Wall clock time and date at job start Wed Apr 1 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 N 1.65597 * 107.21687 * 89.99960 * 14 12 2 18 18 C 1.46990 * 120.68156 * 269.72378 * 17 14 12 19 19 C 1.52798 * 108.85330 * 235.41198 * 18 17 14 20 20 N 1.47566 * 108.67491 * 310.18061 * 19 18 17 21 21 C 1.34190 * 118.33760 * 234.82350 * 20 19 18 22 22 O 1.21513 * 118.93805 * 2.78273 * 21 20 19 23 23 O 1.34384 * 122.12223 * 182.76876 * 21 20 19 24 24 C 1.45645 * 115.55614 * 24.66560 * 23 21 20 25 25 C 1.52110 * 107.27962 * 305.47108 * 24 23 21 26 26 C 1.45998 * 118.42322 * 55.20619 * 20 19 18 27 27 H 1.09002 * 108.72618 * 63.68009 * 26 20 19 28 28 C 1.46949 * 120.68808 * 89.99987 * 17 14 12 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 34 34 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 35 35 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 36 36 H 1.08999 * 109.61412 * 355.18515 * 18 17 14 37 37 H 1.08997 * 109.61206 * 115.72009 * 18 17 14 38 38 H 1.08998 * 109.69967 * 190.35850 * 19 18 17 39 39 H 1.09000 * 109.61682 * 69.95642 * 19 18 17 40 40 H 1.08998 * 109.75597 * 65.40511 * 24 23 21 41 41 H 1.09002 * 109.75706 * 186.15646 * 24 23 21 42 42 H 1.08996 * 109.69848 * 298.33675 * 25 24 23 43 43 H 1.08994 * 108.42657 * 179.24183 * 25 24 23 44 44 H 1.09000 * 109.60252 * 245.10496 * 28 17 14 45 45 H 1.09006 * 109.59574 * 5.57487 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 7 1.9608 0.8090 3.3998 18 6 1.4413 2.1688 3.1957 19 6 1.7987 3.0217 4.4121 20 7 1.3994 2.2947 5.6326 21 6 0.5872 2.9118 6.5045 22 8 0.1700 4.0210 6.2358 23 8 0.2201 2.3425 7.6651 24 6 1.1323 1.3339 8.1865 25 6 1.3377 0.3002 7.0897 26 6 1.9138 0.9437 5.8364 27 1 2.9982 0.9933 5.9354 28 6 1.5704 0.0812 4.6153 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1613 -3.4844 33 1 2.4157 -2.7377 0.9718 34 1 1.6238 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9846 36 1 1.8910 2.6020 2.3022 37 1 0.3578 2.1334 3.0828 38 1 1.2683 3.9726 4.3627 39 1 2.8734 3.2027 4.4291 40 1 2.0818 1.7983 8.4527 41 1 0.6943 0.8597 9.0648 42 1 0.3858 -0.1721 6.8471 43 1 2.0297 -0.4580 7.4560 44 1 0.4984 -0.1147 4.5958 45 1 2.1158 -0.8611 4.6682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496674027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:15 Heat of formation + Delta-G solvation = -156.131349 kcal Electronic energy + Delta-G solvation = -30940.446583 eV Core-core repulsion = 26698.607202 eV Total energy + Delta-G solvation = -4241.839381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.27350 -39.13385 -38.51912 -38.36529 -37.88995 -36.91231 -35.29601 -34.52675 -33.93831 -30.98821 -30.85764 -28.20260 -27.29039 -26.98212 -25.89738 -24.00294 -23.25882 -22.47310 -20.64355 -20.18138 -19.33937 -18.61037 -18.40162 -18.27041 -17.93168 -17.32821 -17.17505 -16.74494 -16.25819 -15.87341 -15.75248 -15.42467 -15.20356 -15.16886 -14.86311 -14.58481 -14.50123 -13.83619 -13.64951 -13.61624 -13.45759 -13.38157 -13.17797 -13.05675 -13.00199 -12.78741 -12.75274 -12.59455 -12.56372 -12.31393 -12.24849 -12.19069 -12.11568 -11.87914 -11.60502 -11.33245 -11.15325 -10.72286 -10.50394 -9.76493 -9.61062 -8.11758 -6.25252 -0.44048 1.36492 1.41946 1.44462 1.51444 1.53443 1.96729 2.41360 2.48033 2.52096 3.16725 3.22348 3.43070 3.53010 3.70005 3.87201 4.01272 4.06054 4.14460 4.18208 4.21515 4.26470 4.49524 4.60253 4.66546 4.67882 4.74010 4.76053 4.82973 4.89235 4.98566 5.03137 5.04077 5.11564 5.14406 5.18788 5.39666 5.41384 5.61770 5.76927 5.88052 6.13286 6.30364 6.59419 6.82281 6.89829 7.43927 8.92057 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.003304 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.783673 B = 8472.140422 C = 8961.075770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.998 5.998 13 C 0.103 3.897 14 S 2.791 3.209 15 O -0.997 6.997 16 O -1.009 7.009 17 N -1.003 6.003 18 C 0.108 3.892 19 C 0.111 3.889 20 N -0.606 5.606 21 C 0.655 3.345 22 O -0.580 6.580 23 O -0.360 6.360 24 C 0.057 3.943 25 C -0.163 4.163 26 C 0.121 3.879 27 H 0.095 0.905 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.098 0.902 43 H 0.142 0.858 44 H 0.088 0.912 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 -4.354 21.478 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.839 5.839 13 C -0.042 4.042 14 S 2.802 3.198 15 O -0.980 6.980 16 O -0.993 6.993 17 N -0.843 5.843 18 C -0.018 4.018 19 C -0.013 4.013 20 N -0.352 5.352 21 C 0.410 3.590 22 O -0.468 6.468 23 O -0.272 6.272 24 C -0.016 4.016 25 C -0.200 4.200 26 C 0.017 3.983 27 H 0.113 0.887 28 C -0.021 4.021 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.169 0.831 42 H 0.117 0.883 43 H 0.160 0.840 44 H 0.107 0.893 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.074 -3.663 21.404 21.715 hybrid contribution 0.027 -0.208 -1.464 1.479 sum 0.101 -3.871 19.940 20.312 Atomic orbital electron populations 1.21898 0.96969 1.00117 1.00347 1.18382 0.92101 0.91370 0.81204 0.95588 1.21644 1.31659 1.13011 0.91501 0.92617 1.25615 0.95240 0.95683 1.01605 1.69970 1.37270 1.23582 1.24326 0.85629 0.78801 0.78441 0.79197 1.19559 1.21032 1.19922 1.57671 1.70023 1.21109 1.35121 1.21349 1.01595 0.80242 1.01030 1.01474 0.73711 0.72388 0.72196 1.93507 1.69468 1.60520 1.74548 1.93544 1.75179 1.57260 1.73363 1.58122 1.67294 1.24537 1.34372 1.21693 1.00539 0.80945 0.98646 1.22010 1.01609 0.95939 0.81716 1.47539 1.49173 1.16674 1.21782 1.18055 0.77717 0.83066 0.80158 1.90939 1.59150 1.19413 1.77344 1.86885 1.49626 1.55875 1.34834 1.23683 0.93775 0.86480 0.97672 1.22186 1.05604 0.99874 0.92379 1.21532 1.00185 0.80440 0.96170 0.88688 1.22160 1.02727 0.95330 0.81850 0.91643 0.94780 0.93928 0.92667 0.94054 0.89775 0.90643 0.88719 0.90230 0.87508 0.89559 0.89455 0.83141 0.88319 0.84048 0.89332 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.95 71.98 0.64 -5.17 16 2 C 0.27 12.98 2.62 44.24 0.12 13.09 16 3 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 4 C -0.54 -28.56 8.37 25.60 0.21 -28.35 16 5 H 0.06 2.94 7.65 -2.91 -0.02 2.92 16 6 C 0.02 1.00 5.30 84.65 0.45 1.44 16 7 N -0.91 -50.53 11.32 21.45 0.24 -50.29 16 8 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -1.00 -38.48 3.12 -520.43 -1.62 -40.10 16 13 C 0.10 3.25 9.53 127.77 1.22 4.47 16 14 S 2.79 99.58 6.10 -56.49 -0.34 99.23 16 15 O -1.00 -35.44 15.81 -128.00 -2.02 -37.46 16 16 O -1.01 -44.83 15.30 -128.00 -1.96 -46.79 16 17 N -1.00 -26.30 3.33 -513.22 -1.71 -28.01 16 18 C 0.11 2.85 6.58 86.22 0.57 3.42 16 19 C 0.11 2.62 6.49 86.11 0.56 3.17 16 20 N -0.61 -12.97 2.94 -929.26 -2.73 -15.70 16 21 C 0.66 16.99 8.29 129.88 1.08 18.06 16 22 O -0.58 -20.00 16.25 19.88 0.32 -19.68 16 23 O -0.36 -7.50 10.55 -52.88 -0.56 -8.06 16 24 C 0.06 0.48 7.16 71.69 0.51 1.00 16 25 C -0.16 -1.13 5.54 30.04 0.17 -0.97 16 26 C 0.12 1.81 3.23 44.95 0.14 1.95 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 C 0.10 1.87 5.87 86.42 0.51 2.38 16 29 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.73 6.66 -2.38 -0.02 1.71 16 32 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.98 7.79 -2.39 -0.02 1.96 16 35 H 0.07 2.32 6.43 -2.38 -0.02 2.30 16 36 H 0.09 2.85 6.93 -2.39 -0.02 2.83 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.11 2.70 6.73 -2.39 -0.02 2.68 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.15 0.33 8.14 -2.39 -0.02 0.32 16 42 H 0.10 0.63 7.75 -2.39 -0.02 0.61 16 43 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.09 1.37 7.93 -2.39 -0.02 1.35 16 45 H 0.12 1.85 6.93 -2.38 -0.02 1.83 16 Total: -1.00 -76.05 364.75 -1.18 -77.23 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.01 Total: 10.37 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.18 Total: 14.51 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -5.82 Total: -134.10 kcal Atomic # 8 Polarization: -107.78 SS G_CDS: -4.22 Total: -112.00 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 99.58 SS G_CDS: -0.34 Total: 99.23 kcal Total: -76.05 -1.18 -77.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496674027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.905 kcal (2) G-P(sol) polarization free energy of solvation -76.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds