Wall clock time and date at job start Wed Apr 1 2020 07:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46875 * 2 1 4 4 C 1.50700 * 109.47156 * 119.99832 * 2 1 3 5 5 O 1.21281 * 120.00104 * 88.88884 * 4 2 1 6 6 N 1.34782 * 119.99940 * 268.88774 * 4 2 1 7 7 C 1.47421 * 125.65077 * 174.85208 * 6 4 2 8 8 C 1.54903 * 104.93053 * 155.83886 * 7 6 4 9 9 C 1.55440 * 101.44985 * 37.00842 * 8 7 6 10 10 O 1.42896 * 110.71027 * 82.88788 * 9 8 7 11 11 C 1.50700 * 110.86006 * 206.07439 * 9 8 7 12 12 H 1.08001 * 120.00300 * 113.63952 * 11 9 8 13 13 C 1.37874 * 119.99986 * 293.63369 * 11 9 8 14 14 N 1.31513 * 120.00109 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99926 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47049 * 60.00419 * 15 13 11 17 17 H 1.48504 * 109.46968 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47558 * 300.00051 * 15 13 11 19 19 C 1.47025 * 125.64564 * 354.88442 * 6 4 2 20 20 N 1.46503 * 109.47407 * 239.99932 * 2 1 3 21 21 C 1.34948 * 126.03459 * 324.71573 * 20 2 1 22 22 C 1.35314 * 107.74645 * 179.83989 * 21 20 2 23 23 C 1.39874 * 107.91787 * 0.42308 * 22 21 20 24 24 C 1.50695 * 125.89729 * 179.76418 * 23 22 21 25 25 F 1.39907 * 109.47138 * 184.99893 * 24 23 22 26 26 F 1.39905 * 109.46922 * 304.99356 * 24 23 22 27 27 F 1.39902 * 109.47594 * 64.99678 * 24 23 22 28 28 N 1.30833 * 108.20044 * 359.73620 * 23 22 21 29 29 H 1.08994 * 109.47094 * 58.49843 * 1 2 3 30 30 H 1.09006 * 109.46987 * 178.49699 * 1 2 3 31 31 H 1.08995 * 109.47327 * 298.49154 * 1 2 3 32 32 H 1.09004 * 110.37055 * 274.73943 * 7 6 4 33 33 H 1.09006 * 110.36004 * 36.94627 * 7 6 4 34 34 H 1.09000 * 111.00571 * 155.14203 * 8 7 6 35 35 H 1.09004 * 111.00602 * 278.99158 * 8 7 6 36 36 H 0.96704 * 113.99831 * 66.45732 * 10 9 8 37 37 H 0.97000 * 120.00127 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.87782 * 300.44918 * 19 6 4 39 39 H 1.08994 * 109.88484 * 61.46368 * 19 6 4 40 40 H 1.08007 * 126.12834 * 359.97438 * 21 20 2 41 41 H 1.07999 * 126.04191 * 180.16077 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.2153 -1.9091 1.2065 6 7 2.2784 -0.0136 2.3577 7 6 2.6674 -0.5909 3.6571 8 6 3.4115 0.5503 4.3942 9 6 2.5900 1.7924 3.9487 10 8 1.4238 1.9447 4.7602 11 6 3.4353 3.0393 3.9942 12 1 3.6855 3.5557 3.0793 13 6 3.8892 3.5207 5.2038 14 7 3.5840 2.8922 6.3180 15 14 4.9375 5.0658 5.2600 16 1 4.1747 6.2027 4.6848 17 1 5.2943 5.3708 6.6689 18 1 6.1773 4.8519 4.4712 19 6 2.2025 1.4483 2.4951 20 7 2.0184 -0.6906 -1.1962 21 6 1.4433 -1.7592 -1.7863 22 6 2.1964 -2.0925 -2.8600 23 6 3.2739 -1.2029 -2.9226 24 6 4.3673 -1.2110 -3.9596 25 9 5.3274 -0.2473 -3.6326 26 9 4.9677 -2.4742 -3.9942 27 9 3.8222 -0.9192 -5.2145 28 7 3.1682 -0.3621 -1.9258 29 1 -0.3633 0.5369 -0.8762 30 1 -0.3633 -1.0274 -0.0270 31 1 -0.3634 0.4902 0.9031 32 1 1.7829 -0.8919 4.2186 33 1 3.3307 -1.4434 3.5100 34 1 3.3630 0.4144 5.4747 35 1 4.4455 0.6241 4.0573 36 1 1.6127 2.1617 5.6835 37 1 3.9036 3.2307 7.1689 38 1 2.8992 1.9222 1.8036 39 1 1.1875 1.7878 2.2892 40 1 0.5419 -2.2578 -1.4613 41 1 2.0024 -2.9048 -3.5448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601650318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:07:24 Heat of formation + Delta-G solvation = -146.720596 kcal Electronic energy + Delta-G solvation = -31084.852032 eV Core-core repulsion = 26166.120040 eV Total energy + Delta-G solvation = -4918.731992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.25826 -47.79716 -47.74122 -41.74728 -39.76678 -37.56708 -34.86702 -34.48488 -32.27761 -31.14915 -30.39358 -29.73487 -28.49692 -26.68361 -25.40078 -24.68225 -22.58580 -21.30961 -21.02501 -20.06082 -19.20078 -18.65772 -18.28498 -18.00695 -17.56751 -17.13222 -16.70020 -15.64503 -15.37931 -15.08920 -14.73134 -14.61860 -14.38793 -14.27095 -14.18570 -14.17481 -13.93109 -13.89944 -13.89522 -13.59622 -13.13197 -13.05257 -12.74519 -12.49158 -12.24864 -12.08078 -12.06815 -11.86222 -11.46282 -11.42830 -11.17770 -10.95395 -10.69148 -10.61466 -10.32241 -10.24448 -9.72593 -9.51515 -8.92355 -8.77908 -8.36307 -8.29337 -6.41457 -4.50016 1.35439 1.68392 2.18561 2.52632 2.71983 3.14736 3.20403 3.20607 3.25716 3.53748 3.83356 4.15493 4.25284 4.33899 4.41967 4.55692 4.66036 4.85188 5.05219 5.20436 5.24357 5.35522 5.44208 5.50997 5.63099 5.67012 5.74800 5.86738 5.98298 6.08030 6.12620 6.36483 6.58548 6.71383 6.78781 7.14989 7.16103 7.19200 7.60830 7.74474 7.83938 8.19739 8.51294 9.18115 9.29595 10.66355 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014336 B = 0.002814 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.706930 B = 9948.009311 C =11032.480442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.129 0.871 4 C 0.515 3.485 5 O -0.543 6.543 6 N -0.598 5.598 7 C 0.105 3.895 8 C -0.138 4.138 9 C 0.252 3.748 10 O -0.587 6.587 11 C -0.541 4.541 12 H 0.065 0.935 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.904 3.096 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.105 3.895 20 N -0.333 5.333 21 C 0.088 3.912 22 C -0.238 4.238 23 C -0.022 4.022 24 C 0.558 3.442 25 F -0.167 7.167 26 F -0.167 7.167 27 F -0.169 7.169 28 N -0.233 5.233 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.389 0.611 37 H 0.271 0.729 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.185 0.815 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.443 -7.082 -14.427 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.147 0.853 4 C 0.300 3.700 5 O -0.421 6.421 6 N -0.330 5.330 7 C -0.017 4.017 8 C -0.177 4.177 9 C 0.212 3.788 10 O -0.398 6.398 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.017 4.017 20 N -0.115 5.115 21 C -0.057 4.057 22 C -0.267 4.267 23 C -0.189 4.189 24 C 0.501 3.499 25 F -0.148 7.148 26 F -0.149 7.149 27 F -0.151 7.151 28 N -0.056 5.056 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.202 0.798 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.144 -6.803 -14.162 16.532 hybrid contribution 0.767 0.272 0.241 0.849 sum -4.377 -6.531 -13.921 15.988 Atomic orbital electron populations 1.22104 0.89628 1.04501 1.05231 1.21374 0.96877 0.97884 0.80373 0.85328 1.19994 0.79049 0.87321 0.83632 1.90707 1.53425 1.14369 1.83599 1.48611 1.65423 1.09167 1.09820 1.22430 0.99050 0.97718 0.82501 1.23403 0.99103 0.94508 1.00659 1.19403 0.82979 0.92200 0.84238 1.86057 1.33686 1.93396 1.26672 1.21470 1.32376 1.10270 0.93774 0.91660 1.24984 0.95308 0.97267 0.95326 1.69550 1.45868 1.39868 0.98231 0.86444 0.80516 0.82628 0.77264 1.19904 1.21020 1.19969 1.22381 1.01084 0.77761 1.00503 1.48429 1.18159 1.23846 1.21111 1.22542 1.00034 0.89830 0.93316 1.21116 0.96991 1.05176 1.03433 1.21965 0.98611 1.00191 0.98091 1.16870 0.79798 0.74031 0.79181 1.93247 1.65442 1.63696 1.92394 1.93235 1.84408 1.40765 1.96468 1.93227 1.85765 1.93217 1.42856 1.77401 1.01716 1.21543 1.04954 0.89923 0.90609 0.88520 0.91712 0.91724 0.89395 0.91385 0.75868 0.91865 0.90570 0.91495 0.79816 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.86 37.16 0.33 -1.14 16 2 C 0.14 1.87 3.37 -69.08 -0.23 1.63 16 3 H 0.13 1.66 7.05 -51.93 -0.37 1.29 16 4 C 0.51 8.80 7.01 -10.98 -0.08 8.73 16 5 O -0.54 -10.74 16.65 5.56 0.09 -10.65 16 6 N -0.60 -10.82 3.33 -170.52 -0.57 -11.38 16 7 C 0.10 1.97 6.92 -2.53 -0.02 1.96 16 8 C -0.14 -2.89 5.70 -24.43 -0.14 -3.03 16 9 C 0.25 5.56 0.86 -89.78 -0.08 5.48 16 10 O -0.59 -13.54 13.09 -35.23 -0.46 -14.00 16 11 C -0.54 -13.12 8.22 -34.44 -0.28 -13.40 16 12 H 0.07 1.56 7.53 -52.49 -0.40 1.17 16 13 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 14 N -0.90 -21.99 10.71 55.43 0.59 -21.40 16 15 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 C 0.10 1.95 5.39 -3.06 -0.02 1.93 16 20 N -0.33 -4.67 3.30 -55.99 -0.18 -4.85 16 21 C 0.09 1.02 10.25 -17.22 -0.18 0.85 16 22 C -0.24 -2.75 10.73 -40.01 -0.43 -3.18 16 23 C -0.02 -0.30 6.51 -82.41 -0.54 -0.84 16 24 C 0.56 7.05 3.51 36.00 0.13 7.18 16 25 F -0.17 -2.32 17.14 2.25 0.04 -2.28 16 26 F -0.17 -2.06 17.30 2.25 0.04 -2.02 16 27 F -0.17 -1.96 17.30 2.25 0.04 -1.92 16 28 N -0.23 -3.68 12.35 33.67 0.42 -3.27 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.65 7.08 -51.93 -0.37 0.28 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.21 7.99 -51.93 -0.41 0.79 16 34 H 0.09 1.92 7.79 -51.93 -0.40 1.52 16 35 H 0.07 1.48 8.05 -51.93 -0.42 1.07 16 36 H 0.39 9.25 6.98 45.56 0.32 9.56 16 37 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 38 H 0.08 1.38 7.40 -51.93 -0.38 1.00 16 39 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 40 H 0.18 1.51 7.23 -52.48 -0.38 1.13 16 41 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -28.50 360.58 -5.26 -33.76 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.06 Total: 10.37 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -1.62 Total: 7.88 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.26 Total: -40.90 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.37 Total: -24.65 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.12 Total: -6.22 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.50 -5.26 -33.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601650318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.961 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds