.96 -44.79 16 16 O -1.00 -37.20 15.35 -128.00 -1.96 -39.16 16 17 N -1.00 -26.50 3.33 -512.36 -1.70 -28.20 16 18 C 0.11 2.29 6.61 86.38 0.57 2.86 16 19 C 0.11 2.23 6.50 86.27 0.56 2.79 16 20 N -0.61 -12.99 2.94 -928.31 -2.73 -15.72 16 21 C 0.66 16.90 8.30 129.88 1.08 17.98 16 22 O -0.58 -19.03 16.25 19.87 0.32 -18.71 16 23 O -0.36 -7.87 10.57 -52.94 -0.56 -8.43 16 24 C 0.06 0.65 7.15 71.97 0.51 1.17 16 25 C -0.17 -1.86 5.65 30.32 0.17 -1.69 16 26 C 0.13 2.24 3.19 44.96 0.14 2.38 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 C 0.11 2.48 5.85 86.43 0.51 2.99 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 3.22 6.07 -2.38 -0.01 3.21 16 31 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 32 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.48 7.02 -2.39 -0.02 2.47 16 35 H 0.07 2.21 7.02 -2.39 -0.02 2.19 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.11 2.32 6.95 -2.39 -0.02 2.31 16 38 H 0.11 2.37 6.73 -2.38 -0.02 2.36 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.14 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.09 1.09 7.76 -2.39 -0.02 1.07 16 44 H 0.10 2.58 6.93 -2.39 -0.02 2.56 16 45 H 0.08 1.78 7.95 -2.39 -0.02 1.76 16 Total: -1.00 -72.48 364.75 -1.10 -73.58 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.00 Total: 12.76 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.19 Total: 14.25 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -5.81 Total: -132.72 kcal Atomic # 8 Polarization: -106.94 SS G_CDS: -4.16 Total: -111.10 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 99.57 SS G_CDS: -0.35 Total: 99.22 kcal Total: -72.48 -1.10 -73.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496674025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.946 kcal (2) G-P(sol) polarization free energy of solvation -72.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds