Wall clock time and date at job start Wed Apr 1 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35956 * 117.00441 * 2 1 4 4 C 1.38190 * 120.00269 * 0.02562 * 3 2 1 5 5 C 1.39761 * 119.84948 * 180.02562 * 4 3 2 6 6 C 1.47364 * 120.06068 * 180.02562 * 5 4 3 7 7 N 1.29801 * 119.99839 * 180.02562 * 6 5 4 8 8 N 1.40104 * 119.99688 * 185.06807 * 7 6 5 9 9 C 1.35113 * 124.14026 * 354.71981 * 8 7 6 10 10 O 1.21256 * 127.33408 * 359.97438 * 9 8 7 11 11 C 1.51581 * 105.50927 * 180.02562 * 9 8 7 12 12 H 1.09002 * 110.59967 * 118.47844 * 11 9 8 13 13 C 1.53006 * 110.59891 * 241.27249 * 11 9 8 14 14 N 1.47309 * 103.72949 * 359.87557 * 11 9 8 15 15 C 1.46507 * 126.69118 * 180.02562 * 14 11 9 16 16 C 1.33798 * 124.17439 * 174.57775 * 8 7 6 17 17 O 1.21541 * 123.77406 * 0.03884 * 16 8 7 18 18 C 1.39822 * 119.87240 * 0.27620 * 5 4 3 19 19 C 1.37756 * 120.01610 * 359.44210 * 18 5 4 20 20 C 1.38963 * 120.14428 * 0.55967 * 19 18 5 21 21 O 1.35686 * 119.93824 * 179.69639 * 20 19 18 22 22 C 1.34793 * 117.00111 * 5.61647 * 21 20 19 23 23 H 1.08001 * 119.99478 * 354.93507 * 22 21 20 24 24 C 1.38630 * 120.00486 * 174.93727 * 22 21 20 25 25 N 1.31574 * 119.99785 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00204 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47040 * 89.99632 * 26 24 22 28 28 H 1.48503 * 109.47119 * 209.99711 * 26 24 22 29 29 H 1.48493 * 109.46911 * 330.00038 * 26 24 22 30 30 H 1.08998 * 109.46937 * 59.99550 * 1 2 3 31 31 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46372 * 299.99853 * 1 2 3 33 33 H 1.08001 * 120.07600 * 0.04407 * 4 3 2 34 34 H 1.07998 * 119.99952 * 359.97438 * 6 5 4 35 35 H 1.09001 * 109.46690 * 176.46739 * 13 11 9 36 36 H 1.08992 * 109.47107 * 296.46634 * 13 11 9 37 37 H 1.09001 * 109.46933 * 56.47307 * 13 11 9 38 38 H 1.08997 * 109.47268 * 90.00083 * 15 14 11 39 39 H 1.08998 * 109.46978 * 210.00263 * 15 14 11 40 40 H 1.09000 * 109.46775 * 329.99990 * 15 14 11 41 41 H 1.08002 * 119.99006 * 179.70350 * 18 5 4 42 42 H 1.08000 * 119.93142 * 180.27797 * 19 18 5 43 43 H 0.96998 * 119.99826 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2938 2.3704 0.0005 5 6 1.9318 3.6139 0.0000 6 6 1.1339 4.8529 0.0011 7 7 1.7276 6.0071 0.0001 8 7 0.9734 7.1828 0.1084 9 6 -0.3772 7.2194 0.1152 10 8 -1.1388 6.2795 0.0317 11 6 -0.7424 8.6846 0.2479 12 1 -1.3093 9.0188 -0.6210 13 6 -1.5370 8.9270 1.5328 14 7 0.5622 9.3659 0.3090 15 6 0.7920 10.8069 0.4399 16 6 1.5016 8.4070 0.2205 17 8 2.6966 8.6281 0.2395 18 6 3.3284 3.6801 -0.0069 19 6 4.0733 2.5214 -0.0016 20 6 3.4397 1.2845 -0.0011 21 8 4.1775 0.1458 -0.0020 22 6 5.5135 0.2821 0.1141 23 1 5.9573 1.2667 0.1200 24 6 6.3179 -0.8415 0.2258 25 7 5.7772 -2.0409 0.2190 26 14 8.1693 -0.6524 0.3874 27 1 8.5333 -0.5543 1.8237 28 1 8.8417 -1.8320 -0.2142 29 1 8.6046 0.5792 -0.3188 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 0.2152 2.3154 0.0017 34 1 0.0552 4.8004 0.0020 35 1 -1.7354 9.9933 1.6415 36 1 -2.4812 8.3849 1.4838 37 1 -0.9602 8.5758 2.3884 38 1 0.8497 11.0712 1.4957 39 1 1.7276 11.0718 -0.0527 40 1 -0.0304 11.3497 -0.0262 41 1 3.8233 4.6401 -0.0122 42 1 5.1520 2.5741 -0.0024 43 1 6.3399 -2.8270 0.2975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857216830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:57 Heat of formation + Delta-G solvation = -36.596421 kcal Electronic energy + Delta-G solvation = -29555.153251 eV Core-core repulsion = 25183.053342 eV Total energy + Delta-G solvation = -4372.099909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.54729 -41.35673 -40.09104 -39.33998 -38.55410 -37.63051 -37.20387 -34.60834 -34.07986 -32.16981 -31.37445 -30.76513 -28.46448 -27.70488 -27.33574 -26.14914 -24.78440 -23.38006 -23.05846 -22.28109 -21.20990 -19.98982 -19.32162 -18.96756 -18.43954 -17.85515 -17.68546 -17.05845 -16.71065 -16.68075 -16.35352 -16.33051 -15.78535 -15.73305 -15.60397 -15.52617 -15.31023 -15.05683 -14.78812 -14.05572 -13.95342 -13.82349 -13.58567 -13.51277 -13.25808 -13.12054 -13.03102 -12.91980 -12.84477 -12.67220 -12.61281 -12.21983 -12.08215 -11.99007 -11.81220 -11.43281 -11.01074 -10.65141 -10.52929 -10.10288 -9.58023 -8.70426 -8.50917 -6.15225 -0.35485 0.31476 0.48909 0.50128 1.15070 1.36206 1.46657 1.53684 1.79527 1.95059 2.15308 2.52561 2.67838 2.76690 3.07616 3.14036 3.30376 3.57708 3.70923 3.83003 4.00519 4.04440 4.19975 4.29246 4.35947 4.48122 4.52366 4.59466 4.61907 4.68730 4.71402 4.76019 4.83337 4.86660 4.93285 5.06781 5.14659 5.23602 5.28637 5.38005 5.48939 5.77065 5.82715 5.88916 5.92935 6.36227 6.58167 6.92118 7.04056 7.68335 8.70587 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.002400 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.513243 B =11663.367359 C =13347.199885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.045 3.955 4 C -0.109 4.109 5 C -0.129 4.129 6 C 0.176 3.824 7 N -0.292 5.292 8 N -0.445 5.445 9 C 0.490 3.510 10 O -0.484 6.484 11 C 0.102 3.898 12 H 0.170 0.830 13 C -0.144 4.144 14 N -0.609 5.609 15 C 0.114 3.886 16 C 0.706 3.294 17 O -0.565 6.565 18 C -0.045 4.045 19 C -0.222 4.222 20 C 0.117 3.883 21 O -0.203 6.203 22 C -0.417 4.417 23 H 0.107 0.893 24 C -0.017 4.017 25 N -0.909 5.909 26 Si 1.019 2.981 27 H -0.263 1.263 28 H -0.269 1.269 29 H -0.252 1.252 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.562 24.717 1.045 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C -0.001 4.001 4 C -0.130 4.130 5 C -0.133 4.133 6 C -0.030 4.030 7 N -0.095 5.095 8 N -0.274 5.274 9 C 0.279 3.721 10 O -0.356 6.356 11 C -0.005 4.005 12 H 0.187 0.813 13 C -0.202 4.202 14 N -0.349 5.349 15 C -0.025 4.025 16 C 0.408 3.592 17 O -0.440 6.440 18 C -0.066 4.066 19 C -0.242 4.242 20 C 0.063 3.937 21 O -0.107 6.107 22 C -0.492 4.492 23 H 0.124 0.876 24 C -0.217 4.217 25 N -0.545 5.545 26 Si 0.838 3.162 27 H -0.187 1.187 28 H -0.194 1.194 29 H -0.176 1.176 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.406 24.410 0.968 29.996 hybrid contribution 0.271 -0.784 -0.020 0.830 sum -17.134 23.626 0.948 29.200 Atomic orbital electron populations 1.23340 0.76832 1.05190 1.02380 1.86213 1.23168 1.26197 1.89778 1.18181 0.88756 0.85856 1.07279 1.21036 1.00486 0.88812 1.02639 1.17807 0.92149 0.89985 1.13322 1.25154 1.00468 0.89380 0.87958 1.75361 1.21287 0.92023 1.20877 1.47326 1.07445 1.06766 1.65854 1.22561 0.81300 0.94122 0.74109 1.90698 1.55384 1.42723 1.46785 1.22471 0.86592 0.85499 1.05947 0.81338 1.21998 0.99817 1.06130 0.92210 1.47833 1.04427 1.07304 1.75377 1.21915 1.04551 0.72311 1.03721 1.15625 0.85660 0.79625 0.78264 1.90945 1.14732 1.82570 1.55708 1.21085 0.93069 0.97409 0.95004 1.20955 1.01023 0.90703 1.11519 1.19505 0.89757 0.87732 0.96697 1.84001 1.20191 1.27567 1.78970 1.21961 0.78806 0.95925 1.52546 0.87594 1.26632 1.06053 0.93518 0.95450 1.70209 1.38554 0.98765 1.46994 0.84578 0.73188 0.79050 0.79368 1.18745 1.19405 1.17572 0.91256 0.87156 0.91324 0.81402 0.82007 0.86772 0.88643 0.93114 0.90517 0.91034 0.85826 0.84955 0.84776 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -14.48 10.28 -79.08 -0.81 -15.29 16 3 C 0.04 1.93 6.70 22.57 0.15 2.09 16 4 C -0.11 -3.71 8.77 22.63 0.20 -3.51 16 5 C -0.13 -4.50 5.87 -20.12 -0.12 -4.62 16 6 C 0.18 5.46 10.27 87.40 0.90 6.35 16 7 N -0.29 -9.81 10.57 -52.23 -0.55 -10.36 16 8 N -0.45 -12.47 3.67 -440.65 -1.62 -14.09 16 9 C 0.49 10.28 7.54 87.89 0.66 10.95 16 10 O -0.48 -11.56 15.08 -2.96 -0.04 -11.60 16 11 C 0.10 1.03 4.04 44.37 0.18 1.21 16 12 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 13 C -0.14 -0.74 9.46 71.98 0.68 -0.06 16 14 N -0.61 -8.85 3.14 -842.67 -2.65 -11.50 16 15 C 0.11 0.72 11.00 127.77 1.40 2.12 16 16 C 0.71 19.03 8.46 179.44 1.52 20.54 16 17 O -0.57 -20.21 17.58 -3.84 -0.07 -20.27 16 18 C -0.05 -1.77 9.57 22.54 0.22 -1.55 16 19 C -0.22 -10.04 9.14 22.33 0.20 -9.83 16 20 C 0.12 5.93 6.67 22.76 0.15 6.08 16 21 O -0.20 -12.34 9.53 -7.68 -0.07 -12.41 16 22 C -0.42 -24.28 9.48 67.91 0.64 -23.64 16 23 H 0.11 5.64 5.19 -2.91 -0.02 5.63 16 24 C -0.02 -0.98 5.49 84.83 0.47 -0.52 16 25 N -0.91 -55.73 13.67 21.61 0.30 -55.43 16 26 Si 1.02 42.92 29.55 68.60 2.03 44.95 16 27 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 28 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 29 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 30 H 0.07 1.55 7.66 -2.39 -0.02 1.54 16 31 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 33 H 0.17 4.24 6.28 -2.91 -0.02 4.23 16 34 H 0.16 4.44 5.12 -2.91 -0.01 4.42 16 35 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.07 0.70 8.03 -2.39 -0.02 0.68 16 40 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.13 4.96 7.54 -2.91 -0.02 4.94 16 42 H 0.13 6.05 5.62 -2.91 -0.02 6.03 16 43 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -86.60 375.06 5.95 -80.66 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.07 Total: 18.17 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 8.37 Total: 7.18 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -4.52 Total: -91.38 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -1.00 Total: -59.58 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -86.60 5.95 -80.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857216830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.059 kcal (2) G-P(sol) polarization free energy of solvation -86.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds