Wall clock time and date at job start Wed Apr 1 2020 07:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46695 * 2 1 4 4 C 1.52998 * 109.46855 * 119.99740 * 2 1 3 5 5 O 1.42905 * 109.47335 * 55.00023 * 4 2 1 6 6 C 1.42900 * 114.00048 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46736 * 180.02562 * 6 5 4 8 8 F 1.39895 * 109.47466 * 60.00551 * 7 6 5 9 9 F 1.39901 * 109.47070 * 180.02562 * 7 6 5 10 10 F 1.39898 * 109.47438 * 300.00490 * 7 6 5 11 11 N 1.46499 * 109.47152 * 239.99854 * 2 1 3 12 12 C 1.34775 * 119.99934 * 84.99836 * 11 2 1 13 13 O 1.21582 * 119.99786 * 0.02562 * 12 11 2 14 14 N 1.34769 * 119.99995 * 179.97438 * 12 11 2 15 15 C 1.39244 * 120.00084 * 185.14828 * 14 12 11 16 16 C 1.39687 * 119.57945 * 174.62289 * 15 14 12 17 17 C 1.38641 * 119.50021 * 180.02562 * 16 15 14 18 18 C 1.38356 * 118.66970 * 359.97438 * 17 16 15 19 19 C 1.40570 * 119.13166 * 0.02562 * 18 17 16 20 20 C 1.41331 * 119.78983 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99562 * 0.02562 * 20 19 18 22 22 C 1.40019 * 120.00182 * 179.97438 * 20 19 18 23 23 N 1.30743 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00035 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47041 * 60.00086 * 24 22 20 26 26 H 1.48499 * 109.46960 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46902 * 300.00522 * 24 22 20 28 28 N 1.31905 * 119.57569 * 354.35859 * 15 14 12 29 29 H 1.08996 * 109.47095 * 299.99926 * 1 2 3 30 30 H 1.09002 * 109.47281 * 59.99989 * 1 2 3 31 31 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47311 * 174.99900 * 4 2 1 33 33 H 1.09001 * 109.47449 * 295.00255 * 4 2 1 34 34 H 1.08997 * 109.47641 * 300.00645 * 6 5 4 35 35 H 1.08997 * 109.46825 * 60.00503 * 6 5 4 36 36 H 0.96996 * 119.99533 * 265.00255 * 11 2 1 37 37 H 0.97003 * 120.00376 * 5.15637 * 14 12 11 38 38 H 1.08003 * 120.24563 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.66876 * 180.02562 * 17 16 15 40 40 H 1.07999 * 120.43112 * 179.97438 * 18 17 16 41 41 H 0.97008 * 119.99982 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -2.0303 1.3095 6 6 1.8844 -2.7928 2.4449 7 6 1.2169 -4.1690 2.4060 8 9 1.5913 -4.8360 1.2347 9 9 1.6219 -4.9154 3.5178 10 9 -0.1732 -4.0139 2.4303 11 7 2.0184 -0.6906 -1.1961 12 6 2.1471 -0.0183 -2.3571 13 8 1.8583 1.1615 -2.4116 14 7 2.5968 -0.6535 -3.4574 15 6 2.8318 0.0631 -4.6279 16 6 3.4036 -0.5809 -5.7276 17 6 3.6374 0.1344 -6.8921 18 6 3.2936 1.4741 -6.9285 19 6 2.7212 2.0649 -5.7886 20 6 2.3652 3.4325 -5.8104 21 1 2.5328 4.0200 -6.7011 22 6 1.7943 4.0254 -4.6776 23 7 1.5902 3.3139 -3.6000 24 14 1.3245 5.8332 -4.7062 25 1 0.3227 6.0674 -5.7771 26 1 0.7447 6.2147 -3.3933 27 1 2.5330 6.6546 -4.9707 28 7 2.5067 1.3402 -4.6857 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7995 1.2057 33 1 1.7516 -0.1583 2.1370 34 1 2.9674 -2.9140 2.4258 35 1 1.5931 -2.2730 3.3576 36 1 2.2490 -1.6318 -1.1525 37 1 2.7567 -1.6100 -3.4340 38 1 3.6625 -1.6279 -5.6709 39 1 4.0782 -0.3447 -7.7538 40 1 3.4635 2.0583 -7.8208 41 1 1.1950 3.7248 -2.8151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:04:38 Heat of formation + Delta-G solvation = -165.275462 kcal Electronic energy + Delta-G solvation = -30545.903114 eV Core-core repulsion = 25626.366523 eV Total energy + Delta-G solvation = -4919.536591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.42073 -47.98964 -47.86339 -39.65754 -38.70036 -37.61296 -35.10119 -33.87902 -32.93975 -31.08680 -30.22569 -29.77529 -28.54073 -26.49454 -25.46013 -23.66094 -22.57852 -21.34364 -20.71710 -19.77658 -18.94881 -18.92938 -18.29430 -17.91621 -17.08321 -16.86227 -16.37961 -16.02053 -15.12110 -14.81169 -14.73279 -14.61043 -14.42846 -14.34367 -14.28708 -14.16932 -14.04663 -14.04141 -13.63222 -13.35812 -13.04714 -12.84943 -12.57079 -12.43375 -12.02367 -11.93899 -11.82309 -11.37377 -11.10186 -10.94352 -10.92237 -10.61585 -10.41720 -10.30081 -9.90592 -9.64763 -9.07291 -8.97831 -8.45783 -7.90418 -7.16382 -6.89074 -6.06492 -4.34456 2.08879 2.89132 2.94187 3.17576 3.18801 3.21193 3.27506 3.31656 3.44462 3.61186 4.07296 4.10306 4.26722 4.52032 4.57740 4.69856 4.77243 4.93315 5.00128 5.08202 5.50370 5.60079 5.88020 6.09544 6.11930 6.17584 6.39862 6.51211 6.53012 6.66792 6.85262 6.89744 7.04336 7.28527 7.42251 7.67040 7.79951 7.86497 8.22148 8.34671 8.71816 8.85213 9.11020 9.64664 10.31986 10.54246 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.002565 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.657853 B =10913.219140 C =12356.058280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.173 3.827 3 H 0.105 0.895 4 C 0.056 3.944 5 O -0.367 6.367 6 C 0.018 3.982 7 C 0.461 3.539 8 F -0.175 7.175 9 F -0.180 7.180 10 F -0.175 7.175 11 N -0.754 5.754 12 C 0.664 3.336 13 O -0.464 6.464 14 N -0.673 5.673 15 C 0.388 3.612 16 C -0.358 4.358 17 C -0.036 4.036 18 C -0.308 4.308 19 C 0.271 3.729 20 C -0.426 4.426 21 H 0.081 0.919 22 C 0.057 3.943 23 N -0.648 5.648 24 Si 0.894 3.106 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.268 1.268 28 N -0.471 5.471 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.388 0.612 37 H 0.395 0.605 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -11.676 16.380 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 H 0.122 0.878 4 C -0.020 4.020 5 O -0.286 6.286 6 C -0.061 4.061 7 C 0.407 3.593 8 F -0.156 7.156 9 F -0.161 7.161 10 F -0.157 7.157 11 N -0.414 5.414 12 C 0.363 3.637 13 O -0.328 6.328 14 N -0.321 5.321 15 C 0.148 3.852 16 C -0.384 4.384 17 C -0.060 4.060 18 C -0.331 4.331 19 C 0.146 3.854 20 C -0.456 4.456 21 H 0.099 0.901 22 C -0.173 4.173 23 N -0.266 5.266 24 Si 0.719 3.281 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.193 1.193 28 N -0.190 5.190 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.221 0.779 37 H 0.228 0.772 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.627 -10.141 17.186 19.964 hybrid contribution 0.463 -0.904 -0.470 1.120 sum -0.164 -11.045 16.716 20.036 Atomic orbital electron populations 1.22115 0.95078 1.02343 1.02371 1.20680 0.94716 0.96421 0.81471 0.87752 1.23092 0.97819 0.81943 0.99176 1.87952 1.70314 1.27761 1.42601 1.23487 1.00471 0.88847 0.93277 1.20209 0.77460 0.87967 0.73711 1.93229 1.91036 1.82775 1.48580 1.93207 1.90483 1.78814 1.53601 1.93227 1.30674 1.95738 1.96053 1.45315 1.73763 1.13318 1.09013 1.16443 0.80732 0.86434 0.80129 1.91383 1.48601 1.11027 1.81753 1.42562 1.69232 1.10444 1.09912 1.18342 0.92430 0.90981 0.83473 1.20445 1.22254 0.99400 0.96345 1.20542 0.96072 0.94036 0.95380 1.21614 1.15312 0.95494 1.00657 1.18386 0.88086 0.93054 0.85864 1.19524 1.33918 0.93315 0.98889 0.90103 1.26182 0.96131 0.99141 0.95818 1.70348 1.21716 1.34341 1.00231 0.86614 0.79541 0.83804 0.78155 1.19255 1.20470 1.19279 1.68699 1.22377 1.01935 1.25942 0.92493 0.91399 0.92093 0.91792 0.91173 0.88620 0.88645 0.77948 0.77231 0.89195 0.88679 0.88650 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.29 37.16 0.35 -1.74 16 2 C 0.17 2.18 2.98 -67.93 -0.20 1.98 16 3 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 4 C 0.06 0.47 5.68 37.16 0.21 0.68 16 5 O -0.37 -3.27 9.08 -35.23 -0.32 -3.59 16 6 C 0.02 0.11 5.90 37.16 0.22 0.33 16 7 C 0.46 3.77 3.32 37.16 0.12 3.89 16 8 F -0.17 -1.73 17.26 2.25 0.04 -1.69 16 9 F -0.18 -1.42 17.32 2.25 0.04 -1.38 16 10 F -0.18 -1.74 17.26 2.25 0.04 -1.71 16 11 N -0.75 -10.97 5.06 -58.68 -0.30 -11.27 16 12 C 0.66 13.44 8.49 -86.93 -0.74 12.70 16 13 O -0.46 -11.55 11.77 5.29 0.06 -11.48 16 14 N -0.67 -13.49 5.39 -15.79 -0.09 -13.57 16 15 C 0.39 9.58 7.43 -155.00 -1.15 8.43 16 16 C -0.36 -8.17 9.95 -38.89 -0.39 -8.56 16 17 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 18 C -0.31 -7.85 9.83 -38.66 -0.38 -8.23 16 19 C 0.27 7.71 6.55 -85.00 -0.56 7.15 16 20 C -0.43 -11.82 9.14 -37.74 -0.34 -12.16 16 21 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 22 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 23 N -0.65 -17.94 8.98 55.55 0.50 -17.44 16 24 Si 0.89 19.32 29.56 -169.99 -5.02 14.30 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 28 N -0.47 -13.34 5.74 -10.26 -0.06 -13.40 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.39 4.72 8.40 -40.82 -0.34 4.38 16 37 H 0.39 6.20 8.72 -40.82 -0.36 5.84 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -33.80 364.35 -7.81 -41.61 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.84 Total: 9.50 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.36 Total: 4.63 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.06 Total: -55.68 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.26 Total: -15.07 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.12 Total: -4.78 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.80 -7.81 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.661 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds