Wall clock time and date at job start Wed Apr 1 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.50705 * 109.46875 * 119.99737 * 2 1 3 5 5 H 1.07998 * 119.99966 * 119.99543 * 4 2 1 6 6 C 1.37875 * 120.00132 * 299.99933 * 4 2 1 7 7 N 1.31509 * 119.99953 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47022 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47332 * 119.99877 * 8 6 4 11 11 H 1.48504 * 109.47164 * 239.99976 * 8 6 4 12 12 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 13 13 C 1.46499 * 120.00225 * 300.00126 * 12 2 1 14 14 S 1.65600 * 119.99691 * 120.00273 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 N 1.65599 * 107.22069 * 270.00182 * 14 12 2 18 18 C 1.46971 * 120.69203 * 89.99766 * 17 14 12 19 19 C 1.53275 * 108.58743 * 124.48736 * 18 17 14 20 20 N 1.47560 * 108.62987 * 50.05974 * 19 18 17 21 21 C 1.34208 * 118.31518 * 124.87144 * 20 19 18 22 22 O 1.21513 * 118.94608 * 357.50115 * 21 20 19 23 23 O 1.34394 * 122.10615 * 177.51568 * 21 20 19 24 24 C 1.45654 * 115.52245 * 335.16752 * 23 21 20 25 25 C 1.52951 * 107.98340 * 54.33475 * 24 23 21 26 26 C 1.45985 * 118.44683 * 304.71494 * 20 19 18 27 27 H 1.09009 * 108.72407 * 296.22094 * 26 20 19 28 28 C 1.46947 * 120.68693 * 269.72464 * 17 14 12 29 29 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 30 30 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 32 32 H 0.97006 * 119.99999 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 34 34 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 35 35 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 36 36 H 1.09000 * 109.62252 * 244.22178 * 18 17 14 37 37 H 1.08998 * 109.62235 * 4.58020 * 18 17 14 38 38 H 1.09000 * 109.61277 * 169.79780 * 19 18 17 39 39 H 1.08994 * 109.61327 * 290.31769 * 19 18 17 40 40 H 1.09002 * 109.75659 * 294.71745 * 24 23 21 41 41 H 1.09002 * 109.80107 * 173.98652 * 24 23 21 42 42 H 1.09011 * 109.26820 * 181.77038 * 25 24 23 43 43 H 1.09005 * 109.26842 * 62.30701 * 25 24 23 44 44 H 1.09002 * 109.59969 * 354.45915 * 28 17 14 45 45 H 1.08996 * 109.60252 * 114.92974 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1472 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1140 -2.2862 15 8 3.5795 1.1827 -1.5747 16 8 3.7119 -0.8791 -2.9813 17 7 1.9609 0.8089 -3.3998 18 6 1.4365 2.1663 -3.1930 19 6 1.8003 3.0215 -4.4118 20 7 1.4022 2.2951 -5.6331 21 6 0.5883 2.9120 -6.5038 22 8 0.1732 4.0222 -6.2358 23 8 0.2174 2.3411 -7.6626 24 6 1.1296 1.3333 -8.1858 25 6 1.3569 0.2886 -7.0920 26 6 1.9150 0.9436 -5.8366 27 1 2.9995 0.9920 -5.9357 28 6 1.5754 0.0835 -4.6181 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.7087 1.1614 3.4844 33 1 2.4157 -2.7378 -0.9715 34 1 1.6238 -2.2853 -2.5001 35 1 0.6904 -2.3003 -0.9845 36 1 0.3527 2.1273 -3.0835 37 1 1.8797 2.5970 -2.2951 38 1 1.2701 3.9726 -4.3628 39 1 2.8755 3.1994 -4.4262 40 1 2.0782 1.7985 -8.4538 41 1 0.6911 0.8585 -9.0636 42 1 2.0627 -0.4605 -7.4512 43 1 0.4095 -0.1954 -6.8544 44 1 2.1233 -0.8573 -4.6724 45 1 0.5038 -0.1154 -4.6018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496674030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:23 Heat of formation + Delta-G solvation = -156.257425 kcal Electronic energy + Delta-G solvation = -30937.907404 eV Core-core repulsion = 26696.062556 eV Total energy + Delta-G solvation = -4241.844848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25605 -39.13851 -38.50949 -38.35710 -37.89155 -36.91287 -35.29407 -34.52864 -33.94120 -30.96862 -30.83656 -28.19969 -27.29235 -26.98425 -25.90323 -24.00115 -23.27807 -22.47699 -20.63330 -20.18503 -19.34237 -18.61260 -18.40463 -18.26894 -17.93170 -17.32811 -17.18868 -16.74631 -16.25544 -15.86243 -15.74812 -15.41633 -15.19422 -15.16596 -14.86816 -14.58400 -14.49795 -13.83933 -13.64993 -13.61922 -13.46344 -13.38215 -13.18278 -13.05913 -12.99744 -12.80899 -12.76593 -12.60033 -12.56759 -12.30500 -12.24251 -12.19400 -12.09983 -11.88442 -11.59418 -11.33075 -11.14833 -10.72416 -10.51079 -9.76480 -9.61059 -8.11993 -6.25383 -0.44125 1.36391 1.41065 1.44378 1.50689 1.54283 1.96587 2.41274 2.47135 2.51920 3.16603 3.22234 3.43142 3.52413 3.70063 3.86071 4.00598 4.05720 4.14313 4.17808 4.22103 4.25707 4.49858 4.60203 4.66630 4.67807 4.73945 4.76094 4.82838 4.88959 4.98332 5.02892 5.03980 5.11411 5.14282 5.18671 5.39484 5.41275 5.61854 5.76915 5.87977 6.13159 6.30300 6.58957 6.82422 6.89283 7.43860 8.92010 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.003305 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.787126 B = 8470.250051 C = 8961.030918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.026 0.974 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.998 5.998 13 C 0.103 3.897 14 S 2.791 3.209 15 O -1.009 7.009 16 O -0.997 6.997 17 N -1.003 6.003 18 C 0.108 3.892 19 C 0.111 3.889 20 N -0.606 5.606 21 C 0.655 3.345 22 O -0.580 6.580 23 O -0.359 6.359 24 C 0.055 3.945 25 C -0.160 4.160 26 C 0.119 3.881 27 H 0.094 0.906 28 C 0.105 3.895 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.264 0.736 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.120 0.880 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -4.356 -21.496 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.839 5.839 13 C -0.042 4.042 14 S 2.802 3.198 15 O -0.993 6.993 16 O -0.980 6.980 17 N -0.843 5.843 18 C -0.018 4.018 19 C -0.012 4.012 20 N -0.351 5.351 21 C 0.409 3.591 22 O -0.468 6.468 23 O -0.271 6.271 24 C -0.018 4.018 25 C -0.198 4.198 26 C 0.015 3.985 27 H 0.112 0.888 28 C -0.021 4.021 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.116 0.884 44 H 0.138 0.862 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.094 -3.672 -21.423 21.736 hybrid contribution 0.021 -0.194 1.477 1.490 sum 0.114 -3.866 -19.946 20.318 Atomic orbital electron populations 1.21897 0.96963 1.00128 1.00347 1.18389 0.92112 0.91374 0.81223 0.95582 1.21672 1.31567 1.12982 0.91485 0.92610 1.25614 0.95233 0.95708 1.01615 1.69974 1.37255 1.23664 1.24266 0.85580 0.78256 0.78629 0.79598 1.19399 1.21049 1.20115 1.57667 1.70026 1.21102 1.35122 1.21346 1.01591 0.80240 1.01025 1.01476 0.73711 0.72391 0.72194 1.93545 1.75166 1.57263 1.73365 1.93506 1.69469 1.60516 1.74550 1.58120 1.67263 1.24794 1.34148 1.21790 1.00470 0.80969 0.98615 1.22094 1.01587 0.95913 0.81623 1.47516 1.49131 1.16626 1.21814 1.18071 0.77709 0.83100 0.80169 1.90940 1.59242 1.19327 1.77297 1.86897 1.49470 1.55696 1.34997 1.23792 0.93733 0.86649 0.97591 1.22348 1.05665 0.99541 0.92263 1.21421 1.00291 0.80528 0.96279 0.88812 1.22071 1.02788 0.95381 0.81849 0.94775 0.93917 0.91646 0.92674 0.94081 0.89774 0.90639 0.90218 0.88726 0.87502 0.89510 0.89558 0.83132 0.83895 0.88405 0.86224 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.95 71.98 0.64 -5.17 16 2 C 0.27 12.95 2.62 44.25 0.12 13.07 16 3 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 4 C -0.54 -28.50 8.37 25.60 0.21 -28.28 16 5 H 0.06 2.95 7.65 -2.91 -0.02 2.93 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -50.50 11.32 21.45 0.24 -50.26 16 8 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 N -1.00 -38.48 3.12 -520.44 -1.62 -40.10 16 13 C 0.10 3.26 9.53 127.77 1.22 4.48 16 14 S 2.79 99.55 6.10 -56.49 -0.34 99.21 16 15 O -1.01 -44.81 15.31 -128.00 -1.96 -46.77 16 16 O -1.00 -35.43 15.80 -128.00 -2.02 -37.45 16 17 N -1.00 -26.31 3.33 -513.18 -1.71 -28.02 16 18 C 0.11 2.85 6.62 86.38 0.57 3.42 16 19 C 0.11 2.63 6.50 86.27 0.56 3.19 16 20 N -0.61 -12.97 2.94 -929.13 -2.73 -15.70 16 21 C 0.65 16.98 8.30 129.88 1.08 18.06 16 22 O -0.58 -19.98 16.25 19.88 0.32 -19.66 16 23 O -0.36 -7.48 10.57 -52.98 -0.56 -8.04 16 24 C 0.06 0.47 7.15 71.97 0.51 0.99 16 25 C -0.16 -1.10 5.65 30.31 0.17 -0.93 16 26 C 0.12 1.78 3.18 44.81 0.14 1.92 16 27 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 28 C 0.10 1.87 5.83 86.28 0.50 2.37 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 1.73 6.66 -2.39 -0.02 1.71 16 31 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 32 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.98 7.79 -2.39 -0.02 1.96 16 35 H 0.07 2.32 6.43 -2.38 -0.02 2.31 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.09 2.85 6.94 -2.39 -0.02 2.83 16 38 H 0.11 2.70 6.72 -2.39 -0.02 2.68 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.14 0.06 8.14 -2.38 -0.02 0.04 16 43 H 0.10 0.61 7.76 -2.38 -0.02 0.59 16 44 H 0.12 1.85 6.93 -2.39 -0.02 1.83 16 45 H 0.09 1.37 7.94 -2.39 -0.02 1.35 16 Total: -1.00 -76.04 364.85 -1.17 -77.21 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.01 Total: 10.27 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.18 Total: 14.54 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -5.82 Total: -134.08 kcal Atomic # 8 Polarization: -107.70 SS G_CDS: -4.22 Total: -111.92 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 99.55 SS G_CDS: -0.34 Total: 99.21 kcal Total: -76.04 -1.17 -77.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496674030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.043 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds