Wall clock time and date at job start Wed Apr 1 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47178 * 2 1 4 4 C 1.50695 * 109.47367 * 120.00228 * 2 1 3 5 5 H 1.08005 * 120.00317 * 114.53756 * 4 2 1 6 6 C 1.37877 * 120.00103 * 294.53039 * 4 2 1 7 7 N 1.31520 * 119.99836 * 0.66491 * 6 4 2 8 8 Si 1.86804 * 120.00215 * 180.93639 * 6 4 2 9 9 H 1.48502 * 109.46745 * 264.73559 * 8 6 4 10 10 H 1.48501 * 109.46747 * 24.73272 * 8 6 4 11 11 H 1.48491 * 109.47197 * 144.73392 * 8 6 4 12 12 N 1.46503 * 109.47168 * 240.00640 * 2 1 3 13 13 C 1.46499 * 119.99556 * 299.99670 * 12 2 1 14 14 C 1.34767 * 120.00424 * 119.99875 * 12 2 1 15 15 O 1.21367 * 120.00365 * 5.49774 * 14 12 2 16 16 C 1.49337 * 120.00235 * 185.50370 * 14 12 2 17 17 O 1.21388 * 119.99683 * 5.12561 * 16 14 12 18 18 N 1.34780 * 120.00136 * 185.13225 * 16 14 12 19 19 C 1.39858 * 119.99698 * 185.15304 * 18 16 14 20 20 C 1.38943 * 119.97845 * 142.62115 * 19 18 16 21 21 C 1.38212 * 120.17475 * 179.97438 * 20 19 18 22 22 C 1.38430 * 119.97733 * 0.02562 * 21 20 19 23 23 C 1.39438 * 119.99243 * 0.02562 * 22 21 20 24 24 C 1.38424 * 120.04996 * 359.67768 * 23 22 21 25 25 N 1.40217 * 119.27838 * 179.90888 * 23 22 21 26 26 C 1.35080 * 118.99776 * 15.49540 * 25 23 22 27 27 O 1.21295 * 120.13132 * 181.65371 * 26 25 23 28 28 C 1.50757 * 119.73223 * 1.66652 * 26 25 23 29 29 O 1.36067 * 120.58457 * 180.02562 * 22 21 20 30 30 H 1.08999 * 109.47286 * 56.89951 * 1 2 3 31 31 H 1.08994 * 109.46927 * 176.89718 * 1 2 3 32 32 H 1.09004 * 109.46837 * 296.89586 * 1 2 3 33 33 H 0.96999 * 119.99496 * 180.26998 * 7 6 4 34 34 H 1.09000 * 109.47149 * 95.44328 * 13 12 2 35 35 H 1.09004 * 109.47320 * 215.44367 * 13 12 2 36 36 H 1.09003 * 109.47178 * 335.44274 * 13 12 2 37 37 H 0.97002 * 119.99616 * 5.14870 * 18 16 14 38 38 H 1.08002 * 119.90854 * 359.95173 * 20 19 18 39 39 H 1.08008 * 120.00899 * 179.97438 * 21 20 19 40 40 H 1.08006 * 120.11250 * 180.31306 * 24 23 22 41 41 H 0.96992 * 120.50062 * 195.47715 * 25 23 22 42 42 H 1.08999 * 109.44104 * 208.60562 * 28 26 25 43 43 H 1.09003 * 109.41222 * 88.69391 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5786 -1.6371 1.1337 6 6 1.7948 -0.1774 2.4795 7 7 1.1185 0.9444 2.5980 8 14 2.4401 -1.0443 4.0032 9 1 1.3753 -1.9123 4.5671 10 1 3.6155 -1.8757 3.6391 11 1 2.8425 -0.0341 5.0144 12 7 2.0184 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.1689 1.0934 -1.8437 16 6 3.1893 -0.6987 -3.3614 17 8 2.7388 -1.7898 -3.6440 18 7 4.0472 -0.0857 -4.2010 19 6 4.3348 -0.6554 -5.4455 20 6 4.5115 0.1587 -6.5575 21 6 4.7964 -0.4000 -7.7892 22 6 4.9058 -1.7740 -7.9169 23 6 4.7281 -2.5939 -6.8031 24 6 4.4488 -2.0345 -5.5681 25 7 4.8404 -3.9838 -6.9498 26 6 5.4191 -4.4799 -8.0649 27 8 5.5000 -5.6793 -8.2269 28 6 5.9643 -3.5369 -9.1072 29 8 5.1864 -2.3371 -9.1234 30 1 -0.3634 0.5612 -0.8609 31 1 -0.3633 -1.0261 -0.0556 32 1 -0.3633 0.4649 0.9165 33 1 0.9548 1.3214 3.4766 34 1 0.7925 -2.1448 -2.0801 35 1 2.5023 -2.6059 -1.9006 36 1 1.4353 -2.5721 -0.4762 37 1 4.4650 0.7506 -3.9421 38 1 4.4255 1.2308 -6.4592 39 1 4.9327 0.2353 -8.6520 40 1 4.3159 -2.6683 -4.7037 41 1 4.5077 -4.5800 -6.2608 42 1 5.9178 -4.0127 -10.0867 43 1 7.0004 -3.2948 -8.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615250074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:25 Heat of formation + Delta-G solvation = -87.946990 kcal Electronic energy + Delta-G solvation = -29934.061394 eV Core-core repulsion = 25559.734758 eV Total energy + Delta-G solvation = -4374.326637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83581 -40.78009 -39.25589 -38.50056 -37.52533 -36.05171 -35.55124 -34.27090 -32.81061 -30.49130 -30.01525 -29.62825 -27.98386 -26.36614 -25.35924 -24.93849 -23.58254 -23.31735 -21.15885 -20.05711 -19.50405 -19.22221 -18.35280 -17.59959 -17.28359 -16.80755 -16.53292 -16.29408 -16.00452 -15.62741 -15.41435 -15.19936 -14.91347 -14.70678 -14.41034 -14.30867 -13.77642 -13.59938 -13.44850 -13.23019 -13.04592 -12.60192 -12.47337 -12.04911 -11.88793 -11.71155 -11.66791 -11.34051 -11.14553 -10.94080 -10.85787 -10.84245 -10.55885 -10.41332 -10.26509 -10.06301 -9.29196 -8.99370 -8.79899 -8.54737 -8.08363 -7.83836 -6.18247 -4.26243 0.60319 0.84950 1.67676 1.93782 2.32876 2.54410 2.89470 3.21441 3.28503 3.29358 3.32162 3.56393 3.59722 3.89827 4.27825 4.32371 4.47492 4.63269 4.67762 4.77061 4.88728 4.92906 5.15063 5.34934 5.37241 5.64198 5.87834 5.90932 5.96283 6.11289 6.13145 6.31162 6.41134 6.49491 6.58735 6.66175 6.85769 6.89230 6.97188 7.15963 7.30265 7.36907 7.57395 7.70916 7.86113 8.00251 8.25253 8.50420 8.78837 9.40157 10.88378 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.002263 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.093368 B =12370.243304 C =13126.163513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.254 3.746 3 H 0.070 0.930 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.551 5.551 13 C 0.081 3.919 14 C 0.493 3.507 15 O -0.533 6.533 16 C 0.509 3.491 17 O -0.500 6.500 18 N -0.652 5.652 19 C 0.162 3.838 20 C -0.130 4.130 21 C -0.086 4.086 22 C 0.058 3.942 23 C 0.111 3.889 24 C -0.122 4.122 25 N -0.656 5.656 26 C 0.491 3.509 27 O -0.514 6.514 28 C 0.051 3.949 29 O -0.301 6.301 30 H 0.015 0.985 31 H 0.033 0.967 32 H 0.089 0.911 33 H 0.265 0.735 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.426 0.574 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.419 0.581 42 H 0.145 0.855 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -3.627 -21.053 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.281 5.281 13 C -0.062 4.062 14 C 0.274 3.726 15 O -0.411 6.411 16 C 0.293 3.707 17 O -0.374 6.374 18 N -0.299 5.299 19 C 0.066 3.934 20 C -0.151 4.151 21 C -0.105 4.105 22 C 0.012 3.988 23 C 0.014 3.986 24 C -0.145 4.145 25 N -0.303 5.303 26 C 0.278 3.722 27 O -0.388 6.388 28 C -0.027 4.027 29 O -0.216 6.216 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.264 0.736 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.259 0.741 42 H 0.163 0.837 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.097 -4.234 -21.311 23.187 hybrid contribution 0.306 -0.526 1.536 1.653 sum 8.403 -4.761 -19.774 22.007 Atomic orbital electron populations 1.22067 0.97683 0.99354 1.01145 1.19194 0.91093 0.94832 0.79393 0.91194 1.21252 1.36488 1.08924 0.90140 0.91973 1.24897 0.94830 0.94900 0.99023 1.69908 1.39319 1.18885 1.24201 0.86444 0.79186 0.79260 0.82316 1.20572 1.19822 1.20989 1.48281 1.45547 1.12408 1.21901 1.21952 1.00789 0.81662 1.01783 1.19553 0.82044 0.86759 0.84279 1.90738 1.54775 1.18638 1.76985 1.21018 0.78389 0.85503 0.85779 1.90704 1.52919 1.19259 1.74511 1.43265 1.44348 1.27560 1.14776 1.17430 0.99154 0.91510 0.85290 1.20842 1.03572 1.00456 0.90218 1.20269 1.01326 0.91004 0.97944 1.18563 1.04786 0.92156 0.83331 1.17787 1.03851 0.82664 0.94251 1.20697 1.02957 0.94584 0.96270 1.43742 1.58572 1.05639 1.22394 1.21572 0.77823 0.89995 0.82823 1.90825 1.55420 1.15442 1.77139 1.23181 0.96055 0.83032 1.00444 1.86264 1.69685 1.39429 1.26219 0.96607 0.94738 0.89204 0.92517 0.93124 0.90827 0.90346 0.73564 0.84007 0.83703 0.83226 0.74143 0.83737 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.10 37.16 0.34 -2.95 16 2 C 0.25 6.20 2.53 -69.08 -0.17 6.03 16 3 H 0.07 1.95 6.91 -51.93 -0.36 1.59 16 4 C -0.53 -13.76 7.98 -34.44 -0.28 -14.04 16 5 H 0.06 1.59 7.23 -52.48 -0.38 1.21 16 6 C 0.07 1.76 5.32 -17.82 -0.09 1.66 16 7 N -0.89 -24.24 11.69 55.43 0.65 -23.60 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.55 -11.47 2.75 -175.81 -0.48 -11.96 16 13 C 0.08 1.44 8.10 59.85 0.48 1.92 16 14 C 0.49 9.61 7.72 -11.64 -0.09 9.52 16 15 O -0.53 -11.56 15.84 5.48 0.09 -11.47 16 16 C 0.51 7.94 7.54 -11.64 -0.09 7.85 16 17 O -0.50 -8.01 10.94 5.46 0.06 -7.95 16 18 N -0.65 -7.92 5.31 -10.26 -0.05 -7.97 16 19 C 0.16 1.73 6.25 -83.68 -0.52 1.21 16 20 C -0.13 -1.07 9.96 -39.33 -0.39 -1.46 16 21 C -0.09 -0.67 9.99 -39.52 -0.39 -1.06 16 22 C 0.06 0.54 6.44 -39.06 -0.25 0.29 16 23 C 0.11 1.12 6.54 -83.51 -0.55 0.57 16 24 C -0.12 -1.35 8.58 -39.26 -0.34 -1.69 16 25 N -0.66 -6.37 5.47 -9.67 -0.05 -6.42 16 26 C 0.49 4.88 7.94 -10.82 -0.09 4.79 16 27 O -0.51 -6.66 17.95 5.54 0.10 -6.56 16 28 C 0.05 0.35 7.17 36.03 0.26 0.61 16 29 O -0.30 -2.61 10.45 -19.95 -0.21 -2.82 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.03 0.73 7.57 -51.93 -0.39 0.33 16 32 H 0.09 2.24 6.43 -51.93 -0.33 1.91 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.07 1.21 5.95 -51.93 -0.31 0.90 16 36 H 0.08 1.42 7.01 -51.93 -0.36 1.06 16 37 H 0.43 4.56 8.33 -40.82 -0.34 4.22 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.15 1.79 6.40 -52.48 -0.34 1.45 16 41 H 0.42 3.74 8.89 -40.82 -0.36 3.37 16 42 H 0.15 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -31.77 364.12 -6.46 -38.23 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.85 Total: 6.36 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -2.17 Total: 13.25 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.06 Total: -49.94 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: 0.04 Total: -28.80 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.77 -6.46 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615250074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.720 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds