Wall clock time and date at job start Wed Apr 1 2020 07:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46875 * 2 1 4 4 C 1.50700 * 109.47156 * 119.99832 * 2 1 3 5 5 O 1.21281 * 120.00104 * 88.88884 * 4 2 1 6 6 N 1.34782 * 119.99940 * 268.88774 * 4 2 1 7 7 C 1.47421 * 125.65077 * 174.85208 * 6 4 2 8 8 C 1.54903 * 104.93053 * 155.83886 * 7 6 4 9 9 C 1.55440 * 101.44985 * 37.00842 * 8 7 6 10 10 O 1.42896 * 110.71027 * 82.88788 * 9 8 7 11 11 C 1.50700 * 110.86006 * 206.07439 * 9 8 7 12 12 H 1.08001 * 120.00300 * 113.63952 * 11 9 8 13 13 C 1.37874 * 119.99986 * 293.63369 * 11 9 8 14 14 N 1.31513 * 120.00109 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99926 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47049 * 60.00419 * 15 13 11 17 17 H 1.48504 * 109.46968 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47558 * 300.00051 * 15 13 11 19 19 C 1.47025 * 125.64564 * 354.88442 * 6 4 2 20 20 N 1.46503 * 109.47407 * 239.99932 * 2 1 3 21 21 C 1.34948 * 126.03459 * 324.71573 * 20 2 1 22 22 C 1.35314 * 107.74645 * 179.83989 * 21 20 2 23 23 C 1.39874 * 107.91787 * 0.42308 * 22 21 20 24 24 C 1.50695 * 125.89729 * 179.76418 * 23 22 21 25 25 F 1.39907 * 109.47138 * 184.99893 * 24 23 22 26 26 F 1.39905 * 109.46922 * 304.99356 * 24 23 22 27 27 F 1.39902 * 109.47594 * 64.99678 * 24 23 22 28 28 N 1.30833 * 108.20044 * 359.73620 * 23 22 21 29 29 H 1.08994 * 109.47094 * 58.49843 * 1 2 3 30 30 H 1.09006 * 109.46987 * 178.49699 * 1 2 3 31 31 H 1.08995 * 109.47327 * 298.49154 * 1 2 3 32 32 H 1.09004 * 110.37055 * 274.73943 * 7 6 4 33 33 H 1.09006 * 110.36004 * 36.94627 * 7 6 4 34 34 H 1.09000 * 111.00571 * 155.14203 * 8 7 6 35 35 H 1.09004 * 111.00602 * 278.99158 * 8 7 6 36 36 H 0.96704 * 113.99831 * 66.45732 * 10 9 8 37 37 H 0.97000 * 120.00127 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.87782 * 300.44918 * 19 6 4 39 39 H 1.08994 * 109.88484 * 61.46368 * 19 6 4 40 40 H 1.08007 * 126.12834 * 359.97438 * 21 20 2 41 41 H 1.07999 * 126.04191 * 180.16077 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.2153 -1.9091 1.2065 6 7 2.2784 -0.0136 2.3577 7 6 2.6674 -0.5909 3.6571 8 6 3.4115 0.5503 4.3942 9 6 2.5900 1.7924 3.9487 10 8 1.4238 1.9447 4.7602 11 6 3.4353 3.0393 3.9942 12 1 3.6855 3.5557 3.0793 13 6 3.8892 3.5207 5.2038 14 7 3.5840 2.8922 6.3180 15 14 4.9375 5.0658 5.2600 16 1 4.1747 6.2027 4.6848 17 1 5.2943 5.3708 6.6689 18 1 6.1773 4.8519 4.4712 19 6 2.2025 1.4483 2.4951 20 7 2.0184 -0.6906 -1.1962 21 6 1.4433 -1.7592 -1.7863 22 6 2.1964 -2.0925 -2.8600 23 6 3.2739 -1.2029 -2.9226 24 6 4.3673 -1.2110 -3.9596 25 9 5.3274 -0.2473 -3.6326 26 9 4.9677 -2.4742 -3.9942 27 9 3.8222 -0.9192 -5.2145 28 7 3.1682 -0.3621 -1.9258 29 1 -0.3633 0.5369 -0.8762 30 1 -0.3633 -1.0274 -0.0270 31 1 -0.3634 0.4902 0.9031 32 1 1.7829 -0.8919 4.2186 33 1 3.3307 -1.4434 3.5100 34 1 3.3630 0.4144 5.4747 35 1 4.4455 0.6241 4.0573 36 1 1.6127 2.1617 5.6835 37 1 3.9036 3.2307 7.1689 38 1 2.8992 1.9222 1.8036 39 1 1.1875 1.7878 2.2892 40 1 0.5419 -2.2578 -1.4613 41 1 2.0024 -2.9048 -3.5448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601650318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:07:24 Heat of formation + Delta-G solvation = -165.296109 kcal Electronic energy + Delta-G solvation = -31085.657526 eV Core-core repulsion = 26166.120040 eV Total energy + Delta-G solvation = -4919.537487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.25240 -48.77237 -48.75743 -42.73908 -41.16044 -39.13336 -36.14653 -35.91184 -34.13601 -32.30283 -31.42160 -31.03929 -30.10108 -27.62856 -27.05720 -25.87653 -23.90613 -22.29152 -22.16347 -21.74638 -20.43187 -19.64222 -19.36962 -19.24785 -18.94044 -18.46267 -17.91353 -17.01105 -16.93483 -16.64912 -15.97294 -15.74523 -15.63341 -15.62288 -15.36025 -15.17935 -14.91773 -14.89865 -14.88843 -14.81573 -14.46527 -14.16209 -13.94583 -13.77529 -13.56021 -13.44405 -13.26295 -13.20125 -13.09593 -12.78695 -12.65765 -12.42786 -12.30150 -12.15402 -12.04074 -11.54168 -11.27087 -10.79997 -10.62452 -10.15802 -9.90207 -9.77113 -8.26195 -6.40156 0.33748 0.69637 1.26421 1.33152 1.43854 1.46332 1.52144 1.64437 1.94554 2.38451 2.55310 2.85564 2.99589 3.15695 3.27822 3.42083 3.66326 3.75720 3.80174 4.02946 4.12086 4.19327 4.28427 4.43121 4.47312 4.53337 4.59819 4.63131 4.64431 4.80912 5.01119 5.07499 5.10629 5.16070 5.40082 5.44064 5.70782 5.75448 6.00343 6.17397 6.35256 6.64563 6.82336 7.30991 7.42201 8.79850 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014336 B = 0.002814 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.706930 B = 9948.009311 C =11032.480442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.130 0.870 4 C 0.514 3.486 5 O -0.571 6.571 6 N -0.602 5.602 7 C 0.112 3.888 8 C -0.130 4.130 9 C 0.238 3.762 10 O -0.590 6.590 11 C -0.561 4.561 12 H 0.063 0.937 13 C 0.036 3.964 14 N -0.910 5.910 15 Si 0.957 3.043 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.277 1.277 19 C 0.115 3.885 20 N -0.342 5.342 21 C 0.090 3.910 22 C -0.237 4.237 23 C -0.032 4.032 24 C 0.562 3.438 25 F -0.177 7.177 26 F -0.165 7.165 27 F -0.162 7.162 28 N -0.279 5.279 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.383 0.617 37 H 0.272 0.728 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.219 0.781 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.741 -7.369 -15.791 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.148 0.852 4 C 0.301 3.699 5 O -0.451 6.451 6 N -0.334 5.334 7 C -0.010 4.010 8 C -0.169 4.169 9 C 0.198 3.802 10 O -0.400 6.400 11 C -0.599 4.599 12 H 0.081 0.919 13 C -0.166 4.166 14 N -0.550 5.550 15 Si 0.783 3.217 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.007 4.007 20 N -0.125 5.125 21 C -0.055 4.055 22 C -0.266 4.266 23 C -0.198 4.198 24 C 0.505 3.495 25 F -0.159 7.159 26 F -0.147 7.147 27 F -0.143 7.143 28 N -0.103 5.103 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.235 0.765 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.447 -7.089 -15.550 18.265 hybrid contribution 1.188 0.306 0.651 1.389 sum -5.259 -6.783 -14.899 17.194 Atomic orbital electron populations 1.22171 0.86323 1.05784 1.06513 1.21460 0.99155 0.97054 0.78409 0.85248 1.20703 0.77933 0.87097 0.84134 1.90685 1.54548 1.15732 1.84132 1.48619 1.65873 1.08885 1.09994 1.22258 0.98948 0.96756 0.83064 1.23199 0.98406 0.95336 0.99989 1.19568 0.82800 0.91807 0.86004 1.86048 1.34156 1.93396 1.26364 1.21781 1.32961 1.11287 0.93833 0.91876 1.25596 0.96263 0.99463 0.95243 1.69625 1.46308 1.40643 0.98398 0.85627 0.79042 0.79996 0.77062 1.19623 1.20865 1.20221 1.22206 1.02226 0.78078 0.98181 1.48541 1.18062 1.24751 1.21190 1.23212 1.00730 0.88805 0.92716 1.21554 0.95911 1.05275 1.03880 1.22251 0.99291 1.00465 0.97838 1.16799 0.79481 0.73844 0.79331 1.93223 1.65903 1.64195 1.92538 1.93236 1.84382 1.40558 1.96479 1.93239 1.85604 1.93170 1.42324 1.77334 1.03291 1.23339 1.06374 0.87503 0.89424 0.88236 0.91173 0.91793 0.90792 0.92908 0.76565 0.91889 0.90282 0.89584 0.76464 0.79317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.86 71.98 0.64 -1.69 16 2 C 0.14 3.55 3.37 44.25 0.15 3.70 16 3 H 0.13 3.14 7.05 -2.39 -0.02 3.12 16 4 C 0.51 16.89 7.01 87.66 0.61 17.50 16 5 O -0.57 -21.92 16.65 -3.03 -0.05 -21.97 16 6 N -0.60 -21.21 3.33 -811.79 -2.70 -23.91 16 7 C 0.11 4.20 6.92 86.85 0.60 4.80 16 8 C -0.13 -5.54 5.70 32.08 0.18 -5.36 16 9 C 0.24 10.48 0.86 -10.25 -0.01 10.47 16 10 O -0.59 -27.08 13.09 -148.98 -1.95 -29.03 16 11 C -0.56 -27.21 8.22 25.60 0.21 -27.00 16 12 H 0.06 3.01 7.53 -2.91 -0.02 2.99 16 13 C 0.04 1.73 5.28 84.65 0.45 2.18 16 14 N -0.91 -44.96 10.71 21.45 0.23 -44.73 16 15 Si 0.96 39.56 29.54 68.60 2.03 41.59 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 19 C 0.12 4.17 5.39 86.73 0.47 4.63 16 20 N -0.34 -8.96 3.30 -331.05 -1.09 -10.06 16 21 C 0.09 1.83 10.25 83.54 0.86 2.69 16 22 C -0.24 -4.88 10.73 21.99 0.24 -4.64 16 23 C -0.03 -0.85 6.51 43.10 0.28 -0.57 16 24 C 0.56 13.70 3.51 71.23 0.25 13.95 16 25 F -0.18 -4.91 17.14 44.97 0.77 -4.14 16 26 F -0.17 -3.88 17.30 44.97 0.78 -3.10 16 27 F -0.16 -3.55 17.30 44.97 0.78 -2.77 16 28 N -0.28 -8.61 12.35 -47.39 -0.59 -9.19 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.17 7.08 -2.38 -0.02 1.15 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 33 H 0.06 2.39 7.99 -2.38 -0.02 2.37 16 34 H 0.07 3.31 7.79 -2.39 -0.02 3.29 16 35 H 0.05 2.36 8.05 -2.38 -0.02 2.34 16 36 H 0.38 18.39 6.98 -74.05 -0.52 17.87 16 37 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 38 H 0.08 2.81 7.40 -2.39 -0.02 2.79 16 39 H 0.09 2.77 8.07 -2.39 -0.02 2.76 16 40 H 0.22 2.68 7.23 -2.91 -0.02 2.66 16 41 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -61.02 360.58 3.71 -57.31 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.58 Total: 29.33 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 4.92 Total: 20.66 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.15 Total: -87.89 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -2.00 Total: -51.00 kcal Atomic # 9 Polarization: -12.34 SS G_CDS: 2.33 Total: -10.01 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -61.02 3.71 -57.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601650318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.990 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds