Wall clock time and date at job start Wed Apr 1 2020 07:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46992 * 2 1 4 4 N 1.46495 * 109.47196 * 120.00311 * 2 1 3 5 5 C 1.34782 * 120.00063 * 274.99700 * 4 2 1 6 6 O 1.21559 * 119.99845 * 0.02562 * 5 4 2 7 7 C 1.47847 * 120.00231 * 179.97438 * 5 4 2 8 8 C 1.39589 * 120.14025 * 359.72802 * 7 5 4 9 9 C 1.37951 * 119.84716 * 179.76803 * 8 7 5 10 10 C 1.38372 * 120.14397 * 0.50468 * 9 8 7 11 11 C 1.38337 * 120.29717 * 359.74843 * 10 9 8 12 12 N 1.48005 * 119.93119 * 179.97438 * 11 10 9 13 13 O 1.21809 * 120.00150 * 180.02562 * 12 11 10 14 14 O 1.21794 * 120.00191 * 0.02562 * 12 11 10 15 15 C 1.37986 * 120.14251 * 359.97438 * 11 10 9 16 16 C 1.50700 * 109.46986 * 239.99943 * 2 1 3 17 17 O 1.21283 * 120.00277 * 266.40443 * 16 2 1 18 18 N 1.34781 * 119.99987 * 86.40839 * 16 2 1 19 19 C 1.47065 * 136.06044 * 174.62880 * 18 16 2 20 20 C 1.53495 * 87.98835 * 207.37916 * 19 18 16 21 21 C 1.50706 * 114.20485 * 220.34785 * 20 19 18 22 22 H 1.07993 * 119.99977 * 93.59930 * 21 20 19 23 23 C 1.37877 * 119.99573 * 273.59479 * 21 20 19 24 24 N 1.31506 * 120.00395 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99793 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47136 * 89.99792 * 25 23 21 27 27 H 1.48499 * 109.47207 * 210.00108 * 25 23 21 28 28 H 1.48510 * 109.47160 * 330.00037 * 25 23 21 29 29 C 1.47065 * 136.05662 * 354.99912 * 18 16 2 30 30 H 1.08998 * 109.46640 * 303.35605 * 1 2 3 31 31 H 1.08993 * 109.47165 * 63.35408 * 1 2 3 32 32 H 1.08998 * 109.46747 * 183.35364 * 1 2 3 33 33 H 0.96994 * 120.00465 * 95.00087 * 4 2 1 34 34 H 1.07994 * 120.08002 * 0.02562 * 8 7 5 35 35 H 1.08002 * 119.92425 * 180.24744 * 9 8 7 36 36 H 1.07999 * 119.85458 * 179.76043 * 10 9 8 37 37 H 1.07996 * 120.07427 * 180.02562 * 15 11 10 38 38 H 1.08996 * 113.46647 * 322.15980 * 19 18 16 39 39 H 1.09007 * 113.46774 * 92.59394 * 19 18 16 40 40 H 1.08991 * 114.20829 * 87.51863 * 20 19 18 41 41 H 0.97003 * 120.00770 * 180.02562 * 24 23 21 42 42 H 1.08997 * 113.47031 * 267.40863 * 29 18 16 43 43 H 1.09004 * 113.46788 * 37.84439 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1610 2.4119 7 6 2.6394 -0.7154 3.5644 8 6 2.9663 -2.0713 3.5065 9 6 3.4297 -2.7146 4.6355 10 6 3.5607 -2.0213 5.8258 11 6 3.2335 -0.6788 5.8913 12 7 3.3762 0.0547 7.1688 13 8 3.0880 1.2367 7.2280 14 8 3.7818 -0.5236 8.1610 15 6 2.7743 -0.0220 4.7680 16 6 2.0323 -0.7104 -1.2305 17 8 2.2966 -1.8931 -1.1825 18 7 2.1880 -0.0314 -2.3843 19 6 2.7235 -0.3254 -3.7221 20 6 3.0558 1.1670 -3.8578 21 6 2.7759 1.7406 -5.2230 22 1 1.8276 2.2162 -5.4248 23 6 3.7307 1.6583 -6.2143 24 7 4.8854 1.0788 -5.9686 25 14 3.3841 2.3700 -7.9062 26 1 3.8225 3.7882 -7.9460 27 1 4.1265 1.5934 -8.9314 28 1 1.9277 2.2940 -8.1864 29 6 1.9031 1.3315 -2.8576 30 1 -0.3632 0.5651 0.8584 31 1 -0.3633 0.4608 -0.9185 32 1 -0.3633 -1.0259 0.0601 33 1 2.2491 -1.6317 1.1525 34 1 2.8607 -2.6144 2.5791 35 1 3.6868 -3.7626 4.5911 36 1 3.9202 -2.5306 6.7078 37 1 2.5196 1.0262 4.8202 38 1 3.6048 -0.9666 -3.7055 39 1 1.9659 -0.6674 -4.4273 40 1 4.0330 1.4449 -3.4632 41 1 5.5573 1.0212 -6.6659 42 1 0.9271 1.4310 -3.3325 43 1 2.0869 2.0993 -2.1060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598041719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:05:59 Heat of formation + Delta-G solvation = -7.090414 kcal Electronic energy + Delta-G solvation = -29069.886052 eV Core-core repulsion = 24699.065620 eV Total energy + Delta-G solvation = -4370.820432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.55765 -40.92380 -39.85598 -38.87921 -37.47156 -36.91260 -35.16377 -33.05249 -32.77326 -32.17734 -30.88014 -29.08133 -26.98896 -25.76637 -25.15776 -25.14226 -23.36963 -23.03977 -21.20151 -20.45599 -19.95640 -19.01164 -18.55253 -17.88788 -17.60353 -17.19407 -16.89415 -16.67134 -16.18638 -15.61759 -15.44649 -15.20448 -14.87737 -14.72186 -14.53324 -14.09693 -13.83791 -13.52300 -13.02554 -12.91138 -12.65920 -12.45241 -12.38981 -12.23311 -11.90823 -11.81543 -11.65471 -11.56922 -11.47078 -11.41446 -11.03087 -10.86639 -10.48016 -10.40626 -10.27459 -10.02003 -9.96114 -9.53835 -9.29284 -9.11407 -8.68202 -8.10961 -6.26368 -4.33229 -0.66504 0.01638 0.83671 0.94460 2.15291 2.44696 2.83929 2.99095 3.18598 3.26592 3.28005 3.38899 3.80681 3.84855 4.10208 4.11710 4.24992 4.25758 4.50263 4.61301 4.92856 4.97186 5.02568 5.03556 5.07774 5.25968 5.31132 5.44267 5.57014 5.61656 5.74723 5.93700 5.95593 5.98947 6.03015 6.11849 6.22705 6.37720 6.56194 6.73995 7.07565 7.25875 7.42444 7.70355 7.72785 8.05617 8.21740 8.42430 8.70823 9.34347 10.83241 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.001866 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.276387 B =15005.355004 C =15203.580700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.112 0.888 4 N -0.703 5.703 5 C 0.562 3.438 6 O -0.523 6.523 7 C -0.126 4.126 8 C -0.035 4.035 9 C -0.120 4.120 10 C -0.034 4.034 11 C -0.053 4.053 12 N 0.028 4.972 13 O -0.152 6.152 14 O -0.158 6.158 15 C 0.002 3.998 16 C 0.529 3.471 17 O -0.562 6.562 18 N -0.635 5.635 19 C 0.106 3.894 20 C 0.036 3.964 21 C -0.520 4.520 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.884 5.884 25 Si 0.897 3.103 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.272 1.272 29 C 0.089 3.911 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.265 0.735 42 H 0.081 0.919 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -7.503 19.425 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.130 0.870 4 N -0.357 5.357 5 C 0.348 3.652 6 O -0.400 6.400 7 C -0.130 4.130 8 C -0.054 4.054 9 C -0.138 4.138 10 C -0.053 4.053 11 C -0.135 4.135 12 N 0.549 4.451 13 O -0.369 6.369 14 O -0.373 6.373 15 C -0.017 4.017 16 C 0.317 3.683 17 O -0.443 6.443 18 N -0.368 5.368 19 C -0.015 4.015 20 C 0.017 3.983 21 C -0.558 4.558 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.520 5.520 25 Si 0.725 3.275 26 H -0.204 1.204 27 H -0.211 1.211 28 H -0.197 1.197 29 C -0.033 4.033 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.186 0.814 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.054 -7.796 18.933 21.090 hybrid contribution 0.054 -0.033 -0.659 0.662 sum -5.000 -7.829 18.274 20.500 Atomic orbital electron populations 1.22042 0.92405 1.03130 1.03680 1.20798 0.95966 0.98088 0.82937 0.87046 1.45668 1.66632 1.14826 1.08534 1.17868 0.78207 0.86499 0.82664 1.90843 1.49564 1.14927 1.84657 1.19887 1.04811 0.94351 0.93973 1.21944 0.90646 0.93050 0.99730 1.21227 1.00142 1.01553 0.90896 1.21312 0.92752 0.90897 1.00318 1.21006 1.13475 0.93819 0.85232 1.43539 0.98015 1.01164 1.02396 1.94595 1.52372 0.98513 1.91412 1.94540 1.47196 1.70056 1.25555 1.21106 0.89710 1.02229 0.88697 1.19855 0.78323 0.86388 0.83749 1.90632 1.53486 1.15196 1.84960 1.50019 1.59485 1.16311 1.10972 1.23674 0.96928 1.02649 0.78276 1.20354 0.93683 0.90232 0.94039 1.20867 1.01618 1.38705 0.94630 0.91679 1.25047 0.94740 0.94530 0.99256 1.69945 1.05775 1.42254 1.34025 0.86510 0.78559 0.79145 0.83330 1.20414 1.21124 1.19655 1.23542 1.01890 0.81435 0.96425 0.90887 0.90558 0.91687 0.75301 0.83186 0.82528 0.82334 0.81437 0.92061 0.90672 0.91264 0.92496 0.90114 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.47 37.16 0.35 -1.42 16 2 C 0.13 1.76 2.81 -69.08 -0.19 1.56 16 3 H 0.11 1.59 7.41 -51.93 -0.38 1.21 16 4 N -0.70 -8.17 5.01 -55.88 -0.28 -8.45 16 5 C 0.56 6.61 7.74 -12.33 -0.10 6.52 16 6 O -0.52 -7.78 16.01 5.31 0.09 -7.70 16 7 C -0.13 -1.14 5.87 -104.97 -0.62 -1.75 16 8 C -0.03 -0.21 9.54 -39.18 -0.37 -0.59 16 9 C -0.12 -0.55 10.03 -39.64 -0.40 -0.94 16 10 C -0.03 -0.21 9.55 -39.50 -0.38 -0.58 16 11 C -0.05 -0.47 6.84 -80.01 -0.55 -1.02 16 12 N 0.03 0.32 4.45 33.93 0.15 0.47 16 13 O -0.15 -1.91 18.44 -29.46 -0.54 -2.46 16 14 O -0.16 -1.80 18.44 -29.46 -0.54 -2.34 16 15 C 0.00 0.02 9.10 -39.18 -0.36 -0.33 16 16 C 0.53 9.03 7.28 -10.98 -0.08 8.95 16 17 O -0.56 -10.80 16.81 5.55 0.09 -10.71 16 18 N -0.64 -11.68 3.69 -185.25 -0.68 -12.36 16 19 C 0.11 2.23 8.18 -8.52 -0.07 2.16 16 20 C 0.04 0.80 3.79 -91.26 -0.35 0.45 16 21 C -0.52 -12.59 8.82 -34.44 -0.30 -12.90 16 22 H 0.07 1.52 7.81 -52.49 -0.41 1.11 16 23 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.88 -23.67 13.26 55.43 0.74 -22.93 16 25 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 29 C 0.09 1.57 7.94 -8.52 -0.07 1.50 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 4.17 5.83 -40.82 -0.24 3.94 16 34 H 0.15 0.66 6.41 -52.49 -0.34 0.32 16 35 H 0.16 0.24 8.06 -52.49 -0.42 -0.19 16 36 H 0.16 0.68 7.60 -52.49 -0.40 0.29 16 37 H 0.17 1.72 7.20 -52.49 -0.38 1.34 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 40 H 0.07 1.68 8.11 -51.93 -0.42 1.26 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 43 H 0.06 0.96 8.03 -51.93 -0.42 0.55 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -30.61 382.91 -8.88 -39.49 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.07 Total: 3.48 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.57 Total: 3.24 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.08 Total: -43.28 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.91 Total: -23.21 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.61 -8.88 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598041719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.404 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds