Wall clock time and date at job start Wed Apr 1 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 C 1.50697 * 109.47188 * 120.00042 * 2 1 3 5 5 H 1.08000 * 119.99937 * 119.99509 * 4 2 1 6 6 C 1.37878 * 120.00412 * 300.00039 * 4 2 1 7 7 N 1.31521 * 119.99571 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00362 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46979 * 60.00107 * 8 6 4 10 10 H 1.48505 * 109.46966 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47074 * 300.00016 * 8 6 4 12 12 N 1.46501 * 109.46821 * 239.99919 * 2 1 3 13 13 C 1.46499 * 120.00413 * 299.99769 * 12 2 1 14 14 S 1.65597 * 119.99785 * 120.00220 * 12 2 1 15 15 O 1.42097 * 106.40461 * 156.45899 * 14 12 2 16 16 O 1.42104 * 106.40453 * 23.53980 * 14 12 2 17 17 N 1.65603 * 107.21813 * 269.99943 * 14 12 2 18 18 C 1.47016 * 125.65068 * 90.02540 * 17 14 12 19 19 C 1.54320 * 107.27602 * 178.89584 * 18 17 14 20 20 C 1.55158 * 102.94099 * 337.80779 * 19 18 17 21 21 H 1.08997 * 111.00975 * 153.61589 * 20 19 18 22 22 N 1.46506 * 111.00132 * 277.42770 * 20 19 18 23 23 C 1.47090 * 125.56023 * 56.15542 * 22 20 19 24 24 C 1.54085 * 103.77887 * 179.97438 * 23 22 20 25 25 O 1.45704 * 104.00888 * 359.97438 * 24 23 22 26 26 C 1.33775 * 109.47472 * 359.97438 * 25 24 23 27 27 O 1.21510 * 123.07329 * 179.97438 * 26 25 24 28 28 C 1.47421 * 125.64874 * 269.96812 * 17 14 12 29 29 H 1.09004 * 109.47186 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47672 * 60.00046 * 1 2 3 31 31 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 32 32 H 0.96996 * 119.99921 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47063 * 270.00385 * 13 12 2 34 34 H 1.09004 * 109.46847 * 30.00501 * 13 12 2 35 35 H 1.08998 * 109.47243 * 149.99947 * 13 12 2 36 36 H 1.09001 * 109.88667 * 59.47421 * 18 17 14 37 37 H 1.08998 * 109.88122 * 298.31227 * 18 17 14 38 38 H 1.09004 * 110.72210 * 219.44357 * 19 18 17 39 39 H 1.09005 * 110.72250 * 96.16769 * 19 18 17 40 40 H 1.09005 * 110.56195 * 298.56889 * 23 22 20 41 41 H 1.08996 * 110.56804 * 61.27426 * 23 22 20 42 42 H 1.09006 * 110.52380 * 241.36793 * 24 23 22 43 43 H 1.09000 * 110.52391 * 118.62399 * 24 23 22 44 44 H 1.09008 * 110.36529 * 85.33741 * 28 17 14 45 45 H 1.09002 * 110.36840 * 323.01718 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8259 -0.4207 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0182 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1141 -2.2862 15 8 3.7117 -0.8789 -2.9815 16 8 3.5794 1.1829 -1.5748 17 7 1.9606 0.8090 -3.3998 18 6 1.3753 2.1543 -3.3039 19 6 0.5305 2.3783 -4.5758 20 6 1.1424 1.3678 -5.5817 21 1 0.4093 1.0700 -6.3313 22 7 2.3427 1.9193 -6.2154 23 6 3.5313 2.4186 -5.5072 24 6 4.4707 2.8719 -6.6413 25 8 3.7212 2.5829 -7.8569 26 6 2.5376 2.0492 -7.5348 27 8 1.7137 1.7145 -8.3629 28 6 1.5007 0.1817 -4.6520 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7087 1.1612 3.4844 33 1 2.4157 -2.7377 -0.9717 34 1 0.6903 -2.3002 -0.9847 35 1 1.6237 -2.2852 -2.5002 36 1 2.1680 2.9005 -3.2492 37 1 0.7400 2.2200 -2.4206 38 1 0.6432 3.3999 -4.9386 39 1 -0.5182 2.1481 -4.3877 40 1 3.2696 3.2609 -4.8667 41 1 3.9910 1.6223 -4.9220 42 1 5.3988 2.3005 -6.6202 43 1 4.6763 3.9395 -6.5636 44 1 0.6206 -0.4343 -4.4668 45 1 2.2983 -0.4174 -5.0915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849437417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:59 Heat of formation + Delta-G solvation = -123.966662 kcal Electronic energy + Delta-G solvation = -30852.881768 eV Core-core repulsion = 26612.437153 eV Total energy + Delta-G solvation = -4240.444616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83094 -38.82428 -37.34051 -36.83759 -36.24493 -35.37762 -34.75271 -32.65059 -31.02009 -29.88438 -29.17691 -28.61035 -25.68256 -25.20889 -24.18181 -23.01022 -22.35431 -20.75355 -20.49495 -18.69422 -17.78749 -17.58393 -17.50766 -17.00674 -16.93765 -16.35955 -15.59978 -15.21990 -15.05629 -14.69916 -14.40223 -14.23317 -14.14253 -13.87178 -13.51840 -13.28212 -13.00309 -12.94892 -12.84439 -12.61189 -12.13068 -11.91340 -11.86529 -11.67372 -11.61446 -11.47944 -11.42768 -11.32148 -11.30607 -11.03299 -10.92940 -10.86432 -10.79756 -10.55581 -10.35543 -10.08815 -9.43987 -9.32811 -8.81772 -8.51232 -8.06649 -6.13777 -4.20517 0.97578 2.16560 2.51026 3.21181 3.26064 3.30063 3.30569 3.34799 3.90661 3.91416 4.12923 4.21195 4.34838 4.43661 4.62298 4.72953 4.92951 4.99875 5.05666 5.08558 5.17718 5.22276 5.33439 5.41293 5.53090 5.56581 5.58919 5.72375 5.84095 6.05208 6.06540 6.21286 6.27327 6.36452 6.55445 6.69225 6.72887 6.93211 7.11102 7.36761 7.55365 7.71252 7.80046 7.96472 8.20226 8.81346 9.45621 10.91833 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023884 B = 0.003178 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.062578 B = 8808.899292 C = 8965.959934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.988 5.988 13 C 0.110 3.890 14 S 2.787 3.213 15 O -0.990 6.990 16 O -0.967 6.967 17 N -1.024 6.024 18 C 0.118 3.882 19 C -0.138 4.138 20 C 0.163 3.837 21 H 0.124 0.876 22 N -0.616 5.616 23 C 0.062 3.938 24 C 0.042 3.958 25 O -0.329 6.329 26 C 0.646 3.354 27 O -0.526 6.526 28 C 0.107 3.893 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 3.891 -14.457 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.831 5.831 13 C -0.036 4.036 14 S 2.798 3.202 15 O -0.975 6.975 16 O -0.951 6.951 17 N -0.863 5.863 18 C -0.008 4.008 19 C -0.177 4.177 20 C 0.060 3.940 21 H 0.141 0.859 22 N -0.363 5.363 23 C -0.062 4.062 24 C -0.033 4.033 25 O -0.239 6.239 26 C 0.400 3.600 27 O -0.411 6.411 28 C -0.020 4.020 29 H 0.111 0.889 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.640 3.906 -14.895 15.412 hybrid contribution -0.032 -0.512 1.272 1.372 sum 0.609 3.393 -13.623 14.053 Atomic orbital electron populations 1.22120 0.98227 0.99776 1.00575 1.18737 0.91317 0.92903 0.80479 0.92443 1.21284 1.31774 1.13068 0.90033 0.92039 1.24899 0.94898 0.94993 0.98994 1.69839 1.36403 1.22672 1.23959 0.86552 0.79369 0.79619 0.81848 1.20135 1.21168 1.20207 1.57766 1.70051 1.19796 1.35456 1.21145 1.01804 0.81981 0.98706 1.01767 0.73450 0.73005 0.71955 1.93545 1.68894 1.60181 1.74838 1.93604 1.73662 1.56054 1.71791 1.59500 1.67185 1.25156 1.34440 1.21740 0.96902 0.83463 0.98688 1.23070 1.00476 1.00087 0.94085 1.22065 0.84192 0.92987 0.94787 0.85860 1.47940 1.18216 1.64771 1.05371 1.22887 0.85829 1.01499 0.95958 1.24353 0.95350 1.03721 0.79917 1.87275 1.28376 1.75751 1.32506 1.18464 0.81518 0.77128 0.82910 1.91035 1.43509 1.54330 1.52218 1.22378 1.00965 0.95037 0.83629 0.88854 0.97069 0.94756 0.92599 0.93226 0.90894 0.93406 0.91309 0.90580 0.89603 0.88603 0.88415 0.89256 0.87410 0.87357 0.89788 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.95 37.16 0.33 -2.81 16 2 C 0.27 6.23 2.62 -69.08 -0.18 6.05 16 3 H 0.06 1.48 6.91 -51.93 -0.36 1.12 16 4 C -0.52 -13.62 8.37 -34.44 -0.29 -13.91 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.92 11.32 55.43 0.63 -23.29 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.99 -19.40 3.12 -115.86 -0.36 -19.76 16 13 C 0.11 1.87 9.53 59.85 0.57 2.44 16 14 S 2.79 50.63 6.30 -107.50 -0.68 49.95 16 15 O -0.99 -19.13 16.53 -57.17 -0.95 -20.07 16 16 O -0.97 -20.70 16.28 -57.17 -0.93 -21.64 16 17 N -1.02 -13.56 3.05 -111.43 -0.34 -13.89 16 18 C 0.12 1.32 6.08 -3.07 -0.02 1.30 16 19 C -0.14 -1.14 6.50 -24.90 -0.16 -1.31 16 20 C 0.16 1.55 3.88 -65.78 -0.26 1.30 16 21 H 0.12 1.12 7.63 -51.93 -0.40 0.72 16 22 N -0.62 -6.49 2.93 -168.78 -0.49 -6.98 16 23 C 0.06 0.54 5.86 -3.15 -0.02 0.52 16 24 C 0.04 0.30 8.23 37.72 0.31 0.61 16 25 O -0.33 -3.78 11.09 -37.84 -0.42 -4.20 16 26 C 0.65 8.36 8.85 53.71 0.48 8.84 16 27 O -0.53 -8.55 17.36 -19.12 -0.33 -8.88 16 28 C 0.11 1.15 6.57 -2.53 -0.02 1.13 16 29 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 35 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 36 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.72 6.74 -51.93 -0.35 0.37 16 41 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 45 H 0.09 1.00 7.78 -51.93 -0.40 0.60 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -33.93 371.25 -9.23 -43.16 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.58 Total: -1.35 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 0.65 Total: 5.78 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -0.57 Total: -63.93 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -2.63 Total: -54.79 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 50.63 SS G_CDS: -0.68 Total: 49.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.93 -9.23 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849437417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.806 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds