Wall clock time and date at job start Wed Apr 1 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47284 * 2 1 4 4 C 1.50697 * 109.47061 * 120.00511 * 2 1 3 5 5 H 1.08007 * 120.00137 * 120.00098 * 4 2 1 6 6 C 1.37879 * 119.99861 * 299.99602 * 4 2 1 7 7 N 1.31514 * 120.00096 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00068 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47006 * 89.99735 * 8 6 4 10 10 H 1.48492 * 109.47294 * 209.99857 * 8 6 4 11 11 H 1.48508 * 109.47126 * 330.00287 * 8 6 4 12 12 N 1.46503 * 109.47301 * 240.00123 * 2 1 3 13 13 C 1.46506 * 119.99945 * 300.00499 * 12 2 1 14 14 S 1.65598 * 120.00010 * 119.99920 * 12 2 1 15 15 O 1.42108 * 106.40165 * 156.46503 * 14 12 2 16 16 O 1.42092 * 106.40282 * 23.54333 * 14 12 2 17 17 N 1.65606 * 107.21905 * 270.00354 * 14 12 2 18 18 C 1.46982 * 120.68820 * 269.97756 * 17 14 12 19 19 C 1.53275 * 108.60775 * 235.48047 * 18 17 14 20 20 N 1.47559 * 108.61870 * 309.96557 * 19 18 17 21 21 C 1.34200 * 118.33972 * 234.92518 * 20 19 18 22 22 O 1.21504 * 118.93576 * 2.80560 * 21 20 19 23 23 O 1.34385 * 122.11971 * 182.78727 * 21 20 19 24 24 C 1.45648 * 115.56085 * 24.65491 * 23 21 20 25 25 C 1.52958 * 107.98423 * 305.78223 * 24 23 21 26 26 C 1.45993 * 118.42527 * 55.31476 * 20 19 18 27 27 H 1.08996 * 108.72348 * 63.68017 * 26 20 19 28 28 C 1.46950 * 120.68880 * 89.99815 * 17 14 12 29 29 H 1.08993 * 109.46880 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.46978 * 60.00165 * 1 2 3 31 31 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99869 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46445 * 269.99292 * 13 12 2 34 34 H 1.08995 * 109.46879 * 29.99673 * 13 12 2 35 35 H 1.09004 * 109.46779 * 149.99791 * 13 12 2 36 36 H 1.09009 * 109.61585 * 355.21331 * 18 17 14 37 37 H 1.08995 * 109.62006 * 115.56259 * 18 17 14 38 38 H 1.08997 * 109.61257 * 69.70171 * 19 18 17 39 39 H 1.09000 * 109.61588 * 190.04702 * 19 18 17 40 40 H 1.08996 * 109.75959 * 65.40128 * 24 23 21 41 41 H 1.09000 * 109.76009 * 186.16046 * 24 23 21 42 42 H 1.09005 * 109.28033 * 297.70621 * 25 24 23 43 43 H 1.09001 * 109.30680 * 178.33785 * 25 24 23 44 44 H 1.09006 * 109.60064 * 5.54288 * 28 17 14 45 45 H 1.08996 * 109.60495 * 245.06391 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9759 1.9949 3.9068 11 1 0.8471 2.1764 1.4920 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9704 0.1142 -2.2862 15 8 3.7118 -0.8789 -2.9815 16 8 3.5794 1.1829 -1.5748 17 7 1.9607 0.8092 -3.3998 18 6 1.5707 0.0815 -4.6158 19 6 1.9334 0.9367 -5.8350 20 7 1.4006 2.2976 -5.6313 21 6 0.5958 2.8142 -6.5727 22 8 0.2940 2.1282 -7.5291 23 8 0.1127 4.0656 -6.4915 24 6 0.9007 4.9927 -5.6910 25 6 1.0960 4.3730 -4.3063 26 6 1.7815 3.0189 -4.4205 27 1 2.8583 3.1871 -4.4375 28 6 1.4365 2.1663 -3.1929 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9034 -0.5280 4.4374 33 1 2.4157 -2.7376 -0.9718 34 1 0.6904 -2.3001 -0.9848 35 1 1.6238 -2.2851 -2.5004 36 1 2.1056 -0.8671 -4.6621 37 1 0.4968 -0.1044 -4.6025 38 1 3.0172 0.9803 -5.9419 39 1 1.4947 0.4997 -6.7321 40 1 1.8701 5.1546 -6.1623 41 1 0.3720 5.9414 -5.5989 42 1 0.1245 4.2460 -3.8285 43 1 1.7094 5.0373 -3.6975 44 1 1.8927 2.6030 -2.3044 45 1 0.3544 2.1254 -3.0685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496674029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:19 Heat of formation + Delta-G solvation = -149.994132 kcal Electronic energy + Delta-G solvation = -31110.539747 eV Core-core repulsion = 26868.966496 eV Total energy + Delta-G solvation = -4241.573251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.24962 -39.13053 -38.55062 -38.38546 -38.07608 -36.95338 -35.30825 -34.52975 -33.92128 -31.79626 -30.88574 -28.19322 -27.35558 -26.94829 -25.91820 -24.01017 -23.27188 -22.57466 -20.63657 -20.19624 -19.34260 -18.99903 -18.44056 -18.22433 -18.01357 -17.41194 -17.25480 -16.82267 -16.27095 -15.87538 -15.76355 -15.51918 -15.27794 -15.17168 -15.00521 -14.57275 -14.48481 -14.15970 -13.88167 -13.71910 -13.65691 -13.47900 -13.46163 -13.16927 -13.06260 -12.94003 -12.78407 -12.77083 -12.58468 -12.26056 -12.25346 -12.08482 -11.98470 -11.60477 -11.44269 -11.34021 -11.31967 -10.78306 -10.70262 -9.82774 -9.65504 -8.28523 -6.34478 -0.51273 1.32584 1.37097 1.40060 1.49376 1.51416 1.91701 2.33471 2.43725 2.46440 3.06293 3.17236 3.41318 3.48522 3.69437 3.84587 3.96411 4.02163 4.10978 4.17962 4.22619 4.24390 4.44219 4.48379 4.61796 4.63023 4.66329 4.69486 4.72712 4.74535 4.78354 4.88448 4.91753 5.01571 5.10040 5.11968 5.20316 5.35702 5.42075 5.54413 5.60853 5.86218 6.34470 6.58042 6.70510 6.89484 7.30446 8.88382 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.003927 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.577899 B = 7127.868550 C = 8039.980210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.243 3.757 3 H 0.051 0.949 4 C -0.528 4.528 5 H 0.036 0.964 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.942 3.058 9 H -0.257 1.257 10 H -0.301 1.301 11 H -0.237 1.237 12 N -0.993 5.993 13 C 0.104 3.896 14 S 2.792 3.208 15 O -1.000 7.000 16 O -1.002 7.002 17 N -1.002 6.002 18 C 0.105 3.895 19 C 0.107 3.893 20 N -0.606 5.606 21 C 0.655 3.345 22 O -0.577 6.577 23 O -0.359 6.359 24 C 0.058 3.942 25 C -0.165 4.165 26 C 0.123 3.877 27 H 0.093 0.907 28 C 0.104 3.896 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.266 0.734 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.137 0.863 44 H 0.107 0.893 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 11.797 -18.098 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.137 3.863 3 H 0.068 0.932 4 C -0.568 4.568 5 H 0.054 0.946 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.768 3.232 9 H -0.182 1.182 10 H -0.229 1.229 11 H -0.160 1.160 12 N -0.833 5.833 13 C -0.042 4.042 14 S 2.803 3.197 15 O -0.984 6.984 16 O -0.986 6.986 17 N -0.842 5.842 18 C -0.021 4.021 19 C -0.016 4.016 20 N -0.351 5.351 21 C 0.410 3.590 22 O -0.465 6.465 23 O -0.271 6.271 24 C -0.015 4.015 25 C -0.203 4.203 26 C 0.019 3.981 27 H 0.111 0.889 28 C -0.023 4.023 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.167 0.833 42 H 0.115 0.885 43 H 0.155 0.845 44 H 0.125 0.875 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.513 11.644 -18.475 22.299 hybrid contribution -0.272 -0.029 1.061 1.095 sum -4.784 11.615 -17.414 21.472 Atomic orbital electron populations 1.22365 0.96338 1.02388 1.00468 1.18856 0.92342 0.92600 0.82478 0.93170 1.21469 1.31560 1.13088 0.90670 0.94551 1.25844 0.97387 1.00088 0.95185 1.70044 1.47416 1.42535 0.98686 0.85972 0.79353 0.79903 0.77976 1.18234 1.22900 1.16000 1.57484 1.70136 1.21099 1.34576 1.21342 1.01593 0.80169 1.01063 1.01482 0.73600 0.72453 0.72184 1.93527 1.69446 1.60853 1.74543 1.93537 1.74830 1.56923 1.73269 1.58112 1.67241 1.24815 1.34052 1.21968 1.02592 0.95369 0.82134 1.22169 0.99901 0.80260 0.99274 1.47514 1.49162 1.18020 1.20389 1.18064 0.77299 0.81718 0.81918 1.90930 1.62657 1.58864 1.34081 1.86886 1.51077 1.19160 1.69999 1.23746 0.97047 0.91875 0.88805 1.22354 1.04456 0.94469 0.98981 1.21402 1.01356 0.92182 0.83208 0.88935 1.22108 1.01232 0.80492 0.98420 0.94003 0.90914 0.91819 0.92458 0.94994 0.90125 0.89542 0.87110 0.89244 0.89680 0.87054 0.89464 0.83339 0.88540 0.84470 0.87526 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 8.65 71.98 0.62 -4.85 16 2 C 0.24 10.25 2.21 44.24 0.10 10.35 16 3 H 0.05 2.18 5.97 -2.39 -0.01 2.17 16 4 C -0.53 -28.68 8.95 25.60 0.23 -28.45 16 5 H 0.04 2.23 7.89 -2.91 -0.02 2.21 16 6 C 0.01 0.72 5.45 84.66 0.46 1.18 16 7 N -0.95 -57.59 13.96 21.45 0.30 -57.29 16 8 Si 0.94 41.28 24.37 68.60 1.67 42.95 16 9 H -0.26 -10.37 6.87 99.48 0.68 -9.68 16 10 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.24 -9.19 6.53 99.48 0.65 -8.54 16 12 N -0.99 -36.11 3.12 -520.43 -1.62 -37.73 16 13 C 0.10 3.31 9.53 127.77 1.22 4.53 16 14 S 2.79 93.05 6.09 -56.49 -0.34 92.70 16 15 O -1.00 -36.15 15.82 -128.00 -2.02 -38.17 16 16 O -1.00 -39.73 15.30 -128.00 -1.96 -41.69 16 17 N -1.00 -22.93 3.33 -512.35 -1.70 -24.63 16 18 C 0.10 1.97 6.61 86.38 0.57 2.54 16 19 C 0.11 1.98 6.50 86.27 0.56 2.54 16 20 N -0.61 -11.44 2.94 -928.36 -2.73 -14.17 16 21 C 0.66 15.49 8.30 129.88 1.08 16.57 16 22 O -0.58 -18.03 16.26 19.91 0.32 -17.70 16 23 O -0.36 -7.12 10.57 -52.89 -0.56 -7.68 16 24 C 0.06 0.51 7.16 71.97 0.51 1.03 16 25 C -0.16 -1.34 5.65 30.32 0.17 -1.17 16 26 C 0.12 1.82 3.18 44.96 0.14 1.97 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 28 C 0.10 1.91 5.85 86.43 0.51 2.42 16 29 H 0.04 1.53 3.27 -2.39 -0.01 1.53 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 2.17 6.66 -2.39 -0.02 2.15 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 2.43 6.43 -2.39 -0.02 2.41 16 35 H 0.09 2.10 7.79 -2.39 -0.02 2.08 16 36 H 0.11 2.02 6.94 -2.38 -0.02 2.01 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 2.14 6.74 -2.39 -0.02 2.13 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.10 0.75 7.77 -2.38 -0.02 0.73 16 43 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.11 2.11 6.93 -2.38 -0.02 2.09 16 45 H 0.09 1.44 7.96 -2.39 -0.02 1.42 16 Total: -1.00 -80.28 358.10 -1.54 -81.82 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.93 Total: 12.96 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.17 Total: 8.64 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -5.76 Total: -133.82 kcal Atomic # 8 Polarization: -101.03 SS G_CDS: -4.22 Total: -105.25 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.67 Total: 42.95 kcal Atomic # 16 Polarization: 93.05 SS G_CDS: -0.34 Total: 92.70 kcal Total: -80.28 -1.54 -81.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496674029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.175 kcal (2) G-P(sol) polarization free energy of solvation -80.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds