Wall clock time and date at job start Wed Apr 1 2020 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.27754 * 2 1 4 4 C 1.50684 * 109.36934 * 119.70261 * 2 1 3 5 5 O 1.21300 * 120.31231 * 265.20791 * 4 2 1 6 6 N 1.35147 * 119.37689 * 85.49394 * 4 2 1 7 7 C 1.40352 * 118.52058 * 0.20311 * 6 4 2 8 8 C 1.38013 * 120.38785 * 198.56541 * 7 6 4 9 9 C 1.39890 * 119.76129 * 179.97438 * 8 7 6 10 10 C 1.47419 * 120.08595 * 180.02562 * 9 8 7 11 11 O 1.21641 * 120.00034 * 19.23349 * 10 9 8 12 12 N 1.34775 * 119.99748 * 199.22319 * 10 9 8 13 13 C 1.36914 * 119.99612 * 180.32778 * 12 10 9 14 14 H 1.08003 * 119.99676 * 291.05191 * 13 12 10 15 15 C 1.39009 * 120.00038 * 111.05905 * 13 12 10 16 16 N 1.31386 * 120.00219 * 25.53800 * 15 13 12 17 17 Si 1.86800 * 119.99853 * 205.53530 * 15 13 12 18 18 H 1.48500 * 109.47305 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47190 * 120.00150 * 17 15 13 20 20 H 1.48506 * 109.47232 * 240.00152 * 17 15 13 21 21 C 1.46497 * 120.00482 * 0.32547 * 12 10 9 22 22 C 1.50700 * 109.46719 * 47.64298 * 21 12 10 23 23 O 1.20833 * 120.00137 * 359.97438 * 22 21 12 24 24 O 1.34231 * 119.99950 * 180.02562 * 22 21 12 25 25 C 1.39839 * 119.82406 * 0.02562 * 9 8 7 26 26 C 1.37669 * 120.14517 * 0.05654 * 25 9 8 27 27 C 1.39130 * 120.17872 * 0.02562 * 26 25 9 28 28 N 1.39080 * 119.98072 * 179.83980 * 27 26 25 29 29 C 1.46897 * 111.00034 * 19.39720 * 28 27 26 30 30 H 1.09002 * 109.47195 * 300.29645 * 1 2 3 31 31 H 1.09003 * 109.46861 * 60.29827 * 1 2 3 32 32 H 1.08998 * 109.46979 * 180.29772 * 1 2 3 33 33 H 0.97007 * 120.73605 * 180.45505 * 6 4 2 34 34 H 1.07997 * 120.12212 * 359.92245 * 8 7 6 35 35 H 0.97002 * 120.00141 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47630 * 167.64042 * 21 12 10 37 37 H 1.09002 * 109.47241 * 287.64754 * 21 12 10 38 38 H 0.96702 * 117.00249 * 180.02562 * 24 22 21 39 39 H 1.08004 * 119.92761 * 180.02562 * 25 9 8 40 40 H 1.07996 * 119.90872 * 180.02562 * 26 25 9 41 41 H 1.09005 * 109.46779 * 175.31633 * 29 28 27 42 42 H 1.08993 * 109.47444 * 295.32089 * 29 28 27 43 43 H 1.09001 * 109.46720 * 55.32741 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0289 0.0000 4 6 2.0298 -0.7044 1.2348 5 8 2.3154 -0.0698 2.2283 6 7 2.1624 -2.0493 1.2230 7 6 1.8310 -2.7451 0.0500 8 6 1.5801 -4.1016 0.0902 9 6 1.2504 -4.7820 -1.0868 10 6 0.9804 -6.2308 -1.0521 11 8 0.6981 -6.7718 0.0002 12 7 1.0461 -6.9559 -2.1862 13 6 0.7888 -8.3003 -2.1550 14 1 1.4771 -8.9705 -1.6617 15 6 -0.3584 -8.8025 -2.7585 16 7 -0.9208 -8.1469 -3.7485 17 14 -1.1003 -10.4097 -2.1618 18 1 -0.2842 -10.9466 -1.0434 19 1 -2.4879 -10.1696 -1.6906 20 1 -1.1189 -11.3904 -3.2769 21 6 1.3928 -6.3057 -3.4524 22 6 2.6052 -5.4330 -3.2534 23 8 3.1259 -5.3612 -2.1654 24 8 3.1060 -4.7347 -4.2845 25 6 1.1776 -4.0841 -2.2965 26 6 1.4307 -2.7313 -2.3305 27 6 1.7605 -2.0519 -1.1620 28 7 2.0186 -0.6858 -1.2016 29 6 1.4597 -0.0795 -2.4173 30 1 -0.3634 0.5184 0.8873 31 1 -0.3633 0.5092 -0.8927 32 1 -0.3633 -1.0276 0.0053 33 1 2.4761 -2.5235 2.0089 34 1 1.6388 -4.6361 1.0267 35 1 -1.7215 -8.4972 -4.1693 36 1 1.6111 -7.0651 -4.2031 37 1 0.5556 -5.6934 -3.7876 38 1 3.8849 -4.1893 -4.1084 39 1 0.9228 -4.6076 -3.2061 40 1 1.3730 -2.1960 -3.2667 41 1 1.6027 1.0006 -2.3833 42 1 1.9669 -0.4859 -3.2923 43 1 0.3946 -0.3032 -2.4781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828144129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:14 Heat of formation + Delta-G solvation = -42.481978 kcal Electronic energy + Delta-G solvation = -32241.976765 eV Core-core repulsion = 27869.621639 eV Total energy + Delta-G solvation = -4372.355126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.75094 -40.83974 -38.63099 -38.19006 -36.68914 -35.75771 -34.95390 -34.71000 -32.23367 -31.51700 -29.88423 -29.14702 -27.95385 -27.17108 -25.20741 -23.75038 -23.01497 -22.20725 -21.49740 -20.26262 -18.95431 -18.12471 -17.85059 -17.60538 -17.01700 -16.46943 -16.31326 -15.86648 -15.68006 -15.39759 -14.88808 -14.77490 -14.58909 -14.33752 -14.07994 -13.86664 -13.69371 -13.45615 -13.23018 -13.04248 -12.65130 -12.49065 -12.33327 -12.23888 -12.09885 -11.78757 -11.74186 -11.52694 -11.40066 -11.20961 -10.88140 -10.50479 -10.33651 -10.31645 -10.21462 -10.06583 -9.52921 -8.82134 -8.68254 -8.32918 -7.47276 -7.29760 -6.60493 -4.43151 1.07887 1.45827 2.27841 2.81090 2.93495 3.13523 3.24115 3.28828 3.34522 3.45613 3.69235 4.02474 4.10699 4.44675 4.53830 4.67370 4.71436 4.74289 4.84110 4.98219 5.12777 5.18290 5.24095 5.27921 5.43119 5.48515 5.55903 5.62868 5.71108 5.74644 5.88773 5.94902 6.02378 6.24557 6.33116 6.56661 6.60065 6.68009 6.71747 6.90829 6.95685 7.26776 7.38735 7.86729 8.25238 8.30666 8.42877 8.97281 9.03517 9.79064 10.47436 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.003650 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.510241 B = 7669.961173 C = 8334.066294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 H 0.125 0.875 4 C 0.531 3.469 5 O -0.528 6.528 6 N -0.655 5.655 7 C 0.113 3.887 8 C -0.082 4.082 9 C -0.050 4.050 10 C 0.541 3.459 11 O -0.552 6.552 12 N -0.432 5.432 13 C -0.337 4.337 14 H 0.084 0.916 15 C 0.071 3.929 16 N -0.855 5.855 17 Si 0.912 3.088 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.282 1.282 21 C 0.117 3.883 22 C 0.458 3.542 23 O -0.503 6.503 24 O -0.523 6.523 25 C -0.155 4.155 26 C -0.135 4.135 27 C 0.077 3.923 28 N -0.481 5.481 29 C 0.020 3.980 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.414 0.586 34 H 0.136 0.864 35 H 0.273 0.727 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.399 0.601 39 H 0.171 0.829 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 14.594 -3.531 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.143 0.857 4 C 0.318 3.682 5 O -0.403 6.403 6 N -0.301 5.301 7 C 0.016 3.984 8 C -0.103 4.103 9 C -0.055 4.055 10 C 0.330 3.670 11 O -0.433 6.433 12 N -0.154 5.154 13 C -0.464 4.464 14 H 0.101 0.899 15 C -0.139 4.139 16 N -0.488 5.488 17 Si 0.738 3.262 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.208 1.208 21 C -0.008 4.008 22 C 0.301 3.699 23 O -0.391 6.391 24 O -0.334 6.334 25 C -0.173 4.173 26 C -0.156 4.156 27 C -0.023 4.023 28 N -0.196 5.196 29 C -0.126 4.126 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.253 0.747 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.257 0.743 39 H 0.187 0.813 40 H 0.152 0.848 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.651 14.698 -2.493 15.142 hybrid contribution -0.352 -0.646 0.503 0.891 sum 2.299 14.052 -1.990 14.377 Atomic orbital electron populations 1.22412 0.93794 1.03946 1.03990 1.22014 0.95723 0.99429 0.87089 0.85707 1.20566 0.76469 0.81892 0.89287 1.90765 1.49042 1.65417 1.35074 1.43713 1.64633 1.07099 1.14636 1.17259 1.04765 0.91928 0.84428 1.20535 0.99674 0.90971 0.99157 1.19966 0.98048 0.94906 0.92602 1.18223 0.78689 0.84888 0.85224 1.90641 1.50415 1.72380 1.29863 1.42783 1.61526 1.07862 1.03245 1.19009 1.06817 0.81099 1.39436 0.89880 1.25750 0.95470 0.99418 0.93260 1.69900 1.20240 1.40867 1.17776 0.86148 0.79482 0.81233 0.79383 1.18725 1.20258 1.20800 1.21956 0.89472 0.96362 0.92964 1.24373 0.85954 0.77741 0.81811 1.90781 1.60538 1.61821 1.25925 1.84578 1.47853 1.58246 1.42713 1.22864 0.99719 0.95010 0.99755 1.20755 1.03691 0.94504 0.96635 1.18491 1.02384 0.88748 0.92707 1.58718 1.56421 1.01171 1.03324 1.22592 0.98791 0.99993 0.91214 0.90692 0.90319 0.91345 0.74679 0.84583 0.91680 0.86479 0.88018 0.74340 0.81267 0.84845 0.90477 0.89825 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.49 37.16 0.32 -1.46 16 2 C 0.07 0.75 2.90 -68.96 -0.20 0.55 16 3 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.53 7.53 7.16 -10.83 -0.08 7.45 16 5 O -0.53 -8.76 17.96 5.54 0.10 -8.66 16 6 N -0.66 -9.30 5.49 -9.66 -0.05 -9.35 16 7 C 0.11 1.76 6.17 -83.45 -0.51 1.24 16 8 C -0.08 -1.48 9.48 -39.05 -0.37 -1.85 16 9 C -0.05 -1.00 3.54 -104.94 -0.37 -1.37 16 10 C 0.54 13.19 6.66 -12.52 -0.08 13.11 16 11 O -0.55 -15.24 16.47 5.24 0.09 -15.15 16 12 N -0.43 -10.37 2.61 -119.04 -0.31 -10.68 16 13 C -0.34 -8.80 8.32 -15.00 -0.12 -8.93 16 14 H 0.08 2.26 7.95 -52.48 -0.42 1.84 16 15 C 0.07 1.77 5.46 -17.46 -0.10 1.67 16 16 N -0.86 -21.05 12.87 55.50 0.71 -20.34 16 17 Si 0.91 19.98 29.62 -169.99 -5.04 14.94 16 18 H -0.26 -5.90 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C 0.12 2.27 4.85 -5.20 -0.03 2.25 16 22 C 0.46 7.85 4.67 36.01 0.17 8.02 16 23 O -0.50 -10.05 13.00 -18.76 -0.24 -10.30 16 24 O -0.52 -6.73 13.34 -39.26 -0.52 -7.25 16 25 C -0.16 -2.57 5.66 -39.19 -0.22 -2.79 16 26 C -0.13 -1.83 8.91 -39.46 -0.35 -2.18 16 27 C 0.08 1.07 5.06 -83.66 -0.42 0.65 16 28 N -0.48 -5.54 4.86 -172.65 -0.84 -6.37 16 29 C 0.02 0.16 7.57 60.06 0.45 0.62 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.60 6.52 -51.93 -0.34 0.26 16 32 H 0.07 0.79 7.29 -51.93 -0.38 0.41 16 33 H 0.41 5.35 8.90 -40.82 -0.36 4.99 16 34 H 0.14 2.48 7.77 -52.49 -0.41 2.07 16 35 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 36 H 0.12 2.31 7.92 -51.93 -0.41 1.90 16 37 H 0.10 1.86 6.05 -51.93 -0.31 1.55 16 38 H 0.40 3.65 9.10 45.56 0.41 4.07 16 39 H 0.17 2.76 2.83 -54.84 -0.16 2.61 16 40 H 0.13 1.41 5.97 -52.49 -0.31 1.10 16 41 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.08 0.61 6.83 -51.93 -0.35 0.26 16 43 H 0.05 0.38 6.63 -51.93 -0.34 0.04 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -32.96 348.86 -6.55 -39.51 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -3.78 Total: 11.42 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: -1.92 Total: 16.98 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.49 Total: -46.75 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.58 Total: -41.37 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.04 Total: 14.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.96 -6.55 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828144129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.967 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds