Wall clock time and date at job start Wed Apr 1 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.36815 * 2 1 4 4 C 1.50688 * 109.37687 * 240.34961 * 2 1 3 5 5 O 1.21293 * 120.31437 * 24.80786 * 4 2 1 6 6 N 1.35151 * 119.36442 * 204.82800 * 4 2 1 7 7 C 1.40363 * 118.50865 * 0.72839 * 6 4 2 8 8 C 1.38006 * 120.32192 * 198.27540 * 7 6 4 9 9 C 1.39887 * 119.76322 * 179.77304 * 8 7 6 10 10 C 1.47389 * 120.08327 * 180.02562 * 9 8 7 11 11 O 1.21516 * 120.00192 * 0.02562 * 10 9 8 12 12 O 1.34766 * 119.99885 * 180.02562 * 10 9 8 13 13 C 1.45200 * 117.00302 * 179.97438 * 12 10 9 14 14 C 1.50690 * 109.47093 * 179.97438 * 13 12 10 15 15 O 1.21291 * 120.00338 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00069 * 179.97438 * 14 13 12 17 17 C 1.37092 * 120.00448 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99821 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00368 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99806 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00277 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46999 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47242 * 120.00222 * 21 19 17 24 24 H 1.48501 * 109.47213 * 240.00522 * 21 19 17 25 25 C 1.39831 * 119.82491 * 0.02562 * 9 8 7 26 26 C 1.37661 * 120.14587 * 0.31564 * 25 9 8 27 27 C 1.39126 * 120.17990 * 359.49303 * 26 25 9 28 28 N 1.39045 * 119.98192 * 180.10550 * 27 26 25 29 29 C 1.46898 * 110.99753 * 19.69606 * 28 27 26 30 30 H 1.09005 * 109.47474 * 300.23058 * 1 2 3 31 31 H 1.08997 * 109.47258 * 60.23811 * 1 2 3 32 32 H 1.09005 * 109.47031 * 180.23927 * 1 2 3 33 33 H 0.97002 * 120.74507 * 180.70461 * 6 4 2 34 34 H 1.07997 * 120.11217 * 359.75814 * 8 7 6 35 35 H 1.08999 * 109.47014 * 300.00490 * 13 12 10 36 36 H 1.08997 * 109.46470 * 60.00084 * 13 12 10 37 37 H 0.97005 * 119.99576 * 0.02562 * 16 14 13 38 38 H 0.96995 * 119.99946 * 179.97438 * 20 19 17 39 39 H 1.08004 * 119.92236 * 180.08551 * 25 9 8 40 40 H 1.07999 * 119.90615 * 179.75134 * 26 25 9 41 41 H 1.09003 * 109.47507 * 56.05206 * 29 28 27 42 42 H 1.08998 * 109.47243 * 176.04980 * 29 28 27 43 43 H 1.09001 * 109.47386 * 296.04690 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0299 -0.7032 -1.2354 5 8 1.3364 -0.7631 -2.2287 6 7 3.2583 -1.2669 -1.2258 7 6 4.0221 -1.1887 -0.0508 8 6 5.3854 -1.3992 -0.0908 9 6 6.1361 -1.3137 1.0865 10 6 7.5926 -1.5367 1.0519 11 8 8.1430 -1.7946 -0.0004 12 8 8.3141 -1.4544 2.1872 13 6 9.7433 -1.6863 2.0784 14 6 10.3788 -1.5530 3.4382 15 8 9.6945 -1.2890 4.4042 16 7 11.7075 -1.7281 3.5812 17 6 12.2858 -1.6063 4.8182 18 1 11.6765 -1.3704 5.6783 19 6 13.6557 -1.7862 4.9656 20 7 14.3970 -2.0727 3.9191 21 14 14.4435 -1.6210 6.6512 22 1 13.3992 -1.2969 7.6561 23 1 15.1020 -2.9006 7.0174 24 1 15.4555 -0.5346 6.6203 25 6 5.5009 -1.0163 2.2962 26 6 4.1397 -0.8142 2.3310 27 6 3.3906 -0.8946 1.1613 28 7 2.0162 -0.6876 1.2008 29 6 1.6281 0.0393 2.4169 30 1 -0.3634 0.5174 0.8879 31 1 -0.3633 0.5101 -0.8921 32 1 -0.3633 -1.0277 0.0043 33 1 3.6041 -1.7157 -2.0132 34 1 5.8709 -1.6293 -1.0276 35 1 9.9201 -2.6897 1.6910 36 1 10.1796 -0.9529 1.4003 37 1 12.2547 -1.9395 2.8087 38 1 15.3534 -2.1980 4.0218 39 1 6.0792 -0.9485 3.2059 40 1 3.6525 -0.5887 3.2681 41 1 2.1811 0.9769 2.4719 42 1 0.5589 0.2493 2.3890 43 1 1.8561 -0.5690 3.2922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750567520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:19 Heat of formation + Delta-G solvation = -106.938217 kcal Electronic energy + Delta-G solvation = -29165.074413 eV Core-core repulsion = 24789.924255 eV Total energy + Delta-G solvation = -4375.150158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -41.93719 -40.35110 -39.13244 -38.18141 -37.40463 -36.07198 -35.59924 -34.01988 -32.42871 -31.40202 -30.30361 -29.81321 -28.45549 -27.55022 -24.84518 -24.10743 -23.66776 -22.81386 -21.45626 -19.60602 -19.47326 -18.97635 -18.29097 -18.06557 -17.28783 -16.84101 -16.53195 -16.40116 -16.31154 -15.60789 -15.00048 -14.86665 -14.73388 -14.63833 -14.59322 -14.24063 -14.09295 -13.92798 -13.49163 -13.12502 -13.07404 -12.93781 -12.50139 -12.40948 -12.32306 -12.06058 -12.01686 -11.64172 -11.52628 -11.17166 -11.10196 -10.69082 -10.49792 -10.48238 -10.44205 -10.40624 -10.31493 -9.63479 -8.97332 -8.54762 -8.10363 -8.09617 -6.51828 -3.93832 0.32979 0.82208 1.85976 2.37993 2.47128 2.71596 2.97884 3.10348 3.22730 3.29908 3.45894 3.62717 3.71890 4.08021 4.09582 4.24898 4.42970 4.51828 4.58405 4.75814 4.84781 4.87313 4.91866 4.98042 5.12086 5.13394 5.16755 5.29150 5.33260 5.35316 5.52999 5.64079 5.67844 5.73507 5.98905 6.03890 6.09484 6.11303 6.21073 6.41740 6.56008 6.69515 7.45886 7.46257 7.79377 7.93777 8.46334 9.05284 9.37461 9.86973 10.65428 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.028585 B = 0.001839 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.297718 B =15224.344331 C =16138.271187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.089 0.911 4 C 0.529 3.471 5 O -0.513 6.513 6 N -0.659 5.659 7 C 0.100 3.900 8 C -0.057 4.057 9 C -0.119 4.119 10 C 0.507 3.493 11 O -0.512 6.512 12 O -0.320 6.320 13 C 0.062 3.938 14 C 0.439 3.561 15 O -0.576 6.576 16 N -0.553 5.553 17 C -0.302 4.302 18 H 0.107 0.893 19 C 0.024 3.976 20 N -0.896 5.896 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.041 4.041 26 C -0.149 4.149 27 C 0.115 3.885 28 N -0.482 5.482 29 C 0.014 3.986 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.417 0.583 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.273 0.727 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.633 4.228 -7.367 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 H 0.106 0.894 4 C 0.315 3.685 5 O -0.386 6.386 6 N -0.306 5.306 7 C 0.003 3.997 8 C -0.078 4.078 9 C -0.122 4.122 10 C 0.352 3.648 11 O -0.403 6.403 12 O -0.234 6.234 13 C -0.016 4.016 14 C 0.224 3.776 15 O -0.461 6.461 16 N -0.190 5.190 17 C -0.431 4.431 18 H 0.125 0.875 19 C -0.178 4.178 20 N -0.537 5.537 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.060 4.060 26 C -0.170 4.170 27 C 0.014 3.986 28 N -0.197 5.197 29 C -0.131 4.131 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.257 0.743 34 H 0.164 0.836 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.171 0.829 40 H 0.163 0.837 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.535 3.935 -7.467 26.894 hybrid contribution 1.638 0.167 -0.209 1.660 sum -23.897 4.103 -7.677 25.432 Atomic orbital electron populations 1.21776 0.90083 1.04147 1.03306 1.21838 0.98930 0.97023 0.86578 0.89384 1.20597 0.80510 0.77923 0.89447 1.90787 1.55385 1.57687 1.34774 1.43713 1.16692 1.55977 1.14178 1.17170 0.90573 1.07041 0.84933 1.20613 0.90346 0.98015 0.98824 1.18787 0.89896 1.09084 0.94407 1.20978 0.88002 0.73770 0.82030 1.90834 1.72586 1.45101 1.31731 1.86584 1.21729 1.80955 1.34159 1.22775 0.76858 1.02926 0.99026 1.19295 0.83548 0.86070 0.88733 1.90554 1.62027 1.53351 1.40122 1.41712 1.05052 1.61112 1.11097 1.19774 0.91240 1.45507 0.86574 0.87531 1.25321 0.96200 0.96822 0.99473 1.69619 1.06965 1.47421 1.29693 0.85739 0.79011 0.77881 0.81353 1.19081 1.20630 1.20634 1.21516 0.94069 0.92432 0.98012 1.20970 0.93602 1.05308 0.97150 1.18851 0.87415 0.99677 0.92696 1.58279 1.09824 1.47464 1.04101 1.22746 1.02497 0.97182 0.90670 0.90920 0.90137 0.90930 0.74332 0.83552 0.89391 0.89416 0.77142 0.91665 0.82914 0.83674 0.93041 0.89535 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.63 37.16 0.32 -0.45 16 2 C 0.07 0.47 2.55 -69.00 -0.18 0.30 16 3 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 4 C 0.53 5.15 7.66 -10.82 -0.08 5.06 16 5 O -0.51 -6.32 16.95 5.55 0.09 -6.23 16 6 N -0.66 -5.86 5.49 -9.65 -0.05 -5.92 16 7 C 0.10 0.95 6.49 -83.45 -0.54 0.41 16 8 C -0.06 -0.59 9.48 -39.05 -0.37 -0.96 16 9 C -0.12 -1.46 5.88 -104.96 -0.62 -2.08 16 10 C 0.51 7.90 7.89 34.46 0.27 8.17 16 11 O -0.51 -8.76 16.13 -19.28 -0.31 -9.07 16 12 O -0.32 -5.71 8.99 -47.36 -0.43 -6.14 16 13 C 0.06 1.14 5.95 36.00 0.21 1.35 16 14 C 0.44 10.28 7.86 -10.99 -0.09 10.20 16 15 O -0.58 -15.48 16.08 -14.11 -0.23 -15.71 16 16 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 17 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 18 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 19 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 21 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.04 -0.44 9.60 -39.20 -0.38 -0.81 16 26 C -0.15 -1.26 8.93 -39.46 -0.35 -1.61 16 27 C 0.12 1.02 5.91 -83.67 -0.49 0.52 16 28 N -0.48 -3.52 4.65 -172.71 -0.80 -4.32 16 29 C 0.01 0.06 8.30 60.06 0.50 0.56 16 30 H 0.07 0.25 6.31 -51.93 -0.33 -0.08 16 31 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.42 3.11 8.90 -40.82 -0.36 2.75 16 34 H 0.15 1.43 7.65 -52.49 -0.40 1.03 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.15 1.72 7.60 -52.48 -0.40 1.32 16 40 H 0.15 0.87 5.95 -52.49 -0.31 0.55 16 41 H 0.05 0.20 7.98 -51.93 -0.41 -0.21 16 42 H 0.09 0.25 6.01 -51.93 -0.31 -0.06 16 43 H 0.09 0.34 6.77 -51.93 -0.35 -0.01 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -33.94 368.75 -7.37 -41.31 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.81 Total: 9.05 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: -2.03 Total: 12.88 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.19 Total: -47.03 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.87 Total: -37.14 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.94 -7.37 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750567520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.630 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds