Wall clock time and date at job start Wed Apr 1 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47006 * 2 1 4 4 C 1.50701 * 109.46879 * 119.99772 * 2 1 3 5 5 H 1.08001 * 120.00028 * 114.76120 * 4 2 1 6 6 C 1.37886 * 119.99893 * 294.76312 * 4 2 1 7 7 N 1.31507 * 120.00165 * 351.82210 * 6 4 2 8 8 Si 1.86803 * 119.99695 * 172.09491 * 6 4 2 9 9 H 1.48499 * 109.46784 * 265.01328 * 8 6 4 10 10 H 1.48503 * 109.46898 * 25.01372 * 8 6 4 11 11 H 1.48498 * 109.47028 * 145.01432 * 8 6 4 12 12 N 1.46499 * 109.46943 * 239.99636 * 2 1 3 13 13 C 1.34772 * 119.99659 * 85.00459 * 12 2 1 14 14 O 1.21358 * 120.00366 * 359.97438 * 13 12 2 15 15 C 1.49331 * 119.99553 * 180.02562 * 13 12 2 16 16 O 1.21388 * 120.00191 * 359.97438 * 15 13 12 17 17 N 1.34778 * 120.00102 * 180.02562 * 15 13 12 18 18 C 1.39817 * 120.00226 * 184.72250 * 17 15 13 19 19 C 1.38953 * 119.95236 * 144.90696 * 18 17 15 20 20 C 1.38176 * 120.12026 * 179.97438 * 19 18 17 21 21 C 1.38552 * 119.91559 * 0.02562 * 20 19 18 22 22 C 1.39459 * 120.10053 * 359.97438 * 21 20 19 23 23 C 1.38290 * 119.94430 * 359.73946 * 22 21 20 24 24 O 1.35997 * 119.45145 * 179.97438 * 22 21 20 25 25 C 1.42983 * 116.72712 * 327.15776 * 24 22 21 26 26 C 1.50753 * 109.63892 * 46.44609 * 25 24 22 27 27 O 1.21303 * 120.12779 * 148.69107 * 26 25 24 28 28 N 1.35078 * 119.74182 * 328.66827 * 26 25 24 29 29 C 1.46501 * 120.50847 * 181.65331 * 28 26 25 30 30 H 1.09001 * 109.46741 * 63.02703 * 1 2 3 31 31 H 1.08992 * 109.47291 * 183.03060 * 1 2 3 32 32 H 1.09009 * 109.47154 * 303.03571 * 1 2 3 33 33 H 0.97002 * 120.00378 * 180.27730 * 7 6 4 34 34 H 0.96997 * 119.99941 * 265.00064 * 12 2 1 35 35 H 0.97002 * 120.00118 * 4.71971 * 17 15 13 36 36 H 1.07997 * 119.93943 * 359.97438 * 19 18 17 37 37 H 1.08003 * 120.04046 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.08872 * 180.28844 * 23 22 21 39 39 H 1.09002 * 109.44520 * 286.39399 * 25 24 22 40 40 H 1.09007 * 109.41408 * 166.48131 * 25 24 22 41 41 H 1.08997 * 109.46799 * 270.01895 * 29 28 26 42 42 H 1.08999 * 109.47390 * 30.01926 * 29 28 26 43 43 H 1.08997 * 109.47127 * 150.02286 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5816 -1.6352 1.1337 6 6 1.7905 -0.1796 2.4799 7 7 1.2659 1.0209 2.5941 8 14 2.2152 -1.1628 4.0105 9 1 1.0110 -1.8954 4.4780 10 1 3.2927 -2.1337 3.6919 11 1 2.6793 -0.2409 5.0781 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8581 1.1591 -2.4117 15 6 2.6443 -0.7225 -3.5764 16 8 2.9329 -1.9004 -3.5219 17 7 2.7736 -0.0502 -4.7373 18 6 3.1441 -0.7300 -5.9015 19 6 2.6195 -0.3419 -7.1283 20 6 2.9837 -1.0110 -8.2811 21 6 3.8731 -2.0712 -8.2130 22 6 4.4013 -2.4631 -6.9832 23 6 4.0409 -1.7891 -5.8308 24 8 5.2729 -3.5058 -6.9316 25 6 5.0774 -4.5551 -7.8830 26 6 4.8586 -3.9633 -9.2522 27 8 5.2235 -4.5643 -10.2406 28 7 4.2542 -2.7614 -9.3739 29 6 4.0007 -2.1872 -10.6977 30 1 -0.3633 0.4661 -0.9159 31 1 -0.3633 -1.0261 0.0543 32 1 -0.3634 0.5603 0.8616 33 1 1.0995 1.3959 3.4731 34 1 2.2490 -1.6318 -1.1525 35 1 2.6095 0.9055 -4.7652 36 1 1.9260 0.4842 -7.1809 37 1 2.5755 -0.7080 -9.2340 38 1 4.4521 -2.0877 -4.8778 39 1 4.2056 -5.1446 -7.5990 40 1 5.9587 -5.1964 -7.9014 41 1 4.8548 -1.5814 -11.0005 42 1 3.8505 -2.9901 -11.4194 43 1 3.1082 -1.5627 -10.6579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517669387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:21 Heat of formation + Delta-G solvation = -92.702316 kcal Electronic energy + Delta-G solvation = -29499.631009 eV Core-core repulsion = 25125.098165 eV Total energy + Delta-G solvation = -4374.532843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91766 -40.72699 -39.24123 -38.43748 -37.74078 -36.33534 -35.19030 -34.13973 -32.43853 -31.09909 -29.67580 -29.60309 -29.15376 -26.60668 -25.38933 -25.02172 -23.33704 -22.86395 -20.99067 -20.09421 -19.71083 -19.45435 -18.66578 -17.66771 -17.52816 -16.79800 -16.41102 -16.07369 -15.80990 -15.62784 -15.38081 -15.17945 -15.15039 -14.65152 -14.49666 -14.29459 -13.98611 -13.76967 -13.51982 -13.31753 -12.90291 -12.86226 -12.60101 -12.51569 -12.02562 -11.94115 -11.85867 -11.28676 -11.16555 -11.10783 -11.03931 -10.84173 -10.47172 -10.41364 -10.32112 -9.83488 -9.25110 -9.16510 -8.92877 -8.63314 -8.21941 -7.94535 -6.23141 -4.29517 0.58412 0.90806 1.62488 1.95176 2.10787 2.47592 2.95911 3.21776 3.27947 3.29432 3.32164 3.55004 3.62365 4.00161 4.22111 4.30644 4.49371 4.59363 4.65242 4.72545 4.85760 4.90635 4.98115 4.99626 5.11651 5.21352 5.37740 5.39772 5.60335 5.78315 5.93213 6.04623 6.37608 6.47227 6.62797 6.71851 6.90524 6.93578 6.97584 7.13230 7.28357 7.31629 7.56007 7.64844 7.79778 7.91447 8.36633 8.55824 8.80269 9.36526 10.85357 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.002039 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.610340 B =13725.957569 C =14691.839399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.260 3.740 3 H 0.061 0.939 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.070 3.930 7 N -0.881 5.881 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.666 5.666 13 C 0.495 3.505 14 O -0.534 6.534 15 C 0.509 3.491 16 O -0.502 6.502 17 N -0.650 5.650 18 C 0.161 3.839 19 C -0.130 4.130 20 C -0.104 4.104 21 C 0.075 3.925 22 C 0.098 3.902 23 C -0.110 4.110 24 O -0.298 6.298 25 C 0.052 3.948 26 C 0.487 3.513 27 O -0.514 6.514 28 N -0.551 5.551 29 C 0.077 3.923 30 H 0.020 0.980 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.426 0.574 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.101 0.899 40 H 0.146 0.854 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -4.703 -23.657 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.159 3.841 3 H 0.079 0.921 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.211 1.211 12 N -0.315 5.315 13 C 0.274 3.726 14 O -0.412 6.412 15 C 0.292 3.708 16 O -0.375 6.375 17 N -0.297 5.297 18 C 0.066 3.934 19 C -0.151 4.151 20 C -0.125 4.125 21 C -0.020 4.020 22 C 0.051 3.949 23 C -0.131 4.131 24 O -0.212 6.212 25 C -0.026 4.026 26 C 0.276 3.724 27 O -0.389 6.389 28 N -0.277 5.277 29 C -0.064 4.064 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.265 0.735 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.119 0.881 40 H 0.164 0.836 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.737 -4.957 -23.867 24.661 hybrid contribution 0.011 -0.444 0.615 0.759 sum 3.748 -5.401 -23.252 24.164 Atomic orbital electron populations 1.22035 0.98125 0.99803 1.00178 1.19007 0.91065 0.94659 0.79377 0.92112 1.21156 1.37377 1.09137 0.90081 0.91676 1.24883 0.94757 0.94691 0.99116 1.69959 1.43059 1.14372 1.24390 0.86424 0.78725 0.79827 0.82119 1.20451 1.19679 1.21067 1.46501 1.61158 1.14572 1.09268 1.19595 0.81319 0.87282 0.84437 1.90741 1.50759 1.15145 1.84590 1.21040 0.77864 0.87083 0.84848 1.90742 1.46586 1.15665 1.84467 1.43211 1.67016 1.13192 1.06295 1.17414 0.95212 0.94752 0.86059 1.20792 1.01545 1.02488 0.90322 1.20410 0.97408 0.95483 0.99218 1.18084 1.01311 0.97573 0.84984 1.18322 0.93777 0.91402 0.91401 1.20614 0.97091 0.97470 0.97905 1.86268 1.50348 1.29270 1.55313 1.23213 1.06675 0.89430 0.83298 1.21597 0.77181 0.80824 0.92819 1.90769 1.48738 1.59830 1.39589 1.45535 1.57272 1.18562 1.06346 1.21882 1.02242 0.99940 0.82337 0.96091 0.94709 0.90376 0.92426 0.76285 0.73496 0.84211 0.84278 0.82359 0.88128 0.83617 0.91433 0.89639 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.28 37.16 0.34 -2.95 16 2 C 0.26 6.28 2.43 -69.08 -0.17 6.11 16 3 H 0.06 1.67 7.54 -51.93 -0.39 1.28 16 4 C -0.54 -13.84 8.67 -34.44 -0.30 -14.14 16 5 H 0.07 1.62 7.73 -52.49 -0.41 1.21 16 6 C 0.07 1.82 5.24 -17.82 -0.09 1.73 16 7 N -0.88 -24.09 12.10 55.43 0.67 -23.42 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.67 -13.54 5.06 -55.40 -0.28 -13.82 16 13 C 0.50 9.26 7.85 -11.64 -0.09 9.17 16 14 O -0.53 -11.05 16.14 5.49 0.09 -10.96 16 15 C 0.51 7.87 7.73 -11.64 -0.09 7.78 16 16 O -0.50 -8.37 13.91 5.46 0.08 -8.29 16 17 N -0.65 -7.85 5.32 -10.27 -0.05 -7.91 16 18 C 0.16 1.78 6.29 -83.69 -0.53 1.26 16 19 C -0.13 -1.08 9.96 -39.34 -0.39 -1.47 16 20 C -0.10 -0.80 9.35 -39.49 -0.37 -1.17 16 21 C 0.07 0.72 6.40 -83.39 -0.53 0.19 16 22 C 0.10 1.10 6.44 -39.11 -0.25 0.85 16 23 C -0.11 -1.34 8.64 -39.30 -0.34 -1.68 16 24 O -0.30 -3.28 10.45 -19.73 -0.21 -3.48 16 25 C 0.05 0.43 7.17 36.03 0.26 0.69 16 26 C 0.49 5.03 7.67 -10.82 -0.08 4.94 16 27 O -0.51 -6.52 16.77 5.54 0.09 -6.43 16 28 N -0.55 -5.09 3.12 -120.51 -0.38 -5.47 16 29 C 0.08 0.49 10.23 59.85 0.61 1.10 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.95 6.90 -51.92 -0.36 1.59 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.40 7.59 7.99 -40.82 -0.33 7.27 16 35 H 0.43 4.43 8.30 -40.82 -0.34 4.09 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.67 6.11 -52.48 -0.32 0.35 16 38 H 0.16 2.19 6.24 -52.48 -0.33 1.86 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.15 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.57 7.49 -51.93 -0.39 0.18 16 43 H 0.08 0.33 5.96 -51.93 -0.31 0.02 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -31.83 368.41 -6.32 -38.15 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.84 Total: 8.50 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -2.02 Total: 12.41 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.04 Total: -50.61 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: 0.05 Total: -29.17 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.83 -6.32 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517669387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.549 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds