Wall clock time and date at job start Wed Apr 1 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47284 * 2 1 4 4 C 1.50697 * 109.47061 * 120.00511 * 2 1 3 5 5 H 1.08007 * 120.00137 * 120.00098 * 4 2 1 6 6 C 1.37879 * 119.99861 * 299.99602 * 4 2 1 7 7 N 1.31514 * 120.00096 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00068 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47006 * 89.99735 * 8 6 4 10 10 H 1.48492 * 109.47294 * 209.99857 * 8 6 4 11 11 H 1.48508 * 109.47126 * 330.00287 * 8 6 4 12 12 N 1.46503 * 109.47301 * 240.00123 * 2 1 3 13 13 C 1.46506 * 119.99945 * 300.00499 * 12 2 1 14 14 S 1.65598 * 120.00010 * 119.99920 * 12 2 1 15 15 O 1.42108 * 106.40165 * 156.46503 * 14 12 2 16 16 O 1.42092 * 106.40282 * 23.54333 * 14 12 2 17 17 N 1.65606 * 107.21905 * 270.00354 * 14 12 2 18 18 C 1.46982 * 120.68820 * 269.97756 * 17 14 12 19 19 C 1.53275 * 108.60775 * 235.48047 * 18 17 14 20 20 N 1.47559 * 108.61870 * 309.96557 * 19 18 17 21 21 C 1.34200 * 118.33972 * 234.92518 * 20 19 18 22 22 O 1.21504 * 118.93576 * 2.80560 * 21 20 19 23 23 O 1.34385 * 122.11971 * 182.78727 * 21 20 19 24 24 C 1.45648 * 115.56085 * 24.65491 * 23 21 20 25 25 C 1.52958 * 107.98423 * 305.78223 * 24 23 21 26 26 C 1.45993 * 118.42527 * 55.31476 * 20 19 18 27 27 H 1.08996 * 108.72348 * 63.68017 * 26 20 19 28 28 C 1.46950 * 120.68880 * 89.99815 * 17 14 12 29 29 H 1.08993 * 109.46880 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.46978 * 60.00165 * 1 2 3 31 31 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99869 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46445 * 269.99292 * 13 12 2 34 34 H 1.08995 * 109.46879 * 29.99673 * 13 12 2 35 35 H 1.09004 * 109.46779 * 149.99791 * 13 12 2 36 36 H 1.09009 * 109.61585 * 355.21331 * 18 17 14 37 37 H 1.08995 * 109.62006 * 115.56259 * 18 17 14 38 38 H 1.08997 * 109.61257 * 69.70171 * 19 18 17 39 39 H 1.09000 * 109.61588 * 190.04702 * 19 18 17 40 40 H 1.08996 * 109.75959 * 65.40128 * 24 23 21 41 41 H 1.09000 * 109.76009 * 186.16046 * 24 23 21 42 42 H 1.09005 * 109.28033 * 297.70621 * 25 24 23 43 43 H 1.09001 * 109.30680 * 178.33785 * 25 24 23 44 44 H 1.09006 * 109.60064 * 5.54288 * 28 17 14 45 45 H 1.08996 * 109.60495 * 245.06391 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9759 1.9949 3.9068 11 1 0.8471 2.1764 1.4920 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9704 0.1142 -2.2862 15 8 3.7118 -0.8789 -2.9815 16 8 3.5794 1.1829 -1.5748 17 7 1.9607 0.8092 -3.3998 18 6 1.5707 0.0815 -4.6158 19 6 1.9334 0.9367 -5.8350 20 7 1.4006 2.2976 -5.6313 21 6 0.5958 2.8142 -6.5727 22 8 0.2940 2.1282 -7.5291 23 8 0.1127 4.0656 -6.4915 24 6 0.9007 4.9927 -5.6910 25 6 1.0960 4.3730 -4.3063 26 6 1.7815 3.0189 -4.4205 27 1 2.8583 3.1871 -4.4375 28 6 1.4365 2.1663 -3.1929 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9034 -0.5280 4.4374 33 1 2.4157 -2.7376 -0.9718 34 1 0.6904 -2.3001 -0.9848 35 1 1.6238 -2.2851 -2.5004 36 1 2.1056 -0.8671 -4.6621 37 1 0.4968 -0.1044 -4.6025 38 1 3.0172 0.9803 -5.9419 39 1 1.4947 0.4997 -6.7321 40 1 1.8701 5.1546 -6.1623 41 1 0.3720 5.9414 -5.5989 42 1 0.1245 4.2460 -3.8285 43 1 1.7094 5.0373 -3.6975 44 1 1.8927 2.6030 -2.3044 45 1 0.3544 2.1254 -3.0685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496674029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:20 Heat of formation + Delta-G solvation = -121.555381 kcal Electronic energy + Delta-G solvation = -31109.306551 eV Core-core repulsion = 26868.966496 eV Total energy + Delta-G solvation = -4240.340055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44638 -38.26057 -37.58073 -37.02579 -36.51206 -35.49154 -34.42293 -33.14426 -32.58018 -30.22246 -30.10415 -27.33368 -25.91215 -25.20034 -25.07942 -23.21952 -22.37942 -20.94408 -19.95013 -19.15456 -18.10274 -17.47681 -17.34660 -17.11938 -16.55950 -16.31760 -16.20239 -15.51932 -15.13373 -15.02324 -14.67223 -14.61989 -14.37651 -13.86059 -13.72087 -13.44822 -12.99046 -12.79718 -12.67125 -12.58741 -12.39419 -12.26117 -12.08247 -12.04722 -11.98353 -11.67996 -11.62926 -11.41434 -11.33132 -11.22759 -11.14974 -10.91166 -10.57150 -10.49381 -10.24691 -9.83377 -9.65282 -9.49327 -8.83800 -8.69897 -8.21307 -6.19601 -4.20732 0.82987 2.18010 2.39024 3.10872 3.14999 3.15537 3.24002 3.29228 3.74193 3.99197 4.11587 4.26720 4.39526 4.46067 4.54544 4.68649 4.76327 4.86914 4.95816 4.99497 5.08822 5.12176 5.18113 5.35806 5.39241 5.41555 5.53597 5.60288 5.77877 5.84915 5.92706 6.06748 6.14074 6.17433 6.21926 6.35112 6.37402 6.50711 6.71066 7.18304 7.27738 7.38497 7.54044 7.78702 8.39343 8.84700 9.39582 10.93420 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.003927 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.577899 B = 7127.868550 C = 8039.980210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.240 3.760 3 H 0.055 0.945 4 C -0.524 4.524 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.983 5.983 13 C 0.109 3.891 14 S 2.777 3.223 15 O -0.983 6.983 16 O -0.969 6.969 17 N -1.013 6.013 18 C 0.106 3.894 19 C 0.108 3.892 20 N -0.611 5.611 21 C 0.655 3.345 22 O -0.534 6.534 23 O -0.343 6.343 24 C 0.064 3.936 25 C -0.169 4.169 26 C 0.126 3.874 27 H 0.087 0.913 28 C 0.112 3.888 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.266 0.734 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 9.317 -16.557 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.563 4.563 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.190 1.190 12 N -0.824 5.824 13 C -0.037 4.037 14 S 2.788 3.212 15 O -0.967 6.967 16 O -0.953 6.953 17 N -0.850 5.850 18 C -0.021 4.021 19 C -0.015 4.015 20 N -0.357 5.357 21 C 0.409 3.591 22 O -0.419 6.419 23 O -0.255 6.255 24 C -0.011 4.011 25 C -0.207 4.207 26 C 0.021 3.979 27 H 0.105 0.895 28 C -0.015 4.015 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.738 9.162 -16.931 19.444 hybrid contribution -0.937 0.779 0.642 1.377 sum -3.675 9.941 -16.289 19.433 Atomic orbital electron populations 1.22496 0.99112 1.01560 0.98958 1.19082 0.90344 0.93488 0.83517 0.92728 1.21142 1.32652 1.14362 0.88146 0.89989 1.24912 0.95713 0.96556 0.95695 1.69868 1.45018 1.40110 0.97993 0.86946 0.80518 0.83787 0.77493 1.20392 1.22038 1.19027 1.57494 1.70029 1.20117 1.34781 1.21205 1.02101 0.81517 0.98885 1.02133 0.73655 0.73167 0.72280 1.93555 1.68582 1.60114 1.74407 1.93587 1.73652 1.55966 1.72073 1.58523 1.67708 1.24027 1.34737 1.21791 1.01697 0.95372 0.83229 1.22144 0.99490 0.80238 0.99605 1.47475 1.49977 1.17969 1.20325 1.17983 0.77602 0.81361 0.82172 1.90967 1.60997 1.57536 1.32375 1.86915 1.50265 1.19417 1.68936 1.23339 0.96454 0.91894 0.89385 1.22302 1.03956 0.95876 0.98603 1.21227 1.00514 0.91257 0.84918 0.89500 1.21841 1.00438 0.81628 0.97602 0.93217 0.94986 0.92096 0.92374 0.92627 0.90833 0.93093 0.87470 0.90669 0.90335 0.86954 0.90481 0.86285 0.89032 0.87244 0.87186 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.65 37.16 0.32 -2.78 16 2 C 0.24 5.22 2.21 -69.08 -0.15 5.07 16 3 H 0.06 1.24 5.97 -51.93 -0.31 0.93 16 4 C -0.52 -13.90 8.95 -34.44 -0.31 -14.21 16 5 H 0.08 2.38 7.89 -52.48 -0.41 1.97 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 8 Si 0.88 20.48 24.37 -169.99 -4.14 16.33 16 9 H -0.28 -6.16 6.87 56.52 0.39 -5.77 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -5.75 6.53 56.52 0.37 -5.38 16 12 N -0.98 -18.36 3.12 -115.85 -0.36 -18.72 16 13 C 0.11 1.78 9.53 59.85 0.57 2.35 16 14 S 2.78 48.01 6.09 -107.50 -0.66 47.35 16 15 O -0.98 -18.17 15.82 -57.17 -0.90 -19.07 16 16 O -0.97 -19.60 15.30 -57.17 -0.87 -20.48 16 17 N -1.01 -12.91 3.33 -113.29 -0.38 -13.29 16 18 C 0.11 1.12 6.61 -3.64 -0.02 1.10 16 19 C 0.11 1.11 6.50 -3.32 -0.02 1.09 16 20 N -0.61 -6.53 2.94 -171.72 -0.50 -7.04 16 21 C 0.65 8.34 8.30 53.80 0.45 8.78 16 22 O -0.53 -8.54 16.26 -19.36 -0.31 -8.86 16 23 O -0.34 -3.82 10.57 -39.71 -0.42 -4.24 16 24 C 0.06 0.40 7.16 37.14 0.27 0.66 16 25 C -0.17 -1.04 5.65 -27.16 -0.15 -1.19 16 26 C 0.13 1.14 3.18 -68.41 -0.22 0.92 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 C 0.11 1.22 5.85 -3.59 -0.02 1.20 16 29 H 0.05 1.01 3.27 -51.93 -0.17 0.84 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.12 6.66 -51.93 -0.35 0.77 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 35 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 36 H 0.11 1.10 6.94 -51.92 -0.36 0.74 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.16 6.74 -51.93 -0.35 0.81 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.56 7.77 -51.93 -0.40 0.16 16 43 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.11 1.26 6.93 -51.93 -0.36 0.90 16 45 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -35.42 358.10 -8.20 -43.62 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.43 Total: -0.52 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 0.61 Total: 4.94 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.47 Total: -64.47 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.51 Total: -52.65 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.14 Total: 16.33 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -0.66 Total: 47.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.42 -8.20 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496674029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.935 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds