Wall clock time and date at job start Wed Apr 1 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 5 5 C 1.34776 * 120.00056 * 85.00588 * 4 2 1 6 6 O 1.21556 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.47845 * 120.00224 * 180.02562 * 5 4 2 8 8 C 1.39590 * 120.14357 * 359.71691 * 7 5 4 9 9 C 1.37939 * 119.85176 * 179.76931 * 8 7 5 10 10 C 1.38383 * 120.14653 * 0.50795 * 9 8 7 11 11 C 1.38342 * 120.29003 * 359.74791 * 10 9 8 12 12 N 1.48014 * 119.92424 * 179.97438 * 11 10 9 13 13 O 1.21803 * 119.99212 * 180.02562 * 12 11 10 14 14 O 1.21798 * 120.00252 * 0.02562 * 12 11 10 15 15 C 1.37976 * 120.14610 * 359.97438 * 11 10 9 16 16 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 17 17 O 1.21283 * 120.00262 * 120.00231 * 16 2 1 18 18 N 1.34777 * 119.99928 * 299.72137 * 16 2 1 19 19 C 1.47067 * 136.05683 * 359.91428 * 18 16 2 20 20 C 1.53242 * 88.08123 * 207.19809 * 19 18 16 21 21 C 1.50699 * 114.32465 * 220.46716 * 20 19 18 22 22 H 1.07997 * 120.00222 * 93.76227 * 21 20 19 23 23 C 1.37875 * 119.99999 * 273.75385 * 21 20 19 24 24 N 1.31522 * 119.99948 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 120.00268 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47540 * 89.99334 * 25 23 21 27 27 H 1.48499 * 109.47398 * 209.99772 * 25 23 21 28 28 H 1.48501 * 109.47054 * 329.99540 * 25 23 21 29 29 C 1.47072 * 136.05745 * 180.27198 * 18 16 2 30 30 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 31 31 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 33 33 H 0.97003 * 120.00221 * 265.00067 * 4 2 1 34 34 H 1.08000 * 120.07639 * 0.02980 * 8 7 5 35 35 H 1.08001 * 119.92950 * 180.25818 * 9 8 7 36 36 H 1.07994 * 119.85515 * 179.75978 * 10 9 8 37 37 H 1.07996 * 120.07787 * 180.02562 * 15 11 10 38 38 H 1.09000 * 113.46426 * 321.92357 * 19 18 16 39 39 H 1.08998 * 113.47159 * 92.37047 * 19 18 16 40 40 H 1.08998 * 114.20056 * 87.72509 * 20 19 18 41 41 H 0.96999 * 120.00035 * 180.02562 * 24 23 21 42 42 H 1.08991 * 113.47060 * 267.62729 * 29 18 16 43 43 H 1.08997 * 113.46223 * 38.07259 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3570 6 8 1.8577 1.1609 -2.4118 7 6 2.6394 -0.7156 -3.5643 8 6 2.9772 -2.0686 -3.5036 9 6 3.4314 -2.7143 -4.6348 10 6 3.5624 -2.0212 -5.8253 11 6 3.2343 -0.6788 -5.8909 12 7 3.3781 0.0548 -7.1684 13 8 3.0901 1.2368 -7.2274 14 8 3.7844 -0.5234 -8.1604 15 6 2.7735 -0.0225 -4.7682 16 6 2.0322 -0.7104 1.2305 17 8 2.7295 -1.6965 1.1194 18 7 1.7112 -0.2466 2.4546 19 6 0.9272 0.8770 2.9892 20 6 1.8142 0.8346 4.2380 21 6 1.0724 1.0399 5.5336 22 1 0.7211 0.1873 6.0958 23 6 0.8423 2.3163 6.0014 24 7 0.1944 2.4955 7.1319 25 14 1.4494 3.7911 5.0290 26 1 0.3982 4.2197 4.0717 27 1 1.7551 4.9065 5.9605 28 1 2.6777 3.4196 4.2816 29 6 1.9961 -0.6376 3.8435 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6319 -1.1524 34 1 2.8793 -2.6098 -2.5741 35 1 3.6892 -3.7622 -4.5902 36 1 3.9221 -2.5304 -6.7071 37 1 2.5173 1.0254 -4.8208 38 1 1.0359 1.7954 2.4124 39 1 -0.1143 0.6240 3.1877 40 1 2.7220 1.4331 4.1618 41 1 0.0322 3.3935 7.4608 42 1 1.2422 -1.2981 4.2718 43 1 3.0118 -1.0044 3.9914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598041718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:05:55 Heat of formation + Delta-G solvation = -2.315066 kcal Electronic energy + Delta-G solvation = -29207.451629 eV Core-core repulsion = 24836.838271 eV Total energy + Delta-G solvation = -4370.613358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.59882 -40.99976 -40.03793 -38.97902 -37.63521 -36.95378 -35.27120 -33.12800 -32.75194 -32.22872 -31.10029 -29.34608 -27.03297 -25.86623 -25.44331 -25.18002 -23.46964 -23.08592 -21.23242 -20.34669 -19.97142 -19.05516 -18.70918 -17.92811 -17.68977 -17.30195 -17.21762 -16.83027 -16.29556 -15.75426 -15.47577 -15.30159 -15.13576 -14.80523 -14.39723 -14.12125 -13.71699 -13.60032 -13.12770 -13.03823 -12.99521 -12.63284 -12.50510 -12.36348 -11.96098 -11.94811 -11.86328 -11.73937 -11.60980 -11.51019 -11.04695 -10.85325 -10.53068 -10.32383 -10.10822 -10.06364 -9.98350 -9.70996 -9.47564 -9.29576 -8.78178 -8.32160 -6.30458 -4.34800 -0.71037 -0.03362 0.79162 0.90122 2.10241 2.40563 2.66691 2.93446 3.13702 3.20397 3.24186 3.26167 3.75557 3.79271 4.05098 4.06236 4.20125 4.21565 4.39138 4.53047 4.86755 4.88938 4.90807 4.98162 5.02873 5.20731 5.26141 5.40067 5.50237 5.53907 5.60894 5.76769 5.83972 5.92593 5.94524 5.96860 6.09147 6.12706 6.21459 6.33134 7.00978 7.03040 7.21716 7.42291 7.66728 8.02154 8.20641 8.28630 8.72053 9.29396 10.81141 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002038 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.129549 B =13736.208571 C =14615.711477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.116 0.884 4 N -0.701 5.701 5 C 0.562 3.438 6 O -0.523 6.523 7 C -0.126 4.126 8 C -0.035 4.035 9 C -0.120 4.120 10 C -0.033 4.033 11 C -0.052 4.052 12 N 0.028 4.972 13 O -0.151 6.151 14 O -0.157 6.157 15 C 0.002 3.998 16 C 0.532 3.468 17 O -0.561 6.561 18 N -0.635 5.635 19 C 0.080 3.920 20 C -0.012 4.012 21 C -0.513 4.513 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.889 5.889 25 Si 0.872 3.128 26 H -0.272 1.272 27 H -0.285 1.285 28 H -0.263 1.263 29 C 0.116 3.884 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.268 0.732 42 H 0.084 0.916 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -10.224 -22.502 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 H 0.133 0.867 4 N -0.355 5.355 5 C 0.348 3.652 6 O -0.400 6.400 7 C -0.130 4.130 8 C -0.053 4.053 9 C -0.138 4.138 10 C -0.053 4.053 11 C -0.135 4.135 12 N 0.549 4.451 13 O -0.369 6.369 14 O -0.373 6.373 15 C -0.018 4.018 16 C 0.320 3.680 17 O -0.441 6.441 18 N -0.368 5.368 19 C -0.042 4.042 20 C -0.032 4.032 21 C -0.551 4.551 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.526 5.526 25 Si 0.699 3.301 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.187 1.187 29 C -0.005 4.005 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.186 0.814 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.784 -10.182 -22.004 24.539 hybrid contribution 0.326 0.597 -0.745 1.009 sum 4.110 -9.584 -22.749 25.025 Atomic orbital electron populations 1.22146 0.92330 1.03201 1.04162 1.20757 0.96058 0.98132 0.82897 0.86656 1.45613 1.66630 1.14820 1.08429 1.17862 0.78202 0.86490 0.82671 1.90849 1.49530 1.14960 1.84665 1.19878 1.04790 0.94411 0.93941 1.21931 0.90657 0.93021 0.99729 1.21226 1.00227 1.01520 0.90862 1.21319 0.92717 0.90888 1.00335 1.21009 1.13420 0.93831 0.85252 1.43542 0.98031 1.01170 1.02393 1.94596 1.52381 0.98505 1.91396 1.94542 1.47148 1.70055 1.25553 1.21109 0.89710 1.02222 0.88724 1.19865 0.80826 0.84017 0.83316 1.90637 1.40128 1.27259 1.86073 1.49848 1.50734 1.31581 1.04660 1.23972 0.98022 0.87086 0.95126 1.20874 0.96202 0.92294 0.93793 1.20720 1.36184 0.94266 1.03937 0.90108 1.25006 0.94125 0.98951 0.94478 1.69884 1.39933 1.22725 1.20010 0.86904 0.80145 0.82639 0.80395 1.19797 1.21067 1.18721 1.23191 1.00640 1.00029 0.76687 0.90902 0.91785 0.89974 0.75317 0.83200 0.82524 0.82314 0.81450 0.92318 0.89043 0.91412 0.92222 0.89802 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.37 37.16 0.35 -1.48 16 2 C 0.13 1.68 2.86 -69.09 -0.20 1.48 16 3 H 0.12 1.60 7.58 -51.93 -0.39 1.21 16 4 N -0.70 -7.70 4.90 -55.89 -0.27 -7.98 16 5 C 0.56 6.37 7.74 -12.33 -0.10 6.28 16 6 O -0.52 -7.65 16.01 5.32 0.09 -7.57 16 7 C -0.13 -1.08 5.87 -104.97 -0.62 -1.70 16 8 C -0.03 -0.19 9.54 -39.19 -0.37 -0.57 16 9 C -0.12 -0.49 10.03 -39.64 -0.40 -0.88 16 10 C -0.03 -0.19 9.55 -39.49 -0.38 -0.57 16 11 C -0.05 -0.45 6.84 -80.01 -0.55 -1.00 16 12 N 0.03 0.31 4.45 33.93 0.15 0.46 16 13 O -0.15 -1.88 18.44 -29.46 -0.54 -2.42 16 14 O -0.16 -1.74 18.44 -29.46 -0.54 -2.29 16 15 C 0.00 0.02 9.10 -39.18 -0.36 -0.34 16 16 C 0.53 8.42 7.47 -10.98 -0.08 8.34 16 17 O -0.56 -9.93 16.61 5.55 0.09 -9.84 16 18 N -0.64 -10.70 3.64 -185.37 -0.68 -11.37 16 19 C 0.08 1.39 5.85 -8.63 -0.05 1.34 16 20 C -0.01 -0.24 2.99 -91.39 -0.27 -0.52 16 21 C -0.51 -12.51 9.38 -34.44 -0.32 -12.83 16 22 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 23 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 24 N -0.89 -24.70 13.96 55.43 0.77 -23.93 16 25 Si 0.87 19.19 27.42 -169.99 -4.66 14.53 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.26 -5.54 6.22 56.52 0.35 -5.18 16 29 C 0.12 2.08 8.19 -8.50 -0.07 2.01 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.96 6.37 -51.93 -0.33 0.63 16 33 H 0.41 3.82 5.83 -40.82 -0.24 3.59 16 34 H 0.15 0.56 6.41 -52.49 -0.34 0.22 16 35 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16 36 H 0.16 0.62 7.60 -52.49 -0.40 0.22 16 37 H 0.17 1.68 7.20 -52.49 -0.38 1.30 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.54 8.05 -51.93 -0.42 1.12 16 40 H 0.07 1.41 6.50 -51.93 -0.34 1.07 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -31.06 375.16 -8.42 -39.48 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.97 Total: 3.77 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.51 Total: 1.49 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.02 Total: -42.82 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.91 Total: -22.11 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.66 Total: 14.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.06 -8.42 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598041718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.169 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds