Wall clock time and date at job start Wed Apr 1 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47006 * 2 1 4 4 C 1.50701 * 109.46879 * 119.99772 * 2 1 3 5 5 H 1.08001 * 120.00028 * 114.76120 * 4 2 1 6 6 C 1.37886 * 119.99893 * 294.76312 * 4 2 1 7 7 N 1.31507 * 120.00165 * 351.82210 * 6 4 2 8 8 Si 1.86803 * 119.99695 * 172.09491 * 6 4 2 9 9 H 1.48499 * 109.46784 * 265.01328 * 8 6 4 10 10 H 1.48503 * 109.46898 * 25.01372 * 8 6 4 11 11 H 1.48498 * 109.47028 * 145.01432 * 8 6 4 12 12 N 1.46499 * 109.46943 * 239.99636 * 2 1 3 13 13 C 1.34772 * 119.99659 * 85.00459 * 12 2 1 14 14 O 1.21358 * 120.00366 * 359.97438 * 13 12 2 15 15 C 1.49331 * 119.99553 * 180.02562 * 13 12 2 16 16 O 1.21388 * 120.00191 * 359.97438 * 15 13 12 17 17 N 1.34778 * 120.00102 * 180.02562 * 15 13 12 18 18 C 1.39817 * 120.00226 * 184.72250 * 17 15 13 19 19 C 1.38953 * 119.95236 * 144.90696 * 18 17 15 20 20 C 1.38176 * 120.12026 * 179.97438 * 19 18 17 21 21 C 1.38552 * 119.91559 * 0.02562 * 20 19 18 22 22 C 1.39459 * 120.10053 * 359.97438 * 21 20 19 23 23 C 1.38290 * 119.94430 * 359.73946 * 22 21 20 24 24 O 1.35997 * 119.45145 * 179.97438 * 22 21 20 25 25 C 1.42983 * 116.72712 * 327.15776 * 24 22 21 26 26 C 1.50753 * 109.63892 * 46.44609 * 25 24 22 27 27 O 1.21303 * 120.12779 * 148.69107 * 26 25 24 28 28 N 1.35078 * 119.74182 * 328.66827 * 26 25 24 29 29 C 1.46501 * 120.50847 * 181.65331 * 28 26 25 30 30 H 1.09001 * 109.46741 * 63.02703 * 1 2 3 31 31 H 1.08992 * 109.47291 * 183.03060 * 1 2 3 32 32 H 1.09009 * 109.47154 * 303.03571 * 1 2 3 33 33 H 0.97002 * 120.00378 * 180.27730 * 7 6 4 34 34 H 0.96997 * 119.99941 * 265.00064 * 12 2 1 35 35 H 0.97002 * 120.00118 * 4.71971 * 17 15 13 36 36 H 1.07997 * 119.93943 * 359.97438 * 19 18 17 37 37 H 1.08003 * 120.04046 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.08872 * 180.28844 * 23 22 21 39 39 H 1.09002 * 109.44520 * 286.39399 * 25 24 22 40 40 H 1.09007 * 109.41408 * 166.48131 * 25 24 22 41 41 H 1.08997 * 109.46799 * 270.01895 * 29 28 26 42 42 H 1.08999 * 109.47390 * 30.01926 * 29 28 26 43 43 H 1.08997 * 109.47127 * 150.02286 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5816 -1.6352 1.1337 6 6 1.7905 -0.1796 2.4799 7 7 1.2659 1.0209 2.5941 8 14 2.2152 -1.1628 4.0105 9 1 1.0110 -1.8954 4.4780 10 1 3.2927 -2.1337 3.6919 11 1 2.6793 -0.2409 5.0781 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8581 1.1591 -2.4117 15 6 2.6443 -0.7225 -3.5764 16 8 2.9329 -1.9004 -3.5219 17 7 2.7736 -0.0502 -4.7373 18 6 3.1441 -0.7300 -5.9015 19 6 2.6195 -0.3419 -7.1283 20 6 2.9837 -1.0110 -8.2811 21 6 3.8731 -2.0712 -8.2130 22 6 4.4013 -2.4631 -6.9832 23 6 4.0409 -1.7891 -5.8308 24 8 5.2729 -3.5058 -6.9316 25 6 5.0774 -4.5551 -7.8830 26 6 4.8586 -3.9633 -9.2522 27 8 5.2235 -4.5643 -10.2406 28 7 4.2542 -2.7614 -9.3739 29 6 4.0007 -2.1872 -10.6977 30 1 -0.3633 0.4661 -0.9159 31 1 -0.3633 -1.0261 0.0543 32 1 -0.3634 0.5603 0.8616 33 1 1.0995 1.3959 3.4731 34 1 2.2490 -1.6318 -1.1525 35 1 2.6095 0.9055 -4.7652 36 1 1.9260 0.4842 -7.1809 37 1 2.5755 -0.7080 -9.2340 38 1 4.4521 -2.0877 -4.8778 39 1 4.2056 -5.1446 -7.5990 40 1 5.9587 -5.1964 -7.9014 41 1 4.8548 -1.5814 -11.0005 42 1 3.8505 -2.9901 -11.4194 43 1 3.1082 -1.5627 -10.6579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517669387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:20 Heat of formation + Delta-G solvation = -116.251040 kcal Electronic energy + Delta-G solvation = -29500.652158 eV Core-core repulsion = 25125.098165 eV Total energy + Delta-G solvation = -4375.553992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.69627 -41.91887 -40.31017 -39.59581 -38.66390 -37.27555 -36.83438 -35.20408 -34.28510 -31.84171 -31.19778 -30.33423 -30.22406 -27.35626 -27.27236 -26.27292 -24.23842 -23.82777 -22.49378 -21.26491 -20.88265 -20.29763 -19.94584 -18.54426 -18.42680 -17.97832 -17.80863 -17.18090 -16.99358 -16.90302 -16.67091 -16.20405 -15.92053 -15.87402 -15.63070 -15.25786 -15.03450 -14.78485 -14.68904 -14.48067 -14.39637 -13.83388 -13.62341 -13.53378 -13.20318 -13.03541 -13.00021 -12.87570 -12.71322 -12.64728 -12.43309 -12.35772 -12.11843 -11.84835 -11.21139 -11.17799 -10.67223 -10.63938 -10.59343 -9.97670 -9.72599 -8.74117 -8.22363 -6.35540 -0.27845 0.16013 0.41548 1.09242 1.32109 1.43906 1.45726 1.47525 1.57692 2.09911 2.19966 2.40649 2.57442 2.78574 2.85284 3.10715 3.47925 3.54710 3.91343 3.97008 4.05223 4.09257 4.16335 4.35770 4.43568 4.54843 4.64478 4.71250 4.77579 4.85754 4.89974 4.98786 5.07536 5.14840 5.28610 5.31113 5.43672 5.52888 5.60098 5.71893 5.73843 5.96179 5.99735 6.19940 6.52905 6.55353 6.67682 6.78548 7.08614 7.35599 8.86534 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.002039 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.610340 B =13725.957569 C =14691.839399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.020 0.980 4 C -0.552 4.552 5 H 0.070 0.930 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.266 1.266 11 H -0.285 1.285 12 N -0.671 5.671 13 C 0.496 3.504 14 O -0.555 6.555 15 C 0.519 3.481 16 O -0.516 6.516 17 N -0.631 5.631 18 C 0.141 3.859 19 C -0.113 4.113 20 C -0.090 4.090 21 C 0.075 3.925 22 C 0.082 3.918 23 C -0.127 4.127 24 O -0.315 6.315 25 C 0.049 3.951 26 C 0.482 3.518 27 O -0.544 6.544 28 N -0.552 5.552 29 C 0.070 3.930 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.410 0.590 35 H 0.435 0.565 36 H 0.172 0.828 37 H 0.178 0.822 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.165 0.835 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 -5.004 -25.511 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.164 3.836 3 H 0.038 0.962 4 C -0.590 4.590 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.190 1.190 11 H -0.211 1.211 12 N -0.320 5.320 13 C 0.276 3.724 14 O -0.435 6.435 15 C 0.301 3.699 16 O -0.391 6.391 17 N -0.278 5.278 18 C 0.047 3.953 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.020 4.020 22 C 0.035 3.965 23 C -0.148 4.148 24 O -0.229 6.229 25 C -0.028 4.028 26 C 0.272 3.728 27 O -0.422 6.422 28 N -0.277 5.277 29 C -0.070 4.070 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.276 0.724 36 H 0.189 0.811 37 H 0.195 0.805 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.182 0.818 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.256 -5.243 -25.775 26.504 hybrid contribution 0.195 -0.306 1.042 1.103 sum 3.451 -5.549 -24.733 25.582 Atomic orbital electron populations 1.21860 0.97421 1.00134 0.99485 1.18628 0.91563 0.92735 0.80689 0.96218 1.21473 1.37358 1.09330 0.90866 0.91151 1.25709 0.94672 0.95494 1.02087 1.70079 1.44120 1.15813 1.25080 0.85398 0.78691 0.78373 0.78293 1.19756 1.19003 1.21088 1.46254 1.61861 1.14854 1.09041 1.20086 0.80282 0.86993 0.85007 1.90721 1.51380 1.16194 1.85157 1.20227 0.78352 0.86634 0.84727 1.90755 1.47623 1.16071 1.84616 1.42995 1.65715 1.13486 1.05652 1.17583 0.96209 0.95172 0.86380 1.21115 1.00730 1.02543 0.88929 1.20824 0.95841 0.93853 1.00552 1.18243 1.01334 0.97926 0.84454 1.18402 0.94389 0.91762 0.91910 1.20480 0.98285 0.98619 0.97431 1.86241 1.50675 1.29876 1.56151 1.23432 1.08373 0.88960 0.82050 1.21889 0.76780 0.81123 0.93021 1.90753 1.50135 1.60723 1.40545 1.45680 1.56569 1.18246 1.07221 1.22131 1.03919 1.00188 0.80788 0.95355 0.93543 0.92579 0.92354 0.75411 0.72443 0.81051 0.80501 0.84799 0.86561 0.81795 0.90825 0.90181 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 9.28 71.98 0.67 -5.43 16 2 C 0.27 13.16 2.43 44.25 0.11 13.27 16 3 H 0.02 1.14 7.54 -2.39 -0.02 1.12 16 4 C -0.55 -28.61 8.67 25.60 0.22 -28.39 16 5 H 0.07 3.49 7.73 -2.91 -0.02 3.47 16 6 C 0.02 1.13 5.24 84.66 0.44 1.57 16 7 N -0.91 -50.85 12.10 21.45 0.26 -50.59 16 8 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.67 -27.62 5.06 -447.55 -2.27 -29.89 16 13 C 0.50 18.70 7.85 87.23 0.68 19.38 16 14 O -0.55 -23.19 16.14 -3.27 -0.05 -23.25 16 15 C 0.52 15.90 7.73 87.23 0.67 16.58 16 16 O -0.52 -17.27 13.91 -3.37 -0.05 -17.32 16 17 N -0.63 -14.48 5.32 -304.74 -1.62 -16.10 16 18 C 0.14 2.88 6.29 38.21 0.24 3.12 16 19 C -0.11 -1.44 9.96 22.43 0.22 -1.22 16 20 C -0.09 -1.01 9.35 22.33 0.21 -0.80 16 21 C 0.07 1.26 6.40 38.15 0.24 1.50 16 22 C 0.08 1.78 6.44 22.58 0.15 1.93 16 23 C -0.13 -3.06 8.64 22.45 0.19 -2.86 16 24 O -0.31 -6.86 10.45 -93.52 -0.98 -7.84 16 25 C 0.05 0.79 7.17 71.25 0.51 1.30 16 26 C 0.48 9.44 7.67 87.63 0.67 10.11 16 27 O -0.54 -13.46 16.77 -3.10 -0.05 -13.52 16 28 N -0.55 -9.01 3.12 -653.39 -2.04 -11.05 16 29 C 0.07 0.69 10.23 127.77 1.31 2.00 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.85 6.90 -2.38 -0.02 2.84 16 33 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.41 15.59 7.99 -92.71 -0.74 14.85 16 35 H 0.44 8.35 8.30 -92.71 -0.77 7.58 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.18 0.64 6.11 -2.91 -0.02 0.63 16 38 H 0.13 3.86 6.24 -2.91 -0.02 3.84 16 39 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.16 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.92 7.49 -2.39 -0.02 0.90 16 43 H 0.11 0.37 5.96 -2.39 -0.01 0.36 16 Total: -1.00 -70.59 368.41 1.37 -69.22 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.41 Total: 24.90 kcal Atomic # 6 Polarization: 25.51 SS G_CDS: 6.55 Total: 32.05 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -5.67 Total: -107.63 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -1.13 Total: -61.92 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -70.59 1.37 -69.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517669387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.030 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds