Wall clock time and date at job start Wed Apr 1 2020 07:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 5 5 C 1.34776 * 120.00056 * 85.00588 * 4 2 1 6 6 O 1.21556 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.47845 * 120.00224 * 180.02562 * 5 4 2 8 8 C 1.39590 * 120.14357 * 359.71691 * 7 5 4 9 9 C 1.37939 * 119.85176 * 179.76931 * 8 7 5 10 10 C 1.38383 * 120.14653 * 0.50795 * 9 8 7 11 11 C 1.38342 * 120.29003 * 359.74791 * 10 9 8 12 12 N 1.48014 * 119.92424 * 179.97438 * 11 10 9 13 13 O 1.21803 * 119.99212 * 180.02562 * 12 11 10 14 14 O 1.21798 * 120.00252 * 0.02562 * 12 11 10 15 15 C 1.37976 * 120.14610 * 359.97438 * 11 10 9 16 16 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 17 17 O 1.21283 * 120.00262 * 120.00231 * 16 2 1 18 18 N 1.34777 * 119.99928 * 299.72137 * 16 2 1 19 19 C 1.47067 * 136.05683 * 359.91428 * 18 16 2 20 20 C 1.53242 * 88.08123 * 207.19809 * 19 18 16 21 21 C 1.50699 * 114.32465 * 220.46716 * 20 19 18 22 22 H 1.07997 * 120.00222 * 93.76227 * 21 20 19 23 23 C 1.37875 * 119.99999 * 273.75385 * 21 20 19 24 24 N 1.31522 * 119.99948 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 120.00268 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47540 * 89.99334 * 25 23 21 27 27 H 1.48499 * 109.47398 * 209.99772 * 25 23 21 28 28 H 1.48501 * 109.47054 * 329.99540 * 25 23 21 29 29 C 1.47072 * 136.05745 * 180.27198 * 18 16 2 30 30 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 31 31 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 33 33 H 0.97003 * 120.00221 * 265.00067 * 4 2 1 34 34 H 1.08000 * 120.07639 * 0.02980 * 8 7 5 35 35 H 1.08001 * 119.92950 * 180.25818 * 9 8 7 36 36 H 1.07994 * 119.85515 * 179.75978 * 10 9 8 37 37 H 1.07996 * 120.07787 * 180.02562 * 15 11 10 38 38 H 1.09000 * 113.46426 * 321.92357 * 19 18 16 39 39 H 1.08998 * 113.47159 * 92.37047 * 19 18 16 40 40 H 1.08998 * 114.20056 * 87.72509 * 20 19 18 41 41 H 0.96999 * 120.00035 * 180.02562 * 24 23 21 42 42 H 1.08991 * 113.47060 * 267.62729 * 29 18 16 43 43 H 1.08997 * 113.46223 * 38.07259 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3570 6 8 1.8577 1.1609 -2.4118 7 6 2.6394 -0.7156 -3.5643 8 6 2.9772 -2.0686 -3.5036 9 6 3.4314 -2.7143 -4.6348 10 6 3.5624 -2.0212 -5.8253 11 6 3.2343 -0.6788 -5.8909 12 7 3.3781 0.0548 -7.1684 13 8 3.0901 1.2368 -7.2274 14 8 3.7844 -0.5234 -8.1604 15 6 2.7735 -0.0225 -4.7682 16 6 2.0322 -0.7104 1.2305 17 8 2.7295 -1.6965 1.1194 18 7 1.7112 -0.2466 2.4546 19 6 0.9272 0.8770 2.9892 20 6 1.8142 0.8346 4.2380 21 6 1.0724 1.0399 5.5336 22 1 0.7211 0.1873 6.0958 23 6 0.8423 2.3163 6.0014 24 7 0.1944 2.4955 7.1319 25 14 1.4494 3.7911 5.0290 26 1 0.3982 4.2197 4.0717 27 1 1.7551 4.9065 5.9605 28 1 2.6777 3.4196 4.2816 29 6 1.9961 -0.6376 3.8435 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6319 -1.1524 34 1 2.8793 -2.6098 -2.5741 35 1 3.6892 -3.7622 -4.5902 36 1 3.9221 -2.5304 -6.7071 37 1 2.5173 1.0254 -4.8208 38 1 1.0359 1.7954 2.4124 39 1 -0.1143 0.6240 3.1877 40 1 2.7220 1.4331 4.1618 41 1 0.0322 3.3935 7.4608 42 1 1.2422 -1.2981 4.2718 43 1 3.0118 -1.0044 3.9914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598041718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:05:54 Heat of formation + Delta-G solvation = -22.050758 kcal Electronic energy + Delta-G solvation = -29208.307433 eV Core-core repulsion = 24836.838271 eV Total energy + Delta-G solvation = -4371.469162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.37178 -41.93680 -41.18150 -39.81779 -38.94801 -37.78112 -36.30737 -34.69714 -33.80263 -32.80178 -32.14387 -30.71326 -27.75290 -27.39548 -26.81422 -26.14730 -24.47524 -23.67054 -22.18269 -21.66393 -20.89934 -19.99773 -19.78396 -19.14139 -18.71373 -18.57542 -18.07584 -17.59638 -17.42136 -16.86158 -16.46935 -16.40749 -16.05977 -15.86180 -15.34604 -15.22871 -15.07106 -14.72919 -14.35591 -14.22724 -13.87481 -13.59161 -13.48816 -13.38272 -13.24816 -13.12401 -12.82366 -12.78500 -12.72168 -12.47608 -12.39218 -12.38946 -11.82460 -11.55672 -11.45680 -11.26095 -10.96987 -10.87029 -10.67312 -10.61660 -10.40552 -9.71980 -8.27385 -6.34775 -1.38717 -0.63797 0.13182 0.21038 1.35242 1.36566 1.40810 1.45099 1.49302 1.52124 2.04045 2.29371 2.37356 3.02724 3.11016 3.19445 3.28540 3.48025 3.55881 3.72706 3.88446 3.92192 3.98445 4.01780 4.25607 4.38371 4.42417 4.48473 4.53041 4.61247 4.64294 4.70041 4.72884 4.78683 4.81894 4.88552 5.00283 5.05138 5.07059 5.29030 5.39414 5.60343 6.17510 6.28119 6.35333 6.68109 6.74028 6.80769 6.94017 7.32773 8.87687 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002038 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.129549 B =13736.208571 C =14615.711477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.108 0.892 4 N -0.694 5.694 5 C 0.564 3.436 6 O -0.563 6.563 7 C -0.139 4.139 8 C -0.020 4.020 9 C -0.099 4.099 10 C -0.021 4.021 11 C -0.067 4.067 12 N 0.030 4.970 13 O -0.208 6.208 14 O -0.143 6.143 15 C -0.010 4.010 16 C 0.535 3.465 17 O -0.576 6.576 18 N -0.635 5.635 19 C 0.093 3.907 20 C -0.024 4.024 21 C -0.507 4.507 22 H 0.046 0.954 23 C 0.023 3.977 24 N -0.942 5.942 25 Si 0.931 3.069 26 H -0.258 1.258 27 H -0.294 1.294 28 H -0.245 1.245 29 C 0.120 3.880 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.418 0.582 34 H 0.174 0.826 35 H 0.203 0.797 36 H 0.183 0.817 37 H 0.146 0.854 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.267 0.733 42 H 0.085 0.915 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -12.548 -24.636 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.126 0.874 4 N -0.348 5.348 5 C 0.352 3.648 6 O -0.443 6.443 7 C -0.143 4.143 8 C -0.039 4.039 9 C -0.117 4.117 10 C -0.040 4.040 11 C -0.150 4.150 12 N 0.546 4.454 13 O -0.413 6.413 14 O -0.366 6.366 15 C -0.030 4.030 16 C 0.325 3.675 17 O -0.457 6.457 18 N -0.368 5.368 19 C -0.029 4.029 20 C -0.043 4.043 21 C -0.545 4.545 22 H 0.064 0.936 23 C -0.176 4.176 24 N -0.581 5.581 25 Si 0.755 3.245 26 H -0.183 1.183 27 H -0.220 1.220 28 H -0.169 1.169 29 C -0.002 4.002 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.192 0.808 35 H 0.220 0.780 36 H 0.200 0.800 37 H 0.164 0.836 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.732 -12.453 -24.148 27.579 hybrid contribution 0.090 1.057 -0.059 1.063 sum 4.822 -11.396 -24.207 27.186 Atomic orbital electron populations 1.22109 0.90962 1.03950 1.04215 1.20645 0.97016 0.97423 0.82243 0.87399 1.45519 1.66429 1.15142 1.07708 1.18231 0.77284 0.86052 0.83270 1.90831 1.51340 1.16814 1.85299 1.19640 1.06647 0.95737 0.92269 1.22260 0.88784 0.91419 1.01398 1.21727 0.97796 1.03126 0.89044 1.21761 0.90964 0.89272 1.02010 1.21123 1.15316 0.94858 0.83719 1.43881 0.97368 1.01044 1.03147 1.94604 1.54984 0.99673 1.92010 1.94494 1.45985 1.69699 1.26459 1.20958 0.90775 1.01623 0.89627 1.20267 0.80077 0.83743 0.83446 1.90628 1.40726 1.28088 1.86287 1.49737 1.50924 1.31479 1.04671 1.23698 0.97608 0.88101 0.93494 1.20789 0.96352 0.94194 0.92981 1.20897 1.35377 0.93026 1.05223 0.93579 1.25790 0.94468 1.01973 0.95322 1.70028 1.42487 1.23262 1.22305 0.85959 0.80611 0.78771 0.79162 1.18262 1.21999 1.16885 1.23040 1.01056 0.98530 0.77568 0.90635 0.90698 0.90124 0.74159 0.80821 0.78018 0.79969 0.83637 0.90570 0.88543 0.91494 0.92381 0.89658 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.37 71.98 0.67 -2.50 16 2 C 0.13 3.23 2.86 44.25 0.13 3.36 16 3 H 0.11 2.82 7.58 -2.39 -0.02 2.80 16 4 N -0.69 -13.70 4.90 -449.00 -2.20 -15.90 16 5 C 0.56 12.15 7.74 86.79 0.67 12.82 16 6 O -0.56 -16.54 16.01 -3.89 -0.06 -16.60 16 7 C -0.14 -2.14 5.87 -20.09 -0.12 -2.26 16 8 C -0.02 -0.14 9.54 22.53 0.21 0.07 16 9 C -0.10 -0.28 10.03 22.23 0.22 -0.06 16 10 C -0.02 -0.16 9.55 22.33 0.21 0.05 16 11 C -0.07 -1.08 6.84 36.34 0.25 -0.83 16 12 N 0.03 0.65 4.45 -46.55 -0.21 0.44 16 13 O -0.21 -5.52 18.44 18.88 0.35 -5.17 16 14 O -0.14 -3.03 18.44 18.89 0.35 -2.69 16 15 C -0.01 -0.18 9.10 22.53 0.21 0.03 16 16 C 0.54 15.68 7.47 87.66 0.65 16.34 16 17 O -0.58 -18.90 16.61 -3.04 -0.05 -18.95 16 18 N -0.64 -20.05 3.64 -858.77 -3.13 -23.18 16 19 C 0.09 3.04 5.85 83.10 0.49 3.52 16 20 C -0.02 -0.93 2.99 -11.29 -0.03 -0.96 16 21 C -0.51 -24.99 9.38 25.60 0.24 -24.75 16 22 H 0.05 2.53 8.06 -2.91 -0.02 2.51 16 23 C 0.02 1.21 5.47 84.65 0.46 1.68 16 24 N -0.94 -53.78 13.96 21.45 0.30 -53.48 16 25 Si 0.93 39.10 27.42 68.60 1.88 40.98 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.25 -9.51 6.22 99.48 0.62 -8.89 16 29 C 0.12 4.15 8.19 83.18 0.68 4.83 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.69 6.37 -2.39 -0.02 1.68 16 33 H 0.42 6.51 5.83 -92.71 -0.54 5.97 16 34 H 0.17 0.41 6.41 -2.91 -0.02 0.39 16 35 H 0.20 -1.10 8.06 -2.91 -0.02 -1.13 16 36 H 0.18 0.57 7.60 -2.91 -0.02 0.55 16 37 H 0.15 3.24 7.20 -2.91 -0.02 3.21 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.10 3.07 8.05 -2.39 -0.02 3.05 16 40 H 0.07 2.66 6.50 -2.39 -0.02 2.65 16 41 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.62 375.16 2.63 -68.00 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.45 Total: 15.21 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.95 Total: 11.34 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -5.24 Total: -92.12 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: 0.58 Total: -43.41 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.88 Total: 40.98 kcal Total: -70.62 2.63 -68.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598041718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.947 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds