Wall clock time and date at job start Wed Apr 1 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47178 * 2 1 4 4 C 1.50695 * 109.47367 * 120.00228 * 2 1 3 5 5 H 1.08005 * 120.00317 * 114.53756 * 4 2 1 6 6 C 1.37877 * 120.00103 * 294.53039 * 4 2 1 7 7 N 1.31520 * 119.99836 * 0.66491 * 6 4 2 8 8 Si 1.86804 * 120.00215 * 180.93639 * 6 4 2 9 9 H 1.48502 * 109.46745 * 264.73559 * 8 6 4 10 10 H 1.48501 * 109.46747 * 24.73272 * 8 6 4 11 11 H 1.48491 * 109.47197 * 144.73392 * 8 6 4 12 12 N 1.46503 * 109.47168 * 240.00640 * 2 1 3 13 13 C 1.46499 * 119.99556 * 299.99670 * 12 2 1 14 14 C 1.34767 * 120.00424 * 119.99875 * 12 2 1 15 15 O 1.21367 * 120.00365 * 5.49774 * 14 12 2 16 16 C 1.49337 * 120.00235 * 185.50370 * 14 12 2 17 17 O 1.21388 * 119.99683 * 5.12561 * 16 14 12 18 18 N 1.34780 * 120.00136 * 185.13225 * 16 14 12 19 19 C 1.39858 * 119.99698 * 185.15304 * 18 16 14 20 20 C 1.38943 * 119.97845 * 142.62115 * 19 18 16 21 21 C 1.38212 * 120.17475 * 179.97438 * 20 19 18 22 22 C 1.38430 * 119.97733 * 0.02562 * 21 20 19 23 23 C 1.39438 * 119.99243 * 0.02562 * 22 21 20 24 24 C 1.38424 * 120.04996 * 359.67768 * 23 22 21 25 25 N 1.40217 * 119.27838 * 179.90888 * 23 22 21 26 26 C 1.35080 * 118.99776 * 15.49540 * 25 23 22 27 27 O 1.21295 * 120.13132 * 181.65371 * 26 25 23 28 28 C 1.50757 * 119.73223 * 1.66652 * 26 25 23 29 29 O 1.36067 * 120.58457 * 180.02562 * 22 21 20 30 30 H 1.08999 * 109.47286 * 56.89951 * 1 2 3 31 31 H 1.08994 * 109.46927 * 176.89718 * 1 2 3 32 32 H 1.09004 * 109.46837 * 296.89586 * 1 2 3 33 33 H 0.96999 * 119.99496 * 180.26998 * 7 6 4 34 34 H 1.09000 * 109.47149 * 95.44328 * 13 12 2 35 35 H 1.09004 * 109.47320 * 215.44367 * 13 12 2 36 36 H 1.09003 * 109.47178 * 335.44274 * 13 12 2 37 37 H 0.97002 * 119.99616 * 5.14870 * 18 16 14 38 38 H 1.08002 * 119.90854 * 359.95173 * 20 19 18 39 39 H 1.08008 * 120.00899 * 179.97438 * 21 20 19 40 40 H 1.08006 * 120.11250 * 180.31306 * 24 23 22 41 41 H 0.96992 * 120.50062 * 195.47715 * 25 23 22 42 42 H 1.08999 * 109.44104 * 208.60562 * 28 26 25 43 43 H 1.09003 * 109.41222 * 88.69391 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5786 -1.6371 1.1337 6 6 1.7948 -0.1774 2.4795 7 7 1.1185 0.9444 2.5980 8 14 2.4401 -1.0443 4.0032 9 1 1.3753 -1.9123 4.5671 10 1 3.6155 -1.8757 3.6391 11 1 2.8425 -0.0341 5.0144 12 7 2.0184 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.1689 1.0934 -1.8437 16 6 3.1893 -0.6987 -3.3614 17 8 2.7388 -1.7898 -3.6440 18 7 4.0472 -0.0857 -4.2010 19 6 4.3348 -0.6554 -5.4455 20 6 4.5115 0.1587 -6.5575 21 6 4.7964 -0.4000 -7.7892 22 6 4.9058 -1.7740 -7.9169 23 6 4.7281 -2.5939 -6.8031 24 6 4.4488 -2.0345 -5.5681 25 7 4.8404 -3.9838 -6.9498 26 6 5.4191 -4.4799 -8.0649 27 8 5.5000 -5.6793 -8.2269 28 6 5.9643 -3.5369 -9.1072 29 8 5.1864 -2.3371 -9.1234 30 1 -0.3634 0.5612 -0.8609 31 1 -0.3633 -1.0261 -0.0556 32 1 -0.3633 0.4649 0.9165 33 1 0.9548 1.3214 3.4766 34 1 0.7925 -2.1448 -2.0801 35 1 2.5023 -2.6059 -1.9006 36 1 1.4353 -2.5721 -0.4762 37 1 4.4650 0.7506 -3.9421 38 1 4.4255 1.2308 -6.4592 39 1 4.9327 0.2353 -8.6520 40 1 4.3159 -2.6683 -4.7037 41 1 4.5077 -4.5800 -6.2608 42 1 5.9178 -4.0127 -10.0867 43 1 7.0004 -3.2948 -8.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615250074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:24 Heat of formation + Delta-G solvation = -111.258771 kcal Electronic energy + Delta-G solvation = -29935.072269 eV Core-core repulsion = 25559.734758 eV Total energy + Delta-G solvation = -4375.337511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.60774 -41.97141 -40.31709 -39.60189 -38.47453 -37.51236 -36.57281 -35.32253 -34.63604 -31.56872 -31.19561 -30.71436 -28.73292 -27.82741 -27.32297 -26.21125 -24.37764 -24.28743 -22.55298 -20.91073 -20.89336 -19.94397 -19.34346 -18.67051 -18.40866 -18.27519 -17.89130 -17.43634 -17.00673 -16.92285 -16.72905 -16.21004 -16.03465 -15.68676 -15.54846 -15.26135 -14.97910 -14.72315 -14.44113 -14.30012 -14.24018 -14.01596 -13.74669 -13.58109 -13.32726 -12.98725 -12.81816 -12.70987 -12.64442 -12.47277 -12.31116 -12.28415 -12.14348 -12.08631 -11.37649 -11.22239 -10.89261 -10.59084 -10.39709 -9.60955 -9.52978 -8.84517 -8.18639 -6.33801 -0.20474 0.06840 0.47601 1.15366 1.30103 1.42031 1.43930 1.53816 1.65953 2.09462 2.23515 2.38680 2.59854 2.62726 2.91671 3.11675 3.28378 3.58993 4.00819 4.06479 4.09329 4.14323 4.33470 4.44319 4.60935 4.68482 4.68884 4.71094 4.85687 4.88763 4.97562 5.02870 5.13717 5.22607 5.36886 5.37738 5.39158 5.55135 5.61028 5.70046 5.84217 6.00047 6.07538 6.20026 6.47022 6.61905 6.66234 6.74681 6.98539 7.36853 8.87421 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.002263 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.093368 B =12370.243304 C =13126.163513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.027 0.973 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.270 1.270 11 H -0.284 1.284 12 N -0.563 5.563 13 C 0.087 3.913 14 C 0.487 3.513 15 O -0.562 6.562 16 C 0.519 3.481 17 O -0.506 6.506 18 N -0.634 5.634 19 C 0.137 3.863 20 C -0.113 4.113 21 C -0.078 4.078 22 C 0.059 3.941 23 C 0.100 3.900 24 C -0.131 4.131 25 N -0.658 5.658 26 C 0.487 3.513 27 O -0.551 6.551 28 C 0.054 3.946 29 O -0.304 6.304 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.432 0.568 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.135 0.865 41 H 0.418 0.582 42 H 0.169 0.831 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 -3.805 -23.102 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.045 0.955 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.195 1.195 11 H -0.210 1.210 12 N -0.293 5.293 13 C -0.055 4.055 14 C 0.269 3.731 15 O -0.442 6.442 16 C 0.302 3.698 17 O -0.381 6.381 18 N -0.282 5.282 19 C 0.043 3.957 20 C -0.134 4.134 21 C -0.097 4.097 22 C 0.012 3.988 23 C 0.004 3.996 24 C -0.154 4.154 25 N -0.304 5.304 26 C 0.276 3.724 27 O -0.429 6.429 28 C -0.024 4.024 29 O -0.218 6.218 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.272 0.728 38 H 0.186 0.814 39 H 0.194 0.806 40 H 0.153 0.847 41 H 0.257 0.743 42 H 0.186 0.814 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.091 -4.406 -23.403 25.490 hybrid contribution 0.055 -0.435 2.047 2.094 sum 9.146 -4.841 -21.355 23.731 Atomic orbital electron populations 1.21873 0.96660 1.00102 1.00359 1.18813 0.91845 0.92887 0.80696 0.95464 1.21510 1.36424 1.08960 0.91053 0.92001 1.25682 0.95027 0.95529 1.01854 1.70029 1.40296 1.20130 1.24827 0.85462 0.78763 0.78194 0.78728 1.19611 1.19482 1.20985 1.48230 1.46171 1.13518 1.21416 1.22022 1.01825 0.79920 1.01743 1.20217 0.81045 0.86481 0.85351 1.90710 1.55572 1.19993 1.77929 1.20100 0.79457 0.85396 0.84868 1.90705 1.53708 1.19295 1.74432 1.43037 1.42961 1.27347 1.14834 1.17604 1.01252 0.91738 0.85086 1.21125 1.01420 1.01514 0.89333 1.20621 0.99802 0.90656 0.98629 1.18824 1.03978 0.92766 0.83193 1.17827 1.04647 0.82734 0.94371 1.20607 1.03687 0.94785 0.96279 1.43824 1.58341 1.05762 1.22523 1.22195 0.77081 0.90018 0.83097 1.90806 1.57026 1.17107 1.77954 1.23438 0.96735 0.81704 1.00507 1.86267 1.70035 1.39809 1.25686 0.95545 0.93294 0.91549 0.92465 0.91853 0.89557 0.90993 0.72763 0.81409 0.80639 0.84720 0.74280 0.81392 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 9.10 71.98 0.66 -5.43 16 2 C 0.26 12.95 2.53 44.24 0.11 13.06 16 3 H 0.03 1.60 6.91 -2.39 -0.02 1.58 16 4 C -0.54 -28.56 7.98 25.60 0.20 -28.35 16 5 H 0.06 3.19 7.23 -2.91 -0.02 3.17 16 6 C 0.02 1.03 5.32 84.65 0.45 1.48 16 7 N -0.91 -51.14 11.69 21.45 0.25 -50.89 16 8 Si 0.96 42.09 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.56 -23.73 2.75 -828.51 -2.28 -26.01 16 13 C 0.09 3.04 8.10 127.77 1.03 4.08 16 14 C 0.49 19.21 7.72 87.24 0.67 19.88 16 15 O -0.56 -25.01 15.84 -3.30 -0.05 -25.06 16 16 C 0.52 15.94 7.54 87.23 0.66 16.60 16 17 O -0.51 -15.89 10.94 -3.37 -0.04 -15.92 16 18 N -0.63 -14.69 5.31 -304.73 -1.62 -16.31 16 19 C 0.14 2.70 6.25 38.19 0.24 2.94 16 20 C -0.11 -1.50 9.96 22.43 0.22 -1.28 16 21 C -0.08 -0.92 9.99 22.31 0.22 -0.69 16 22 C 0.06 0.93 6.44 22.60 0.15 1.08 16 23 C 0.10 1.88 6.54 38.13 0.25 2.13 16 24 C -0.13 -2.77 8.58 22.48 0.19 -2.58 16 25 N -0.66 -12.37 5.47 -302.73 -1.66 -14.02 16 26 C 0.49 9.15 7.94 87.63 0.70 9.84 16 27 O -0.55 -14.13 17.95 -3.08 -0.06 -14.18 16 28 C 0.05 0.58 7.17 71.25 0.51 1.09 16 29 O -0.30 -4.29 10.45 -94.31 -0.99 -5.27 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 32 H 0.07 3.39 6.43 -2.38 -0.02 3.37 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.06 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.09 2.80 5.95 -2.38 -0.01 2.78 16 36 H 0.07 2.59 7.01 -2.39 -0.02 2.57 16 37 H 0.43 8.79 8.33 -92.71 -0.77 8.01 16 38 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.14 3.23 6.40 -2.91 -0.02 3.21 16 41 H 0.42 7.57 8.89 -92.71 -0.82 6.75 16 42 H 0.17 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.16 364.12 1.37 -68.79 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.49 Total: 20.91 kcal Atomic # 6 Polarization: 27.59 SS G_CDS: 6.27 Total: 33.86 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -5.30 Total: -107.23 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -1.13 Total: -60.44 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.16 1.37 -68.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615250074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.468 kcal (2) G-P(sol) polarization free energy of solvation -70.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds