Wall clock time and date at job start Wed Apr 1 2020 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 N 1.65597 * 107.21687 * 89.99960 * 14 12 2 18 18 C 1.46990 * 120.68156 * 269.72378 * 17 14 12 19 19 C 1.52798 * 108.85330 * 235.41198 * 18 17 14 20 20 N 1.47566 * 108.67491 * 310.18061 * 19 18 17 21 21 C 1.34190 * 118.33760 * 234.82350 * 20 19 18 22 22 O 1.21513 * 118.93805 * 2.78273 * 21 20 19 23 23 O 1.34384 * 122.12223 * 182.76876 * 21 20 19 24 24 C 1.45645 * 115.55614 * 24.66560 * 23 21 20 25 25 C 1.52110 * 107.27962 * 305.47108 * 24 23 21 26 26 C 1.45998 * 118.42322 * 55.20619 * 20 19 18 27 27 H 1.09002 * 108.72618 * 63.68009 * 26 20 19 28 28 C 1.46949 * 120.68808 * 89.99987 * 17 14 12 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 34 34 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 35 35 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 36 36 H 1.08999 * 109.61412 * 355.18515 * 18 17 14 37 37 H 1.08997 * 109.61206 * 115.72009 * 18 17 14 38 38 H 1.08998 * 109.69967 * 190.35850 * 19 18 17 39 39 H 1.09000 * 109.61682 * 69.95642 * 19 18 17 40 40 H 1.08998 * 109.75597 * 65.40511 * 24 23 21 41 41 H 1.09002 * 109.75706 * 186.15646 * 24 23 21 42 42 H 1.08996 * 109.69848 * 298.33675 * 25 24 23 43 43 H 1.08994 * 108.42657 * 179.24183 * 25 24 23 44 44 H 1.09000 * 109.60252 * 245.10496 * 28 17 14 45 45 H 1.09006 * 109.59574 * 5.57487 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 7 1.9608 0.8090 3.3998 18 6 1.4413 2.1688 3.1957 19 6 1.7987 3.0217 4.4121 20 7 1.3994 2.2947 5.6326 21 6 0.5872 2.9118 6.5045 22 8 0.1700 4.0210 6.2358 23 8 0.2201 2.3425 7.6651 24 6 1.1323 1.3339 8.1865 25 6 1.3377 0.3002 7.0897 26 6 1.9138 0.9437 5.8364 27 1 2.9982 0.9933 5.9354 28 6 1.5704 0.0812 4.6153 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1613 -3.4844 33 1 2.4157 -2.7377 0.9718 34 1 1.6238 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9846 36 1 1.8910 2.6020 2.3022 37 1 0.3578 2.1334 3.0828 38 1 1.2683 3.9726 4.3627 39 1 2.8734 3.2027 4.4291 40 1 2.0818 1.7983 8.4527 41 1 0.6943 0.8597 9.0648 42 1 0.3858 -0.1721 6.8471 43 1 2.0297 -0.4580 7.4560 44 1 0.4984 -0.1147 4.5958 45 1 2.1158 -0.8611 4.6682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496674027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:16 Heat of formation + Delta-G solvation = -130.608361 kcal Electronic energy + Delta-G solvation = -30939.339823 eV Core-core repulsion = 26698.607202 eV Total energy + Delta-G solvation = -4240.732621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.41138 -38.18191 -37.53680 -36.89150 -36.23496 -35.37198 -34.32821 -33.09035 -32.63433 -30.16911 -29.15570 -27.26252 -25.67977 -25.21761 -25.05809 -23.16702 -22.25510 -20.75937 -19.92105 -19.06447 -18.02220 -17.39775 -17.05954 -17.02672 -16.41351 -16.31682 -15.95492 -15.37753 -15.01885 -14.94847 -14.60796 -14.44420 -14.26458 -13.76783 -13.57678 -13.34344 -12.90017 -12.73141 -12.54811 -12.52731 -12.12315 -11.95761 -11.94536 -11.83026 -11.61463 -11.44046 -11.32296 -11.28288 -11.14369 -11.03011 -10.88402 -10.81949 -10.51657 -10.42308 -10.33997 -10.08033 -9.68155 -9.30959 -8.72195 -8.49733 -8.04357 -6.11566 -4.18432 0.97523 2.24421 2.46596 3.20023 3.25502 3.25937 3.33062 3.37124 3.85683 4.04714 4.15529 4.36543 4.40699 4.52681 4.63779 4.76601 4.84881 4.91624 5.04045 5.11794 5.15489 5.19838 5.28141 5.37691 5.49173 5.54701 5.56580 5.79888 5.90444 5.93379 6.05438 6.24958 6.28951 6.44480 6.56555 6.71512 6.75602 6.95594 7.37993 7.45722 7.57270 7.73106 7.86694 7.98709 8.22111 8.83591 9.47730 10.94046 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.003304 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.783673 B = 8472.140422 C = 8961.075770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.111 3.889 14 S 2.776 3.224 15 O -0.992 6.992 16 O -0.967 6.967 17 N -1.012 6.012 18 C 0.106 3.894 19 C 0.107 3.893 20 N -0.612 5.612 21 C 0.654 3.346 22 O -0.532 6.532 23 O -0.345 6.345 24 C 0.064 3.936 25 C -0.169 4.169 26 C 0.127 3.873 27 H 0.087 0.913 28 C 0.114 3.886 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 -2.320 19.348 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.036 4.036 14 S 2.786 3.214 15 O -0.976 6.976 16 O -0.951 6.951 17 N -0.849 5.849 18 C -0.020 4.020 19 C -0.015 4.015 20 N -0.358 5.358 21 C 0.408 3.592 22 O -0.417 6.417 23 O -0.257 6.257 24 C -0.010 4.010 25 C -0.207 4.207 26 C 0.022 3.978 27 H 0.105 0.895 28 C -0.014 4.014 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.111 -1.561 19.251 19.314 hybrid contribution -0.022 -0.796 -0.933 1.226 sum 0.089 -2.357 18.318 18.469 Atomic orbital electron populations 1.22119 0.98220 0.99725 1.00644 1.18750 0.91305 0.92943 0.80479 0.92389 1.21311 1.31737 1.13045 0.90002 0.91983 1.24905 0.94938 0.94980 0.99012 1.69851 1.36464 1.22592 1.23867 0.86492 0.79285 0.79298 0.82315 1.20652 1.21085 1.19839 1.57758 1.69969 1.19796 1.35580 1.21139 1.01830 0.82050 0.98564 1.02150 0.73763 0.73137 0.72321 1.93523 1.69057 1.60350 1.74706 1.93600 1.73724 1.55847 1.71920 1.58505 1.67790 1.24461 1.34131 1.21706 1.00614 0.81117 0.98574 1.22114 1.01213 0.96363 0.81859 1.47511 1.49867 1.15806 1.22622 1.17974 0.78186 0.83457 0.79562 1.90979 1.57321 1.17156 1.76202 1.86911 1.48346 1.54593 1.35899 1.23208 0.93719 0.87381 0.96706 1.22138 1.04511 0.99684 0.94385 1.21248 0.99405 0.81974 0.95199 0.89542 1.21789 1.01567 0.94901 0.83103 0.88829 0.97082 0.94799 0.92637 0.93192 0.93534 0.90915 0.87012 0.90580 0.86881 0.90386 0.90458 0.86383 0.88975 0.87611 0.90785 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.95 37.16 0.33 -2.88 16 2 C 0.27 6.27 2.62 -69.08 -0.18 6.09 16 3 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 4 C -0.52 -13.66 8.37 -34.44 -0.29 -13.95 16 5 H 0.06 1.62 7.65 -52.48 -0.40 1.22 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.99 -19.34 3.12 -115.85 -0.36 -19.71 16 13 C 0.11 1.84 9.53 59.85 0.57 2.41 16 14 S 2.78 50.38 6.10 -107.50 -0.66 49.73 16 15 O -0.99 -18.54 15.81 -57.17 -0.90 -19.45 16 16 O -0.97 -20.98 15.30 -57.17 -0.87 -21.85 16 17 N -1.01 -13.96 3.33 -113.57 -0.38 -14.34 16 18 C 0.11 1.41 6.58 -3.88 -0.03 1.38 16 19 C 0.11 1.28 6.49 -3.56 -0.02 1.26 16 20 N -0.61 -7.02 2.94 -172.00 -0.51 -7.52 16 21 C 0.65 8.79 8.29 53.79 0.45 9.24 16 22 O -0.53 -9.06 16.25 -19.37 -0.31 -9.37 16 23 O -0.35 -3.94 10.55 -39.70 -0.42 -4.36 16 24 C 0.06 0.39 7.16 36.70 0.26 0.66 16 25 C -0.17 -0.96 5.54 -27.59 -0.15 -1.11 16 26 C 0.13 1.15 3.23 -68.41 -0.22 0.93 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 C 0.11 1.19 5.87 -3.60 -0.02 1.17 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.62 7.79 -51.93 -0.40 0.22 16 35 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 36 H 0.11 1.61 6.93 -51.93 -0.36 1.25 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.11 1.38 6.73 -51.93 -0.35 1.04 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.51 7.75 -51.93 -0.40 0.11 16 43 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 45 H 0.11 1.03 6.93 -51.93 -0.36 0.67 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -34.17 364.75 -9.27 -43.43 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.56 Total: -1.04 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 0.60 Total: 6.80 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.62 Total: -65.12 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -2.51 Total: -55.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 50.38 SS G_CDS: -0.66 Total: 49.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.17 -9.27 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496674027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.175 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds