Wall clock time and date at job start Wed Apr 1 2020 06:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 C 1.50697 * 109.47188 * 120.00042 * 2 1 3 5 5 H 1.08000 * 119.99937 * 119.99509 * 4 2 1 6 6 C 1.37878 * 120.00412 * 300.00039 * 4 2 1 7 7 N 1.31521 * 119.99571 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00362 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46979 * 60.00107 * 8 6 4 10 10 H 1.48505 * 109.46966 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47074 * 300.00016 * 8 6 4 12 12 N 1.46501 * 109.46821 * 239.99919 * 2 1 3 13 13 C 1.46499 * 120.00413 * 299.99769 * 12 2 1 14 14 S 1.65597 * 119.99785 * 120.00220 * 12 2 1 15 15 O 1.42097 * 106.40461 * 156.45899 * 14 12 2 16 16 O 1.42104 * 106.40453 * 23.53980 * 14 12 2 17 17 N 1.65603 * 107.21813 * 269.99943 * 14 12 2 18 18 C 1.47016 * 125.65068 * 90.02540 * 17 14 12 19 19 C 1.54320 * 107.27602 * 178.89584 * 18 17 14 20 20 C 1.55158 * 102.94099 * 337.80779 * 19 18 17 21 21 H 1.08997 * 111.00975 * 153.61589 * 20 19 18 22 22 N 1.46506 * 111.00132 * 277.42770 * 20 19 18 23 23 C 1.47090 * 125.56023 * 56.15542 * 22 20 19 24 24 C 1.54085 * 103.77887 * 179.97438 * 23 22 20 25 25 O 1.45704 * 104.00888 * 359.97438 * 24 23 22 26 26 C 1.33775 * 109.47472 * 359.97438 * 25 24 23 27 27 O 1.21510 * 123.07329 * 179.97438 * 26 25 24 28 28 C 1.47421 * 125.64874 * 269.96812 * 17 14 12 29 29 H 1.09004 * 109.47186 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47672 * 60.00046 * 1 2 3 31 31 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 32 32 H 0.96996 * 119.99921 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47063 * 270.00385 * 13 12 2 34 34 H 1.09004 * 109.46847 * 30.00501 * 13 12 2 35 35 H 1.08998 * 109.47243 * 149.99947 * 13 12 2 36 36 H 1.09001 * 109.88667 * 59.47421 * 18 17 14 37 37 H 1.08998 * 109.88122 * 298.31227 * 18 17 14 38 38 H 1.09004 * 110.72210 * 219.44357 * 19 18 17 39 39 H 1.09005 * 110.72250 * 96.16769 * 19 18 17 40 40 H 1.09005 * 110.56195 * 298.56889 * 23 22 20 41 41 H 1.08996 * 110.56804 * 61.27426 * 23 22 20 42 42 H 1.09006 * 110.52380 * 241.36793 * 24 23 22 43 43 H 1.09000 * 110.52391 * 118.62399 * 24 23 22 44 44 H 1.09008 * 110.36529 * 85.33741 * 28 17 14 45 45 H 1.09002 * 110.36840 * 323.01718 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8259 -0.4207 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0182 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1141 -2.2862 15 8 3.7117 -0.8789 -2.9815 16 8 3.5794 1.1829 -1.5748 17 7 1.9606 0.8090 -3.3998 18 6 1.3753 2.1543 -3.3039 19 6 0.5305 2.3783 -4.5758 20 6 1.1424 1.3678 -5.5817 21 1 0.4093 1.0700 -6.3313 22 7 2.3427 1.9193 -6.2154 23 6 3.5313 2.4186 -5.5072 24 6 4.4707 2.8719 -6.6413 25 8 3.7212 2.5829 -7.8569 26 6 2.5376 2.0492 -7.5348 27 8 1.7137 1.7145 -8.3629 28 6 1.5007 0.1817 -4.6520 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7087 1.1612 3.4844 33 1 2.4157 -2.7377 -0.9717 34 1 0.6903 -2.3002 -0.9847 35 1 1.6237 -2.2852 -2.5002 36 1 2.1680 2.9005 -3.2492 37 1 0.7400 2.2200 -2.4206 38 1 0.6432 3.3999 -4.9386 39 1 -0.5182 2.1481 -4.3877 40 1 3.2696 3.2609 -4.8667 41 1 3.9910 1.6223 -4.9220 42 1 5.3988 2.3005 -6.6202 43 1 4.6763 3.9395 -6.5636 44 1 0.6206 -0.4343 -4.4668 45 1 2.2983 -0.4174 -5.0915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849437417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:58 Heat of formation + Delta-G solvation = -148.887980 kcal Electronic energy + Delta-G solvation = -30853.962438 eV Core-core repulsion = 26612.437153 eV Total energy + Delta-G solvation = -4241.525285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.67360 -39.71299 -38.38498 -38.33564 -37.89331 -36.92882 -35.64091 -34.53031 -31.86590 -30.93224 -30.66969 -29.45464 -27.28555 -27.01019 -24.94867 -23.89247 -23.30175 -22.43098 -21.33511 -19.96678 -19.01046 -18.70793 -18.48795 -18.28841 -18.13728 -17.81402 -17.08782 -16.44336 -16.23187 -15.97525 -15.36711 -15.23738 -15.09210 -14.96537 -14.84957 -14.64255 -14.52718 -14.00916 -13.75030 -13.70454 -13.40550 -13.30525 -13.25310 -13.16819 -13.01059 -12.80005 -12.75502 -12.65057 -12.60085 -12.37189 -12.22877 -12.17291 -12.13970 -11.89458 -11.79468 -11.68655 -11.15583 -10.50690 -10.35538 -9.78948 -9.65387 -8.12049 -6.25186 -0.44049 1.35661 1.42993 1.44488 1.51350 1.55951 1.98598 2.42216 2.49711 2.55593 3.15106 3.16358 3.26144 3.33412 3.62465 3.85761 3.90113 4.05951 4.07150 4.27763 4.32562 4.44698 4.49131 4.60229 4.65749 4.67604 4.75092 4.80350 4.85247 4.94176 4.99359 5.02145 5.06250 5.09282 5.15969 5.18217 5.34413 5.44676 5.61854 5.77668 5.88294 6.14304 6.26228 6.31110 6.81626 6.86810 7.43746 8.91506 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023884 B = 0.003178 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.062578 B = 8808.899292 C = 8965.959934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.027 0.973 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.268 1.268 12 N -0.998 5.998 13 C 0.105 3.895 14 S 2.804 3.196 15 O -1.005 7.005 16 O -1.005 7.005 17 N -1.017 6.017 18 C 0.110 3.890 19 C -0.120 4.120 20 C 0.163 3.837 21 H 0.133 0.867 22 N -0.611 5.611 23 C 0.055 3.945 24 C 0.042 3.958 25 O -0.344 6.344 26 C 0.644 3.356 27 O -0.567 6.567 28 C 0.103 3.897 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.140 0.860 44 H 0.108 0.892 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 4.055 -15.203 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.776 3.224 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.816 3.184 15 O -0.989 6.989 16 O -0.990 6.990 17 N -0.858 5.858 18 C -0.015 4.015 19 C -0.160 4.160 20 C 0.060 3.940 21 H 0.151 0.849 22 N -0.357 5.357 23 C -0.068 4.068 24 C -0.032 4.032 25 O -0.253 6.253 26 C 0.399 3.601 27 O -0.456 6.456 28 C -0.023 4.023 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.158 0.842 44 H 0.126 0.874 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.065 4.053 -15.616 16.134 hybrid contribution 0.220 -0.540 1.454 1.567 sum 0.286 3.513 -14.162 14.594 Atomic orbital electron populations 1.21900 0.96665 1.00148 1.00631 1.18392 0.92344 0.91274 0.80951 0.95495 1.21623 1.31804 1.13062 0.91667 0.92906 1.25570 0.95189 0.95694 1.01429 1.69946 1.37050 1.23506 1.24411 0.85729 0.78479 0.79078 0.79065 1.20542 1.20608 1.19325 1.57692 1.70118 1.20954 1.35167 1.21310 1.01658 0.80430 1.00715 1.00962 0.73398 0.72226 0.71816 1.93518 1.69711 1.60806 1.74888 1.93549 1.75042 1.57215 1.73153 1.59015 1.66762 1.25984 1.34059 1.21961 0.97296 0.82215 1.00040 1.23039 1.00775 1.00536 0.91630 1.22174 0.84116 0.92864 0.94862 0.84891 1.48033 1.18837 1.64047 1.04788 1.23062 0.85554 1.01603 0.96572 1.24711 0.94891 1.05998 0.77616 1.87242 1.28090 1.75466 1.34547 1.18557 0.81524 0.76860 0.83157 1.90993 1.45002 1.56205 1.53360 1.22616 1.01511 0.95688 0.82459 0.91542 0.94168 0.94117 0.92596 0.94306 0.90327 0.90326 0.91078 0.91464 0.88114 0.86552 0.86746 0.90619 0.85830 0.84236 0.87420 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 8.95 71.98 0.64 -4.96 16 2 C 0.27 12.80 2.62 44.24 0.12 12.92 16 3 H 0.03 1.43 6.91 -2.39 -0.02 1.41 16 4 C -0.54 -28.56 8.37 25.60 0.21 -28.34 16 5 H 0.05 2.79 7.65 -2.91 -0.02 2.77 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.91 -49.32 11.32 21.45 0.24 -49.08 16 8 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 N -1.00 -38.70 3.12 -520.46 -1.62 -40.32 16 13 C 0.10 3.43 9.53 127.77 1.22 4.64 16 14 S 2.80 100.75 6.30 -56.49 -0.36 100.39 16 15 O -1.01 -38.24 16.53 -128.00 -2.12 -40.36 16 16 O -1.01 -43.65 16.28 -128.00 -2.08 -45.74 16 17 N -1.02 -25.34 3.05 -506.45 -1.54 -26.88 16 18 C 0.11 2.26 6.08 86.73 0.53 2.79 16 19 C -0.12 -1.63 6.50 31.78 0.21 -1.42 16 20 C 0.16 2.71 3.88 46.38 0.18 2.89 16 21 H 0.13 2.06 7.63 -2.39 -0.02 2.05 16 22 N -0.61 -11.76 2.93 -919.62 -2.69 -14.45 16 23 C 0.05 0.87 5.86 86.63 0.51 1.38 16 24 C 0.04 0.50 8.23 72.35 0.60 1.10 16 25 O -0.34 -7.42 11.09 -47.35 -0.53 -7.95 16 26 C 0.64 15.97 8.85 129.91 1.15 17.12 16 27 O -0.57 -18.16 17.36 19.65 0.34 -17.82 16 28 C 0.10 1.99 6.57 86.85 0.57 2.56 16 29 H 0.07 3.17 6.07 -2.39 -0.01 3.16 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.61 6.66 -2.39 -0.02 1.59 16 32 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.46 6.43 -2.38 -0.02 2.45 16 35 H 0.08 2.05 7.79 -2.39 -0.02 2.04 16 36 H 0.07 1.43 6.71 -2.39 -0.02 1.42 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.11 1.42 6.74 -2.38 -0.02 1.40 16 41 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16 42 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.08 1.66 7.78 -2.39 -0.02 1.64 16 Total: -1.00 -74.50 371.25 -0.95 -75.44 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.00 Total: 10.24 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.38 Total: 12.24 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -5.62 Total: -130.73 kcal Atomic # 8 Polarization: -107.48 SS G_CDS: -4.38 Total: -111.86 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 100.75 SS G_CDS: -0.36 Total: 100.39 kcal Total: -74.50 -0.95 -75.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849437417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.444 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds