Wall clock time and date at job start Wed Apr 1 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35956 * 117.00441 * 2 1 4 4 C 1.38190 * 120.00269 * 0.02562 * 3 2 1 5 5 C 1.39761 * 119.84948 * 180.02562 * 4 3 2 6 6 C 1.47364 * 120.06068 * 180.02562 * 5 4 3 7 7 N 1.29801 * 119.99839 * 180.02562 * 6 5 4 8 8 N 1.40104 * 119.99688 * 185.06807 * 7 6 5 9 9 C 1.35113 * 124.14026 * 354.71981 * 8 7 6 10 10 O 1.21256 * 127.33408 * 359.97438 * 9 8 7 11 11 C 1.51581 * 105.50927 * 180.02562 * 9 8 7 12 12 H 1.09002 * 110.59967 * 118.47844 * 11 9 8 13 13 C 1.53006 * 110.59891 * 241.27249 * 11 9 8 14 14 N 1.47309 * 103.72949 * 359.87557 * 11 9 8 15 15 C 1.46507 * 126.69118 * 180.02562 * 14 11 9 16 16 C 1.33798 * 124.17439 * 174.57775 * 8 7 6 17 17 O 1.21541 * 123.77406 * 0.03884 * 16 8 7 18 18 C 1.39822 * 119.87240 * 0.27620 * 5 4 3 19 19 C 1.37756 * 120.01610 * 359.44210 * 18 5 4 20 20 C 1.38963 * 120.14428 * 0.55967 * 19 18 5 21 21 O 1.35686 * 119.93824 * 179.69639 * 20 19 18 22 22 C 1.34793 * 117.00111 * 5.61647 * 21 20 19 23 23 H 1.08001 * 119.99478 * 354.93507 * 22 21 20 24 24 C 1.38630 * 120.00486 * 174.93727 * 22 21 20 25 25 N 1.31574 * 119.99785 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00204 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47040 * 89.99632 * 26 24 22 28 28 H 1.48503 * 109.47119 * 209.99711 * 26 24 22 29 29 H 1.48493 * 109.46911 * 330.00038 * 26 24 22 30 30 H 1.08998 * 109.46937 * 59.99550 * 1 2 3 31 31 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46372 * 299.99853 * 1 2 3 33 33 H 1.08001 * 120.07600 * 0.04407 * 4 3 2 34 34 H 1.07998 * 119.99952 * 359.97438 * 6 5 4 35 35 H 1.09001 * 109.46690 * 176.46739 * 13 11 9 36 36 H 1.08992 * 109.47107 * 296.46634 * 13 11 9 37 37 H 1.09001 * 109.46933 * 56.47307 * 13 11 9 38 38 H 1.08997 * 109.47268 * 90.00083 * 15 14 11 39 39 H 1.08998 * 109.46978 * 210.00263 * 15 14 11 40 40 H 1.09000 * 109.46775 * 329.99990 * 15 14 11 41 41 H 1.08002 * 119.99006 * 179.70350 * 18 5 4 42 42 H 1.08000 * 119.93142 * 180.27797 * 19 18 5 43 43 H 0.96998 * 119.99826 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2938 2.3704 0.0005 5 6 1.9318 3.6139 0.0000 6 6 1.1339 4.8529 0.0011 7 7 1.7276 6.0071 0.0001 8 7 0.9734 7.1828 0.1084 9 6 -0.3772 7.2194 0.1152 10 8 -1.1388 6.2795 0.0317 11 6 -0.7424 8.6846 0.2479 12 1 -1.3093 9.0188 -0.6210 13 6 -1.5370 8.9270 1.5328 14 7 0.5622 9.3659 0.3090 15 6 0.7920 10.8069 0.4399 16 6 1.5016 8.4070 0.2205 17 8 2.6966 8.6281 0.2395 18 6 3.3284 3.6801 -0.0069 19 6 4.0733 2.5214 -0.0016 20 6 3.4397 1.2845 -0.0011 21 8 4.1775 0.1458 -0.0020 22 6 5.5135 0.2821 0.1141 23 1 5.9573 1.2667 0.1200 24 6 6.3179 -0.8415 0.2258 25 7 5.7772 -2.0409 0.2190 26 14 8.1693 -0.6524 0.3874 27 1 8.5333 -0.5543 1.8237 28 1 8.8417 -1.8320 -0.2142 29 1 8.6046 0.5792 -0.3188 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 0.2152 2.3154 0.0017 34 1 0.0552 4.8004 0.0020 35 1 -1.7354 9.9933 1.6415 36 1 -2.4812 8.3849 1.4838 37 1 -0.9602 8.5758 2.3884 38 1 0.8497 11.0712 1.4957 39 1 1.7276 11.0718 -0.0527 40 1 -0.0304 11.3497 -0.0262 41 1 3.8233 4.6401 -0.0122 42 1 5.1520 2.5741 -0.0024 43 1 6.3399 -2.8270 0.2975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857216830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:59 Heat of formation + Delta-G solvation = -11.559275 kcal Electronic energy + Delta-G solvation = -29554.067559 eV Core-core repulsion = 25183.053342 eV Total energy + Delta-G solvation = -4371.014217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.55697 -39.71083 -39.02636 -37.66551 -37.21766 -36.52869 -35.83873 -33.22298 -32.38804 -31.54755 -29.76783 -29.29981 -27.51215 -26.50481 -25.58076 -25.23303 -23.44241 -22.11609 -21.78308 -21.05282 -19.96900 -18.24196 -17.85592 -17.68572 -17.33135 -16.81876 -16.32080 -15.66621 -15.59921 -15.21931 -15.20678 -14.91683 -14.84649 -14.65992 -14.07304 -13.99682 -13.92871 -13.59019 -13.44711 -13.25259 -12.99175 -12.87628 -12.59094 -12.44436 -12.32033 -11.96831 -11.75517 -11.59211 -11.52736 -11.12893 -11.03925 -10.85550 -10.63330 -10.63249 -10.49331 -9.64611 -9.53397 -9.35291 -9.31905 -8.88485 -7.99761 -7.00071 -6.60882 -4.12302 1.04026 1.35535 1.53479 2.14925 2.54707 2.59986 3.05644 3.08684 3.13917 3.16840 3.51662 3.85314 3.94177 4.14890 4.34875 4.45412 4.49897 4.54932 4.89469 4.95221 5.00100 5.02602 5.06765 5.08221 5.23228 5.37437 5.46655 5.50497 5.54788 5.56233 5.79168 5.83050 5.89585 6.04919 6.09211 6.24766 6.46534 6.67684 6.78309 6.86850 7.02819 7.11555 7.20600 7.47341 7.52152 7.80055 8.07240 8.18826 8.82480 9.49638 10.54680 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.002400 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.513243 B =11663.367359 C =13347.199885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.126 4.126 5 C -0.156 4.156 6 C 0.172 3.828 7 N -0.274 5.274 8 N -0.433 5.433 9 C 0.497 3.503 10 O -0.469 6.469 11 C 0.090 3.910 12 H 0.127 0.873 13 C -0.149 4.149 14 N -0.628 5.628 15 C 0.124 3.876 16 C 0.719 3.281 17 O -0.515 6.515 18 C -0.033 4.033 19 C -0.229 4.229 20 C 0.155 3.845 21 O -0.145 6.145 22 C -0.389 4.389 23 H 0.099 0.901 24 C 0.042 3.958 25 N -0.844 5.844 26 Si 0.945 3.055 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.264 1.264 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.053 20.260 0.904 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.031 4.031 7 N -0.079 5.079 8 N -0.260 5.260 9 C 0.283 3.717 10 O -0.341 6.341 11 C -0.019 4.019 12 H 0.145 0.855 13 C -0.207 4.207 14 N -0.370 5.370 15 C -0.017 4.017 16 C 0.421 3.579 17 O -0.385 6.385 18 C -0.054 4.054 19 C -0.248 4.248 20 C 0.097 3.903 21 O -0.045 6.045 22 C -0.464 4.464 23 H 0.116 0.884 24 C -0.165 4.165 25 N -0.476 5.476 26 Si 0.769 3.231 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.188 1.188 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.797 19.841 0.824 24.180 hybrid contribution -0.299 0.047 0.028 0.304 sum -14.097 19.888 0.852 24.392 Atomic orbital electron populations 1.22923 0.80188 1.03089 1.00433 1.86245 1.19554 1.26010 1.89771 1.17930 0.89290 0.84470 1.07716 1.20683 0.98617 0.90440 1.04959 1.17465 0.92448 0.88688 1.17456 1.25289 1.00105 0.90420 0.87305 1.75646 1.18197 0.90770 1.23276 1.47223 1.06083 1.07538 1.65114 1.21770 0.82786 0.91875 0.75238 1.90717 1.55576 1.41469 1.46299 1.22176 0.87193 0.89650 1.02870 0.85517 1.21934 1.00370 1.03743 0.94639 1.47557 1.05003 1.06809 1.77597 1.21504 1.03246 0.74598 1.02330 1.15228 0.85448 0.79074 0.78194 1.90980 1.12517 1.81916 1.53125 1.21000 0.92273 0.97964 0.94136 1.20871 1.00896 0.90567 1.12503 1.18885 0.88267 0.87654 0.95458 1.84009 1.19786 1.25897 1.74811 1.21552 0.78298 0.95208 1.51388 0.88351 1.25419 1.00972 0.94136 0.96016 1.70073 1.36697 0.97825 1.43024 0.85636 0.79712 0.78670 0.79064 1.19591 1.20064 1.18828 0.93418 0.88970 0.93418 0.85664 0.83904 0.90199 0.89680 0.91448 0.91926 0.89765 0.90186 0.85760 0.84300 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.34 10.28 -34.22 -0.35 -6.70 16 3 C 0.05 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.13 -2.26 8.77 -39.03 -0.34 -2.60 16 5 C -0.16 -2.85 5.87 -105.02 -0.62 -3.46 16 6 C 0.17 2.87 10.27 -14.70 -0.15 2.72 16 7 N -0.27 -4.82 10.57 32.14 0.34 -4.48 16 8 N -0.43 -6.52 3.67 -15.71 -0.06 -6.58 16 9 C 0.50 6.07 7.54 -10.40 -0.08 5.99 16 10 O -0.47 -6.45 15.08 5.58 0.08 -6.37 16 11 C 0.09 0.68 4.04 -68.20 -0.28 0.40 16 12 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.15 -0.78 9.46 37.16 0.35 -0.43 16 14 N -0.63 -5.74 3.14 -180.27 -0.57 -6.31 16 15 C 0.12 0.65 11.00 59.85 0.66 1.31 16 16 C 0.72 10.33 8.46 -88.01 -0.74 9.59 16 17 O -0.52 -9.28 17.58 5.33 0.09 -9.19 16 18 C -0.03 -0.65 9.57 -39.17 -0.37 -1.02 16 19 C -0.23 -4.94 9.14 -39.49 -0.36 -5.30 16 20 C 0.16 3.73 6.67 -38.83 -0.26 3.47 16 21 O -0.15 -4.09 9.53 -14.26 -0.14 -4.22 16 22 C -0.39 -10.54 9.48 30.88 0.29 -10.24 16 23 H 0.10 2.44 5.19 -52.49 -0.27 2.17 16 24 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 25 N -0.84 -24.06 13.67 55.48 0.76 -23.30 16 26 Si 0.95 19.88 29.55 -169.99 -5.02 14.85 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 29 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 30 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.13 1.84 6.28 -52.49 -0.33 1.51 16 34 H 0.14 2.21 5.12 -52.49 -0.27 1.94 16 35 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.12 2.32 7.54 -52.49 -0.40 1.92 16 42 H 0.14 2.94 5.62 -52.49 -0.29 2.64 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -35.17 375.06 -5.34 -40.51 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.87 Total: 2.44 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.27 Total: 3.69 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.47 Total: -40.67 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.31 Total: -26.48 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.17 -5.34 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857216830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.948 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds