Wall clock time and date at job start Wed Apr 1 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.27754 * 2 1 4 4 C 1.50684 * 109.36934 * 119.70261 * 2 1 3 5 5 O 1.21300 * 120.31231 * 265.20791 * 4 2 1 6 6 N 1.35147 * 119.37689 * 85.49394 * 4 2 1 7 7 C 1.40352 * 118.52058 * 0.20311 * 6 4 2 8 8 C 1.38013 * 120.38785 * 198.56541 * 7 6 4 9 9 C 1.39890 * 119.76129 * 179.97438 * 8 7 6 10 10 C 1.47419 * 120.08595 * 180.02562 * 9 8 7 11 11 O 1.21641 * 120.00034 * 19.23349 * 10 9 8 12 12 N 1.34775 * 119.99748 * 199.22319 * 10 9 8 13 13 C 1.36914 * 119.99612 * 180.32778 * 12 10 9 14 14 H 1.08003 * 119.99676 * 291.05191 * 13 12 10 15 15 C 1.39009 * 120.00038 * 111.05905 * 13 12 10 16 16 N 1.31386 * 120.00219 * 25.53800 * 15 13 12 17 17 Si 1.86800 * 119.99853 * 205.53530 * 15 13 12 18 18 H 1.48500 * 109.47305 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47190 * 120.00150 * 17 15 13 20 20 H 1.48506 * 109.47232 * 240.00152 * 17 15 13 21 21 C 1.46497 * 120.00482 * 0.32547 * 12 10 9 22 22 C 1.50700 * 109.46719 * 47.64298 * 21 12 10 23 23 O 1.20833 * 120.00137 * 359.97438 * 22 21 12 24 24 O 1.34231 * 119.99950 * 180.02562 * 22 21 12 25 25 C 1.39839 * 119.82406 * 0.02562 * 9 8 7 26 26 C 1.37669 * 120.14517 * 0.05654 * 25 9 8 27 27 C 1.39130 * 120.17872 * 0.02562 * 26 25 9 28 28 N 1.39080 * 119.98072 * 179.83980 * 27 26 25 29 29 C 1.46897 * 111.00034 * 19.39720 * 28 27 26 30 30 H 1.09002 * 109.47195 * 300.29645 * 1 2 3 31 31 H 1.09003 * 109.46861 * 60.29827 * 1 2 3 32 32 H 1.08998 * 109.46979 * 180.29772 * 1 2 3 33 33 H 0.97007 * 120.73605 * 180.45505 * 6 4 2 34 34 H 1.07997 * 120.12212 * 359.92245 * 8 7 6 35 35 H 0.97002 * 120.00141 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47630 * 167.64042 * 21 12 10 37 37 H 1.09002 * 109.47241 * 287.64754 * 21 12 10 38 38 H 0.96702 * 117.00249 * 180.02562 * 24 22 21 39 39 H 1.08004 * 119.92761 * 180.02562 * 25 9 8 40 40 H 1.07996 * 119.90872 * 180.02562 * 26 25 9 41 41 H 1.09005 * 109.46779 * 175.31633 * 29 28 27 42 42 H 1.08993 * 109.47444 * 295.32089 * 29 28 27 43 43 H 1.09001 * 109.46720 * 55.32741 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0289 0.0000 4 6 2.0298 -0.7044 1.2348 5 8 2.3154 -0.0698 2.2283 6 7 2.1624 -2.0493 1.2230 7 6 1.8310 -2.7451 0.0500 8 6 1.5801 -4.1016 0.0902 9 6 1.2504 -4.7820 -1.0868 10 6 0.9804 -6.2308 -1.0521 11 8 0.6981 -6.7718 0.0002 12 7 1.0461 -6.9559 -2.1862 13 6 0.7888 -8.3003 -2.1550 14 1 1.4771 -8.9705 -1.6617 15 6 -0.3584 -8.8025 -2.7585 16 7 -0.9208 -8.1469 -3.7485 17 14 -1.1003 -10.4097 -2.1618 18 1 -0.2842 -10.9466 -1.0434 19 1 -2.4879 -10.1696 -1.6906 20 1 -1.1189 -11.3904 -3.2769 21 6 1.3928 -6.3057 -3.4524 22 6 2.6052 -5.4330 -3.2534 23 8 3.1259 -5.3612 -2.1654 24 8 3.1060 -4.7347 -4.2845 25 6 1.1776 -4.0841 -2.2965 26 6 1.4307 -2.7313 -2.3305 27 6 1.7605 -2.0519 -1.1620 28 7 2.0186 -0.6858 -1.2016 29 6 1.4597 -0.0795 -2.4173 30 1 -0.3634 0.5184 0.8873 31 1 -0.3633 0.5092 -0.8927 32 1 -0.3633 -1.0276 0.0053 33 1 2.4761 -2.5235 2.0089 34 1 1.6388 -4.6361 1.0267 35 1 -1.7215 -8.4972 -4.1693 36 1 1.6111 -7.0651 -4.2031 37 1 0.5556 -5.6934 -3.7876 38 1 3.8849 -4.1893 -4.1084 39 1 0.9228 -4.6076 -3.2061 40 1 1.3730 -2.1960 -3.2667 41 1 1.6027 1.0006 -2.3833 42 1 1.9669 -0.4859 -3.2923 43 1 0.3946 -0.3032 -2.4781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828144129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:13 Heat of formation + Delta-G solvation = -68.677432 kcal Electronic energy + Delta-G solvation = -32243.112685 eV Core-core repulsion = 27869.621639 eV Total energy + Delta-G solvation = -4373.491046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.98287 -42.12446 -39.98605 -39.60411 -37.85266 -37.12130 -36.45126 -36.17949 -34.01340 -32.59935 -31.19956 -30.29832 -29.42112 -28.12663 -26.83658 -24.90888 -24.21832 -23.42809 -22.84631 -21.69887 -20.20095 -19.51359 -19.07130 -18.86719 -18.72704 -17.80461 -17.62430 -17.08675 -16.80241 -16.67250 -16.61531 -16.13419 -15.75584 -15.60166 -15.38401 -15.20159 -15.08309 -14.76314 -14.54128 -14.10738 -13.85114 -13.80981 -13.72491 -13.50296 -13.32102 -13.08648 -12.92546 -12.71661 -12.66398 -12.56040 -12.50954 -12.16819 -11.80752 -11.55473 -11.44731 -11.33069 -10.71908 -10.67095 -10.51062 -9.58375 -9.29626 -8.55322 -8.43177 -6.39754 -0.19541 0.19340 1.13076 1.36301 1.44013 1.48144 1.55332 1.82571 1.91346 2.16297 2.34518 2.56871 2.73751 2.97749 3.05451 3.09375 3.54904 3.75782 3.78882 3.93923 4.04082 4.15664 4.25148 4.35635 4.46444 4.55436 4.57465 4.59511 4.66151 4.70676 4.73523 4.85048 4.98873 4.99889 5.12416 5.33053 5.42278 5.44725 5.47862 5.69136 5.74764 5.86888 6.14357 6.27612 6.57718 6.74434 7.04988 7.10830 7.23173 7.93426 8.56421 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.003650 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.510241 B = 7669.961173 C = 8334.066294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.151 0.849 4 C 0.525 3.475 5 O -0.557 6.557 6 N -0.657 5.657 7 C 0.108 3.892 8 C -0.094 4.094 9 C -0.080 4.080 10 C 0.524 3.476 11 O -0.609 6.609 12 N -0.443 5.443 13 C -0.371 4.371 14 H 0.055 0.945 15 C 0.043 3.957 16 N -0.862 5.862 17 Si 0.963 3.037 18 H -0.279 1.279 19 H -0.277 1.277 20 H -0.260 1.260 21 C 0.119 3.881 22 C 0.476 3.524 23 O -0.532 6.532 24 O -0.500 6.500 25 C -0.151 4.151 26 C -0.120 4.120 27 C 0.095 3.905 28 N -0.484 5.484 29 C 0.010 3.990 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.046 0.954 33 H 0.415 0.585 34 H 0.117 0.883 35 H 0.281 0.719 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.423 0.577 39 H 0.173 0.827 40 H 0.178 0.822 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 17.943 -6.336 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.038 4.038 3 H 0.168 0.832 4 C 0.314 3.686 5 O -0.434 6.434 6 N -0.302 5.302 7 C 0.011 3.989 8 C -0.116 4.116 9 C -0.085 4.085 10 C 0.316 3.684 11 O -0.494 6.494 12 N -0.164 5.164 13 C -0.498 4.498 14 H 0.073 0.927 15 C -0.166 4.166 16 N -0.494 5.494 17 Si 0.787 3.213 18 H -0.204 1.204 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.005 4.005 22 C 0.320 3.680 23 O -0.422 6.422 24 O -0.313 6.313 25 C -0.169 4.169 26 C -0.140 4.140 27 C -0.006 4.006 28 N -0.198 5.198 29 C -0.134 4.134 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.065 0.935 33 H 0.253 0.747 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.284 0.716 39 H 0.189 0.811 40 H 0.195 0.805 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.473 18.088 -5.382 19.033 hybrid contribution -0.208 -1.512 1.351 2.038 sum 2.265 16.576 -4.031 17.209 Atomic orbital electron populations 1.22412 0.92382 1.03028 1.05779 1.22136 0.96655 0.99831 0.85226 0.83199 1.21248 0.75718 0.81518 0.90156 1.90751 1.50392 1.65750 1.36495 1.43797 1.64386 1.07505 1.14481 1.17220 1.04950 0.91049 0.85667 1.20409 1.00774 0.92258 0.98148 1.19593 1.01823 0.92402 0.94728 1.19027 0.77763 0.87007 0.84618 1.90568 1.53108 1.74018 1.31693 1.42872 1.61409 1.07405 1.04691 1.18890 1.07937 0.82190 1.40756 0.92689 1.26227 0.95198 1.02046 0.93113 1.69882 1.20357 1.41726 1.17431 0.85399 0.78147 0.78826 0.78966 1.20418 1.20226 1.18444 1.21819 0.91426 0.96858 0.90387 1.23528 0.85022 0.77602 0.81840 1.90812 1.61270 1.62847 1.27303 1.84484 1.48755 1.57769 1.40255 1.22794 0.99684 0.96221 0.98229 1.21103 1.01659 0.93120 0.98160 1.18717 0.99704 0.90295 0.91869 1.58708 1.56519 0.99679 1.04941 1.22868 0.99389 1.01619 0.89531 0.90294 0.87255 0.93525 0.74673 0.86543 0.90896 0.87040 0.86511 0.71592 0.81067 0.80528 0.87757 0.88406 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.49 71.98 0.61 -2.20 16 2 C 0.07 1.33 2.90 44.20 0.13 1.46 16 3 H 0.15 2.16 8.14 -2.38 -0.02 2.14 16 4 C 0.53 14.17 7.16 87.59 0.63 14.79 16 5 O -0.56 -18.02 17.96 -3.09 -0.06 -18.08 16 6 N -0.66 -18.62 5.49 -302.64 -1.66 -20.28 16 7 C 0.11 3.32 6.17 38.10 0.24 3.56 16 8 C -0.09 -3.56 9.48 22.62 0.21 -3.35 16 9 C -0.08 -3.29 3.54 -20.07 -0.07 -3.37 16 10 C 0.52 27.16 6.66 86.66 0.58 27.74 16 11 O -0.61 -36.41 16.47 -4.16 -0.07 -36.48 16 12 N -0.44 -22.24 2.61 -648.77 -1.69 -23.93 16 13 C -0.37 -20.44 8.32 84.08 0.70 -19.74 16 14 H 0.06 3.24 7.95 -2.91 -0.02 3.22 16 15 C 0.04 2.20 5.46 84.94 0.46 2.67 16 16 N -0.86 -42.48 12.87 21.67 0.28 -42.20 16 17 Si 0.96 41.88 29.62 68.60 2.03 43.92 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 C 0.12 4.64 4.85 85.63 0.41 5.06 16 22 C 0.48 15.77 4.67 71.24 0.33 16.10 16 23 O -0.53 -21.30 13.00 21.94 0.29 -21.01 16 24 O -0.50 -11.12 13.34 -51.43 -0.69 -11.80 16 25 C -0.15 -4.77 5.66 22.52 0.13 -4.64 16 26 C -0.12 -2.80 8.91 22.35 0.20 -2.60 16 27 C 0.10 2.38 5.06 38.58 0.20 2.58 16 28 N -0.48 -8.99 4.86 -700.15 -3.40 -12.39 16 29 C 0.01 0.10 7.57 127.69 0.97 1.07 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.08 6.52 -2.39 -0.02 1.07 16 32 H 0.05 0.97 7.29 -2.39 -0.02 0.95 16 33 H 0.41 11.22 8.90 -92.70 -0.83 10.40 16 34 H 0.12 4.71 7.77 -2.91 -0.02 4.69 16 35 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 36 H 0.11 4.43 7.92 -2.39 -0.02 4.41 16 37 H 0.12 4.17 6.05 -2.39 -0.01 4.16 16 38 H 0.42 5.87 9.10 -74.06 -0.67 5.19 16 39 H 0.17 5.27 2.83 -5.12 -0.01 5.26 16 40 H 0.18 2.61 5.97 -2.91 -0.02 2.60 16 41 H 0.10 0.56 8.08 -2.38 -0.02 0.54 16 42 H 0.10 0.75 6.83 -2.39 -0.02 0.74 16 43 H 0.06 0.53 6.63 -2.39 -0.02 0.52 16 Total: -1.00 -77.28 348.86 0.37 -76.91 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.38 Total: 26.23 kcal Atomic # 6 Polarization: 33.40 SS G_CDS: 5.72 Total: 39.12 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -6.48 Total: -98.80 kcal Atomic # 8 Polarization: -86.85 SS G_CDS: -0.52 Total: -87.37 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.92 kcal Total: -77.28 0.37 -76.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828144129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.234 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds