Wall clock time and date at job start Wed Apr 1 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 O 1.45199 * 109.46863 * 120.00562 * 2 1 3 5 5 C 1.34236 * 116.99742 * 269.99675 * 4 2 1 6 6 O 1.20820 * 119.99846 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46843 * 179.97438 * 7 5 4 9 9 C 1.50708 * 109.46641 * 180.02562 * 8 7 5 10 10 H 1.07993 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99406 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99697 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47047 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46781 * 119.99928 * 13 11 9 16 16 H 1.48499 * 109.47533 * 239.99971 * 13 11 9 17 17 C 1.50706 * 109.46950 * 240.00175 * 2 1 3 18 18 O 1.21293 * 119.99960 * 245.00123 * 17 2 1 19 19 N 1.34771 * 120.00100 * 65.00070 * 17 2 1 20 20 C 1.40096 * 119.99892 * 174.72792 * 19 17 2 21 21 C 1.39267 * 119.86027 * 326.37282 * 20 19 17 22 22 C 1.36610 * 120.57400 * 179.71795 * 21 20 19 23 23 C 1.39711 * 119.98045 * 0.55449 * 22 21 20 24 24 N 1.36018 * 133.37101 * 179.72332 * 23 22 21 25 25 C 1.30706 * 109.62775 * 180.02562 * 24 23 22 26 26 O 1.35305 * 125.03232 * 180.02562 * 25 24 23 27 27 N 1.36465 * 109.93521 * 359.97438 * 25 24 23 28 28 H 0.96995 * 126.36082 * 180.02562 * 27 25 24 29 29 C 1.38432 * 107.26662 * 0.02562 * 27 25 24 30 30 C 1.38542 * 119.85648 * 146.64850 * 20 19 17 31 31 H 1.08998 * 109.46955 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.47389 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46730 * 60.00011 * 1 2 3 34 34 H 1.08996 * 109.47244 * 300.00248 * 7 5 4 35 35 H 1.09000 * 109.47196 * 59.99905 * 7 5 4 36 36 H 1.08997 * 109.46911 * 300.00069 * 8 7 5 37 37 H 1.09000 * 109.47078 * 60.00497 * 8 7 5 38 38 H 0.97003 * 120.00072 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00243 * 354.72689 * 19 17 2 40 40 H 1.08004 * 119.71649 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.00943 * 180.28479 * 22 21 20 42 42 H 0.96693 * 114.00591 * 90.01998 * 26 25 24 43 43 H 1.07993 * 120.18037 * 359.97438 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2171 0.0639 2.2811 6 8 1.9974 1.2515 2.2506 7 6 2.7192 -0.5772 3.5491 8 6 2.8644 0.4890 4.6368 9 6 3.3671 -0.1521 5.9047 10 1 3.5638 -1.2136 5.9318 11 6 3.5759 0.6168 7.0300 12 7 3.3358 1.9094 6.9971 13 14 4.1983 -0.1779 8.6017 14 1 4.3884 -1.6336 8.3787 15 1 5.4940 0.4367 8.9875 16 1 3.2081 0.0318 9.6883 17 6 2.0323 -0.7104 -1.2305 18 8 2.6530 -1.7468 -1.1216 19 7 1.7919 -0.1942 -2.4520 20 6 2.3516 -0.7930 -3.5881 21 6 3.6069 -1.3910 -3.5095 22 6 4.1640 -1.9842 -4.6068 23 6 3.4783 -1.9841 -5.8241 24 7 3.7674 -2.4756 -7.0590 25 6 2.7826 -2.2134 -7.8775 26 8 2.7449 -2.5623 -9.1842 27 7 1.7977 -1.5366 -7.2186 28 1 0.9609 -1.2256 -7.5980 29 6 2.2147 -1.3767 -5.9084 30 6 1.6565 -0.7828 -4.7865 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 2.0104 -1.3375 3.8772 35 1 3.6883 -1.0402 3.3631 36 1 3.5734 1.2489 4.3083 37 1 1.8954 0.9523 4.8230 38 1 3.4830 2.4504 7.7886 39 1 1.2313 0.5920 -2.5446 40 1 4.1429 -1.3894 -2.5719 41 1 5.1360 -2.4493 -4.5344 42 1 2.3505 -3.4297 -9.3486 43 1 0.6849 -0.3150 -4.8466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:10:48 Heat of formation + Delta-G solvation = -115.862990 kcal Electronic energy + Delta-G solvation = -28549.486598 eV Core-core repulsion = 24173.949433 eV Total energy + Delta-G solvation = -4375.537165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.21425 -42.02443 -41.09030 -39.13102 -37.94926 -37.41076 -35.64521 -35.50776 -34.20169 -33.39604 -32.64549 -31.04355 -29.13638 -28.09946 -26.05246 -24.45823 -24.23594 -23.32779 -22.66016 -21.75297 -21.35782 -20.09831 -19.37932 -19.13202 -18.64000 -18.41178 -18.16774 -17.48083 -17.12040 -16.90575 -16.54947 -16.47012 -16.07674 -15.64617 -15.28858 -15.13835 -14.97919 -14.90854 -14.39196 -14.28293 -14.25343 -13.86471 -13.43076 -13.26833 -13.19955 -12.98232 -12.86364 -12.73586 -12.62792 -12.48366 -12.02822 -11.98459 -11.92297 -11.73866 -11.48006 -11.26230 -11.18917 -11.06278 -10.87120 -10.57084 -9.47031 -8.85853 -8.19254 -6.32186 -0.28111 0.34806 1.04399 1.20357 1.20837 1.41017 1.44806 1.45523 1.58817 1.66649 2.12843 2.44543 2.72615 2.79113 3.14900 3.32091 3.50018 3.71200 3.82705 3.90859 4.01263 4.10287 4.15555 4.29396 4.35899 4.41309 4.44930 4.61793 4.63785 4.89426 4.90934 5.01983 5.05014 5.07595 5.26411 5.29094 5.39310 5.48585 5.57121 5.75683 5.81836 5.93132 6.14634 6.20451 6.66034 6.70909 6.73888 6.85977 6.90470 7.37831 8.93323 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.001589 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.517504 B =17615.052318 C =18180.786122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.060 3.940 3 H 0.119 0.881 4 O -0.341 6.341 5 C 0.470 3.530 6 O -0.531 6.531 7 C -0.096 4.096 8 C 0.039 3.961 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.001 4.001 12 N -0.933 5.933 13 Si 0.971 3.029 14 H -0.256 1.256 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.526 3.474 18 O -0.531 6.531 19 N -0.647 5.647 20 C 0.163 3.837 21 C -0.131 4.131 22 C -0.056 4.056 23 C 0.021 3.979 24 N -0.526 5.526 25 C 0.459 3.541 26 O -0.443 6.443 27 N -0.583 5.583 28 H 0.442 0.558 29 C 0.074 3.926 30 C -0.119 4.119 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.110 0.890 36 H -0.008 1.008 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.433 0.567 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.434 0.566 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 -6.710 -33.126 35.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 H 0.136 0.864 4 O -0.257 6.257 5 C 0.315 3.685 6 O -0.420 6.420 7 C -0.133 4.133 8 C 0.002 3.998 9 C -0.582 4.582 10 H 0.093 0.907 11 C -0.199 4.199 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.180 1.180 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.313 3.687 18 O -0.406 6.406 19 N -0.296 5.296 20 C 0.067 3.933 21 C -0.153 4.153 22 C -0.077 4.077 23 C -0.097 4.097 24 N -0.259 5.259 25 C 0.154 3.846 26 O -0.249 6.249 27 N -0.209 5.209 28 H 0.285 0.715 29 C -0.037 4.037 30 C -0.142 4.142 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.011 0.989 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.274 0.726 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.297 0.703 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.399 -6.887 -33.333 35.058 hybrid contribution -1.011 0.580 0.784 1.405 sum -9.411 -6.308 -32.549 34.464 Atomic orbital electron populations 1.22214 0.89206 1.04654 1.05713 1.22657 0.98100 0.97535 0.81561 0.86384 1.86670 1.77310 1.41929 1.19802 1.24482 0.72958 0.85741 0.85307 1.90615 1.49144 1.17930 1.84321 1.21536 1.03683 1.00578 0.87546 1.18807 0.95794 0.93075 0.92103 1.21671 1.44529 0.95645 0.96398 0.90738 1.26033 0.95578 0.95287 1.03011 1.70147 1.49729 1.06810 1.30613 0.85302 0.77708 0.79165 0.78262 1.17987 1.20663 1.20487 1.20382 0.79194 0.84596 0.84543 1.90775 1.39682 1.23596 1.86528 1.43097 1.51395 1.32116 1.02968 1.17284 0.91897 0.97752 0.86338 1.20675 0.94979 1.00768 0.98917 1.19940 1.00118 0.98700 0.88898 1.19006 0.94898 1.03176 0.92597 1.70616 1.27226 1.26912 1.01117 1.20368 0.84728 0.94210 0.85288 1.84818 1.83390 1.43566 1.13095 1.43216 1.20141 1.50253 1.07338 0.71532 1.18259 0.96379 1.03390 0.85681 1.19629 1.01387 1.04850 0.88367 0.91389 0.90614 0.86100 0.86616 0.87144 0.98925 0.98568 0.92746 0.72624 0.85550 0.84578 0.70286 0.81169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.49 71.98 0.68 -1.97 16 2 C 0.06 1.40 2.98 29.85 0.09 1.49 16 3 H 0.12 2.69 7.16 -2.39 -0.02 2.68 16 4 O -0.34 -11.09 9.42 -45.13 -0.43 -11.51 16 5 C 0.47 17.98 7.93 71.23 0.56 18.55 16 6 O -0.53 -22.91 15.20 21.98 0.33 -22.57 16 7 C -0.10 -3.90 5.75 29.85 0.17 -3.73 16 8 C 0.04 2.11 4.26 29.85 0.13 2.24 16 9 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 10 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 11 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 12 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 13 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 C 0.53 11.91 6.91 87.66 0.61 12.52 16 18 O -0.53 -16.66 14.20 15.68 0.22 -16.44 16 19 N -0.65 -9.18 5.31 -303.31 -1.61 -10.79 16 20 C 0.16 2.76 6.27 38.14 0.24 3.00 16 21 C -0.13 -2.90 8.58 22.14 0.19 -2.71 16 22 C -0.06 -1.24 10.04 22.25 0.22 -1.01 16 23 C 0.02 0.45 7.22 39.39 0.28 0.74 16 24 N -0.53 -11.54 11.31 -306.34 -3.46 -15.01 16 25 C 0.46 6.55 9.39 179.74 1.69 8.24 16 26 O -0.44 -3.57 13.63 -85.92 -1.17 -4.74 16 27 N -0.58 -5.63 6.27 -302.40 -1.89 -7.52 16 28 H 0.44 0.74 8.96 -92.71 -0.83 -0.09 16 29 C 0.07 1.11 7.30 38.74 0.28 1.40 16 30 C -0.12 -1.40 9.98 22.45 0.22 -1.18 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.12 0.88 7.76 -2.39 -0.02 0.86 16 34 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 35 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 36 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 37 H 0.00 -0.24 8.10 -2.39 -0.02 -0.26 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.43 2.47 8.42 -92.71 -0.78 1.69 16 40 H 0.13 3.24 6.41 -2.91 -0.02 3.22 16 41 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.43 -1.33 9.06 -74.06 -0.67 -2.00 16 43 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -86.57 378.85 -0.80 -87.38 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -1.17 Total: 4.66 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.07 Total: 7.81 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -6.68 Total: -90.35 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -1.04 Total: -55.27 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -86.57 -0.80 -87.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.488 kcal (2) G-P(sol) polarization free energy of solvation -86.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds