Wall clock time and date at job start Wed Apr 1 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47386 * 2 1 4 4 C 1.53002 * 109.47008 * 119.99993 * 2 1 3 5 5 O 1.42900 * 109.47010 * 55.00326 * 4 2 1 6 6 C 1.42900 * 114.00110 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47209 * 179.97438 * 6 5 4 8 8 F 1.39896 * 109.47562 * 59.99818 * 7 6 5 9 9 F 1.39909 * 109.47057 * 180.02562 * 7 6 5 10 10 F 1.39904 * 109.47379 * 299.99712 * 7 6 5 11 11 N 1.46504 * 109.47327 * 240.00056 * 2 1 3 12 12 C 1.34771 * 120.00074 * 84.99643 * 11 2 1 13 13 O 1.21586 * 120.00076 * 0.02562 * 12 11 2 14 14 N 1.34783 * 120.00389 * 180.02562 * 12 11 2 15 15 C 1.39458 * 120.00088 * 175.45801 * 14 12 11 16 16 C 1.38640 * 119.64590 * 186.28776 * 15 14 12 17 17 C 1.40820 * 118.67468 * 179.97438 * 16 15 14 18 18 C 1.41550 * 120.99781 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99975 * 201.14479 * 18 17 16 20 20 C 1.40033 * 120.00087 * 21.14558 * 18 17 16 21 21 N 1.30751 * 119.99558 * 12.10954 * 20 18 17 22 22 Si 1.86790 * 119.99995 * 192.11039 * 20 18 17 23 23 H 1.48501 * 109.47407 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47262 * 120.00031 * 22 20 18 25 25 H 1.48502 * 109.47364 * 239.99760 * 22 20 18 26 26 C 1.41159 * 118.00391 * 0.02562 * 17 16 15 27 27 C 1.36589 * 119.13136 * 359.97438 * 26 17 16 28 28 N 1.32073 * 121.25536 * 359.74547 * 27 26 17 29 29 H 1.08991 * 109.47152 * 300.00060 * 1 2 3 30 30 H 1.09005 * 109.47057 * 60.00290 * 1 2 3 31 31 H 1.09003 * 109.46942 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47219 * 294.99873 * 4 2 1 33 33 H 1.09005 * 109.46995 * 174.99467 * 4 2 1 34 34 H 1.09001 * 109.46935 * 299.99846 * 6 5 4 35 35 H 1.08996 * 109.47145 * 59.99439 * 6 5 4 36 36 H 0.97003 * 120.00014 * 265.00702 * 11 2 1 37 37 H 0.96999 * 119.99277 * 355.46448 * 14 12 11 38 38 H 1.08002 * 120.66140 * 359.97438 * 16 15 14 39 39 H 0.96997 * 119.99163 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.43509 * 179.97438 * 26 17 16 41 41 H 1.07999 * 119.37286 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.4702 -2.0304 1.3094 6 6 1.8845 -2.7930 2.4447 7 6 1.2161 -4.1687 2.4064 8 9 1.5893 -4.8361 1.2349 9 9 1.6212 -4.9151 3.5182 10 9 -0.1740 -4.0127 2.4315 11 7 2.0184 -0.6906 -1.1962 12 6 2.1471 -0.0183 -2.3571 13 8 1.8583 1.1615 -2.4117 14 7 2.5959 -0.6537 -3.4578 15 6 2.6395 0.0157 -4.6804 16 6 2.9771 -0.6796 -5.8313 17 6 3.0143 0.0165 -7.0549 18 6 3.3534 -0.6447 -8.2597 19 1 3.7094 -0.0760 -9.1059 20 6 3.2271 -2.0361 -8.3543 21 7 2.5810 -2.6981 -7.4303 22 14 3.9818 -2.9462 -9.8004 23 1 4.6546 -1.9749 -10.7000 24 1 4.9766 -3.9296 -9.3018 25 1 2.9147 -3.6578 -10.5489 26 6 2.7045 1.3936 -7.0437 27 6 2.3830 1.9932 -5.8593 28 7 2.3525 1.3082 -4.7305 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 3.1263 -0.7996 1.2056 34 1 2.9675 -2.9142 2.4254 35 1 1.5933 -2.2732 3.3574 36 1 2.2490 -1.6318 -1.1527 37 1 2.8885 -1.5767 -3.3994 38 1 3.2070 -1.7341 -5.7903 39 1 2.4939 -3.6620 -7.4957 40 1 2.7214 1.9656 -7.9596 41 1 2.1457 3.0467 -5.8461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871723883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:04:30 Heat of formation + Delta-G solvation = -188.336765 kcal Electronic energy + Delta-G solvation = -29917.489345 eV Core-core repulsion = 24996.952740 eV Total energy + Delta-G solvation = -4920.536604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.43910 -48.00882 -47.88139 -39.94532 -38.86346 -37.91513 -35.32908 -34.18176 -33.69885 -31.26998 -30.42974 -29.83959 -28.18309 -26.62726 -25.98645 -23.69835 -22.58733 -21.84076 -20.84682 -20.05969 -18.97563 -18.96906 -18.42616 -17.85342 -17.66022 -16.93394 -16.45674 -15.97380 -15.33235 -14.94959 -14.86675 -14.80320 -14.63405 -14.47775 -14.35344 -14.13959 -14.06643 -14.06086 -13.94240 -13.59187 -13.29286 -12.93349 -12.73478 -12.59527 -12.55612 -12.11889 -12.07257 -11.56565 -11.41779 -11.14552 -11.11127 -10.87631 -10.39733 -10.25589 -10.06954 -9.75294 -9.54777 -9.37340 -8.81677 -7.95519 -7.69703 -6.96455 -6.73093 -4.60910 2.04058 2.72108 2.82565 2.87573 3.02313 3.05182 3.07722 3.27465 3.40539 3.57887 3.85316 3.89213 4.03800 4.45279 4.50389 4.56014 4.60472 4.72385 4.79104 4.93892 5.31144 5.41858 5.70812 5.75301 5.92501 6.03785 6.29084 6.34634 6.58348 6.66464 6.76844 6.84513 6.96525 7.19963 7.33813 7.48241 7.53407 7.91299 8.14595 8.43511 8.50483 8.76475 8.78564 9.22232 9.77873 10.08195 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.002363 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.359858 B =11846.813067 C =13704.112110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.104 0.896 4 C 0.056 3.944 5 O -0.367 6.367 6 C 0.018 3.982 7 C 0.461 3.539 8 F -0.174 7.174 9 F -0.179 7.179 10 F -0.175 7.175 11 N -0.749 5.749 12 C 0.692 3.308 13 O -0.535 6.535 14 N -0.667 5.667 15 C 0.354 3.646 16 C -0.250 4.250 17 C 0.139 3.861 18 C -0.449 4.449 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.790 5.790 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.285 4.285 27 C 0.118 3.882 28 N -0.554 5.554 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.395 0.605 37 H 0.404 0.596 38 H 0.139 0.861 39 H 0.280 0.720 40 H 0.100 0.900 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 -4.697 20.518 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.064 3.936 3 H 0.122 0.878 4 C -0.021 4.021 5 O -0.286 6.286 6 C -0.061 4.061 7 C 0.406 3.594 8 F -0.155 7.155 9 F -0.161 7.161 10 F -0.157 7.157 11 N -0.407 5.407 12 C 0.392 3.608 13 O -0.406 6.406 14 N -0.315 5.315 15 C 0.128 3.872 16 C -0.276 4.276 17 C 0.130 3.870 18 C -0.480 4.480 19 H 0.100 0.900 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.739 3.261 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.199 1.199 26 C -0.309 4.309 27 C -0.035 4.035 28 N -0.273 5.273 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.229 0.771 37 H 0.238 0.762 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.622 -3.468 21.221 21.512 hybrid contribution 0.757 -2.102 -1.152 2.513 sum 0.135 -5.569 20.069 20.828 Atomic orbital electron populations 1.22130 0.94795 1.02773 1.02391 1.20759 0.94974 0.96369 0.81486 0.87775 1.23069 0.97905 0.82165 0.98947 1.87952 1.70292 1.27621 1.42778 1.23497 1.00545 0.88889 0.93119 1.20194 0.77471 0.87920 0.73783 1.93240 1.91048 1.82728 1.48495 1.93211 1.90476 1.78791 1.53580 1.93229 1.30676 1.95723 1.96056 1.45231 1.72917 1.13650 1.08932 1.16092 0.79199 0.85482 0.80035 1.91005 1.53465 1.13115 1.83005 1.42550 1.66802 1.15580 1.06542 1.17992 0.96626 0.89486 0.83121 1.21786 1.13755 1.01975 0.90094 1.17592 0.86302 0.90549 0.92512 1.19644 1.38277 0.91579 0.98489 0.90037 1.25988 0.92788 0.98150 0.97512 1.69753 1.29874 1.09471 1.32474 0.86160 0.79500 0.79514 0.80967 1.18343 1.19674 1.19880 1.21637 1.14382 0.97000 0.97925 1.21459 0.96382 0.97741 0.87941 1.67200 1.24642 1.06356 1.29083 0.92155 0.91569 0.91717 0.90953 0.91655 0.88525 0.88588 0.77126 0.76175 0.84339 0.90864 0.88144 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.29 37.16 0.35 -1.55 16 2 C 0.17 1.90 2.98 -67.93 -0.20 1.70 16 3 H 0.10 1.28 7.58 -51.93 -0.39 0.89 16 4 C 0.06 0.40 5.68 37.16 0.21 0.61 16 5 O -0.37 -3.01 9.08 -35.23 -0.32 -3.33 16 6 C 0.02 0.10 5.90 37.15 0.22 0.32 16 7 C 0.46 3.67 3.32 37.15 0.12 3.79 16 8 F -0.17 -1.73 17.26 2.25 0.04 -1.69 16 9 F -0.18 -1.38 17.32 2.25 0.04 -1.34 16 10 F -0.18 -1.70 17.26 2.25 0.04 -1.66 16 11 N -0.75 -10.22 5.06 -58.67 -0.30 -10.52 16 12 C 0.69 13.30 8.49 -86.92 -0.74 12.56 16 13 O -0.53 -12.45 14.26 5.29 0.08 -12.37 16 14 N -0.67 -13.37 5.39 -15.86 -0.09 -13.45 16 15 C 0.35 8.72 7.42 -154.68 -1.15 7.57 16 16 C -0.25 -6.42 8.67 -38.46 -0.33 -6.75 16 17 C 0.14 3.68 5.65 -106.55 -0.60 3.08 16 18 C -0.45 -11.56 9.15 -37.65 -0.34 -11.91 16 19 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 20 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 21 N -0.79 -19.43 10.50 55.55 0.58 -18.84 16 22 Si 0.91 17.96 29.58 -169.99 -5.03 12.93 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.29 -7.09 9.85 -39.07 -0.38 -7.47 16 27 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16 28 N -0.55 -14.39 7.86 -12.76 -0.10 -14.49 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.40 4.58 8.40 -40.82 -0.34 4.23 16 37 H 0.40 6.71 8.72 -40.82 -0.36 6.35 16 38 H 0.14 3.53 5.81 -52.49 -0.30 3.22 16 39 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 40 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -32.91 366.90 -7.39 -40.30 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -4.72 Total: 12.60 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -3.15 Total: 6.34 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.10 Total: -57.30 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.24 Total: -15.71 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.12 Total: -4.70 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.91 -7.39 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871723883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.035 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds