Wall clock time and date at job start Wed Apr 1 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 O 1.45199 * 109.46863 * 120.00562 * 2 1 3 5 5 C 1.34236 * 116.99742 * 269.99675 * 4 2 1 6 6 O 1.20820 * 119.99846 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46843 * 179.97438 * 7 5 4 9 9 C 1.50708 * 109.46641 * 180.02562 * 8 7 5 10 10 H 1.07993 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99406 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99697 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47047 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46781 * 119.99928 * 13 11 9 16 16 H 1.48499 * 109.47533 * 239.99971 * 13 11 9 17 17 C 1.50706 * 109.46950 * 240.00175 * 2 1 3 18 18 O 1.21293 * 119.99960 * 245.00123 * 17 2 1 19 19 N 1.34771 * 120.00100 * 65.00070 * 17 2 1 20 20 C 1.40096 * 119.99892 * 174.72792 * 19 17 2 21 21 C 1.39267 * 119.86027 * 326.37282 * 20 19 17 22 22 C 1.36610 * 120.57400 * 179.71795 * 21 20 19 23 23 C 1.39711 * 119.98045 * 0.55449 * 22 21 20 24 24 N 1.36018 * 133.37101 * 179.72332 * 23 22 21 25 25 C 1.30706 * 109.62775 * 180.02562 * 24 23 22 26 26 O 1.35305 * 125.03232 * 180.02562 * 25 24 23 27 27 N 1.36465 * 109.93521 * 359.97438 * 25 24 23 28 28 H 0.96995 * 126.36082 * 180.02562 * 27 25 24 29 29 C 1.38432 * 107.26662 * 0.02562 * 27 25 24 30 30 C 1.38542 * 119.85648 * 146.64850 * 20 19 17 31 31 H 1.08998 * 109.46955 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.47389 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46730 * 60.00011 * 1 2 3 34 34 H 1.08996 * 109.47244 * 300.00248 * 7 5 4 35 35 H 1.09000 * 109.47196 * 59.99905 * 7 5 4 36 36 H 1.08997 * 109.46911 * 300.00069 * 8 7 5 37 37 H 1.09000 * 109.47078 * 60.00497 * 8 7 5 38 38 H 0.97003 * 120.00072 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00243 * 354.72689 * 19 17 2 40 40 H 1.08004 * 119.71649 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.00943 * 180.28479 * 22 21 20 42 42 H 0.96693 * 114.00591 * 90.01998 * 26 25 24 43 43 H 1.07993 * 120.18037 * 359.97438 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2171 0.0639 2.2811 6 8 1.9974 1.2515 2.2506 7 6 2.7192 -0.5772 3.5491 8 6 2.8644 0.4890 4.6368 9 6 3.3671 -0.1521 5.9047 10 1 3.5638 -1.2136 5.9318 11 6 3.5759 0.6168 7.0300 12 7 3.3358 1.9094 6.9971 13 14 4.1983 -0.1779 8.6017 14 1 4.3884 -1.6336 8.3787 15 1 5.4940 0.4367 8.9875 16 1 3.2081 0.0318 9.6883 17 6 2.0323 -0.7104 -1.2305 18 8 2.6530 -1.7468 -1.1216 19 7 1.7919 -0.1942 -2.4520 20 6 2.3516 -0.7930 -3.5881 21 6 3.6069 -1.3910 -3.5095 22 6 4.1640 -1.9842 -4.6068 23 6 3.4783 -1.9841 -5.8241 24 7 3.7674 -2.4756 -7.0590 25 6 2.7826 -2.2134 -7.8775 26 8 2.7449 -2.5623 -9.1842 27 7 1.7977 -1.5366 -7.2186 28 1 0.9609 -1.2256 -7.5980 29 6 2.2147 -1.3767 -5.9084 30 6 1.6565 -0.7828 -4.7865 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 2.0104 -1.3375 3.8772 35 1 3.6883 -1.0402 3.3631 36 1 3.5734 1.2489 4.3083 37 1 1.8954 0.9523 4.8230 38 1 3.4830 2.4504 7.7886 39 1 1.2313 0.5920 -2.5446 40 1 4.1429 -1.3894 -2.5719 41 1 5.1360 -2.4493 -4.5344 42 1 2.3505 -3.4297 -9.3486 43 1 0.6849 -0.3150 -4.8466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:10:49 Heat of formation + Delta-G solvation = -85.455384 kcal Electronic energy + Delta-G solvation = -28548.168026 eV Core-core repulsion = 24173.949433 eV Total energy + Delta-G solvation = -4374.218593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.57348 -40.94191 -39.89697 -38.48598 -37.12076 -36.19294 -34.71386 -33.62900 -33.50034 -32.14376 -31.00387 -30.37238 -28.41574 -26.24582 -25.03947 -23.57594 -23.16544 -22.14058 -21.93474 -20.76635 -19.89506 -19.53447 -18.52475 -17.90311 -17.79817 -17.48059 -16.56139 -16.35916 -16.13442 -15.73209 -15.49571 -15.22220 -14.77154 -14.55706 -14.47474 -14.36852 -14.15716 -13.65126 -13.52235 -13.10303 -12.70133 -12.58710 -12.41377 -12.34346 -12.21232 -11.97281 -11.74181 -11.29966 -11.23910 -10.98721 -10.75031 -10.62661 -10.50347 -10.26232 -10.08321 -10.05953 -9.96491 -9.60282 -9.18242 -8.79783 -8.39449 -8.15501 -6.03258 -4.07863 0.38036 1.07738 1.76937 2.01602 2.24539 2.37491 2.70347 3.16180 3.30621 3.33880 3.38369 3.42439 3.46198 4.08094 4.16254 4.43584 4.57172 4.62045 4.74814 4.75726 4.82354 4.90116 5.03961 5.07266 5.32649 5.42379 5.52237 5.55317 5.73553 5.74356 5.82450 5.93010 6.09821 6.12191 6.17501 6.22714 6.47585 6.52831 6.82647 6.89923 7.09298 7.30493 7.64390 7.69672 7.70095 7.95732 8.16297 8.34638 8.99270 9.56507 11.07755 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.001589 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.517504 B =17615.052318 C =18180.786122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 H 0.114 0.886 4 O -0.336 6.336 5 C 0.459 3.541 6 O -0.503 6.503 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.520 3.480 18 O -0.487 6.487 19 N -0.671 5.671 20 C 0.181 3.819 21 C -0.121 4.121 22 C -0.040 4.040 23 C 0.042 3.958 24 N -0.479 5.479 25 C 0.445 3.555 26 O -0.443 6.443 27 N -0.602 5.602 28 H 0.423 0.577 29 C 0.078 3.922 30 C -0.145 4.145 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.413 0.587 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.410 0.590 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 -5.973 -31.400 32.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 H 0.131 0.869 4 O -0.253 6.253 5 C 0.303 3.697 6 O -0.390 6.390 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.307 3.693 18 O -0.358 6.358 19 N -0.319 5.319 20 C 0.086 3.914 21 C -0.143 4.143 22 C -0.060 4.060 23 C -0.076 4.076 24 N -0.210 5.210 25 C 0.140 3.860 26 O -0.245 6.245 27 N -0.227 5.227 28 H 0.262 0.738 29 C -0.032 4.032 30 C -0.169 4.169 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.250 0.750 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.268 0.732 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.584 -6.144 -31.528 32.789 hybrid contribution -1.526 0.365 0.512 1.651 sum -8.111 -5.779 -31.016 32.575 Atomic orbital electron populations 1.22168 0.91854 1.04077 1.04195 1.22235 0.96011 0.97753 0.83118 0.86855 1.86751 1.77481 1.41931 1.19184 1.24993 0.73482 0.86389 0.84848 1.90626 1.47802 1.16858 1.83672 1.21811 1.02010 1.02069 0.88065 1.19044 0.98587 0.92436 0.90364 1.21196 1.44926 0.94835 0.95664 0.92172 1.25013 0.95452 0.94812 0.99015 1.69998 1.48387 1.05035 1.29392 0.86484 0.78484 0.79558 0.83159 1.19606 1.20966 1.20978 1.20507 0.79802 0.85231 0.83809 1.90779 1.37546 1.21599 1.85904 1.43423 1.52030 1.32009 1.04408 1.17253 0.91984 0.96695 0.85497 1.20768 0.93930 0.99881 0.99699 1.19939 0.99742 0.97819 0.88505 1.18813 0.93633 1.02529 0.92589 1.70674 1.25197 1.24755 1.00367 1.20309 0.85222 0.95522 0.84903 1.84848 1.83015 1.41667 1.14921 1.43357 1.19804 1.51118 1.08426 0.73825 1.18150 0.97019 1.03498 0.84509 1.19381 1.00609 1.06904 0.89999 0.89949 0.90752 0.90583 0.88695 0.88632 0.95535 0.95531 0.92909 0.74990 0.83590 0.84341 0.73207 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.49 37.16 0.35 -1.19 16 2 C 0.07 0.83 2.98 -27.88 -0.08 0.75 16 3 H 0.11 1.34 7.16 -51.93 -0.37 0.97 16 4 O -0.34 -5.51 9.42 -45.90 -0.43 -5.94 16 5 C 0.46 8.68 7.93 36.00 0.29 8.97 16 6 O -0.50 -10.59 15.20 -18.75 -0.28 -10.88 16 7 C -0.10 -2.06 5.75 -27.88 -0.16 -2.22 16 8 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 9 C -0.53 -14.62 9.11 -34.43 -0.31 -14.93 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 13 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.52 6.12 6.91 -10.98 -0.08 6.05 16 18 O -0.49 -7.55 14.20 -14.06 -0.20 -7.75 16 19 N -0.67 -5.47 5.31 -9.80 -0.05 -5.52 16 20 C 0.18 1.67 6.27 -83.58 -0.52 1.15 16 21 C -0.12 -1.29 8.58 -39.79 -0.34 -1.63 16 22 C -0.04 -0.42 10.04 -39.62 -0.40 -0.81 16 23 C 0.04 0.46 7.22 -84.63 -0.61 -0.15 16 24 N -0.48 -5.35 11.31 -12.20 -0.14 -5.49 16 25 C 0.45 3.59 9.39 -88.89 -0.84 2.76 16 26 O -0.44 -2.32 13.63 -17.61 -0.24 -2.56 16 27 N -0.60 -3.76 6.27 -11.90 -0.07 -3.84 16 28 H 0.42 1.15 8.96 -40.82 -0.37 0.79 16 29 C 0.08 0.68 7.30 -83.89 -0.61 0.06 16 30 C -0.14 -1.08 9.98 -39.31 -0.39 -1.47 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.43 7.76 -51.93 -0.40 0.02 16 34 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 35 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.41 1.90 8.42 -40.82 -0.34 1.56 16 40 H 0.15 1.73 6.41 -52.48 -0.34 1.39 16 41 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.41 -0.08 9.06 45.56 0.41 0.34 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -38.16 378.85 -8.25 -46.41 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -4.33 Total: -0.15 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -3.92 Total: -0.37 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.47 Total: -40.79 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.16 Total: -27.13 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.16 -8.25 -46.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.042 kcal (2) G-P(sol) polarization free energy of solvation -38.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds