Wall clock time and date at job start Wed Apr 1 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46695 * 2 1 4 4 C 1.52998 * 109.46855 * 119.99740 * 2 1 3 5 5 O 1.42905 * 109.47335 * 55.00023 * 4 2 1 6 6 C 1.42900 * 114.00048 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46736 * 180.02562 * 6 5 4 8 8 F 1.39895 * 109.47466 * 60.00551 * 7 6 5 9 9 F 1.39901 * 109.47070 * 180.02562 * 7 6 5 10 10 F 1.39898 * 109.47438 * 300.00490 * 7 6 5 11 11 N 1.46499 * 109.47152 * 239.99854 * 2 1 3 12 12 C 1.34775 * 119.99934 * 84.99836 * 11 2 1 13 13 O 1.21582 * 119.99786 * 0.02562 * 12 11 2 14 14 N 1.34769 * 119.99995 * 179.97438 * 12 11 2 15 15 C 1.39244 * 120.00084 * 185.14828 * 14 12 11 16 16 C 1.39687 * 119.57945 * 174.62289 * 15 14 12 17 17 C 1.38641 * 119.50021 * 180.02562 * 16 15 14 18 18 C 1.38356 * 118.66970 * 359.97438 * 17 16 15 19 19 C 1.40570 * 119.13166 * 0.02562 * 18 17 16 20 20 C 1.41331 * 119.78983 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99562 * 0.02562 * 20 19 18 22 22 C 1.40019 * 120.00182 * 179.97438 * 20 19 18 23 23 N 1.30743 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00035 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47041 * 60.00086 * 24 22 20 26 26 H 1.48499 * 109.46960 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46902 * 300.00522 * 24 22 20 28 28 N 1.31905 * 119.57569 * 354.35859 * 15 14 12 29 29 H 1.08996 * 109.47095 * 299.99926 * 1 2 3 30 30 H 1.09002 * 109.47281 * 59.99989 * 1 2 3 31 31 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47311 * 174.99900 * 4 2 1 33 33 H 1.09001 * 109.47449 * 295.00255 * 4 2 1 34 34 H 1.08997 * 109.47641 * 300.00645 * 6 5 4 35 35 H 1.08997 * 109.46825 * 60.00503 * 6 5 4 36 36 H 0.96996 * 119.99533 * 265.00255 * 11 2 1 37 37 H 0.97003 * 120.00376 * 5.15637 * 14 12 11 38 38 H 1.08003 * 120.24563 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.66876 * 180.02562 * 17 16 15 40 40 H 1.07999 * 120.43112 * 179.97438 * 18 17 16 41 41 H 0.97008 * 119.99982 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -2.0303 1.3095 6 6 1.8844 -2.7928 2.4449 7 6 1.2169 -4.1690 2.4060 8 9 1.5913 -4.8360 1.2347 9 9 1.6219 -4.9154 3.5178 10 9 -0.1732 -4.0139 2.4303 11 7 2.0184 -0.6906 -1.1961 12 6 2.1471 -0.0183 -2.3571 13 8 1.8583 1.1615 -2.4116 14 7 2.5968 -0.6535 -3.4574 15 6 2.8318 0.0631 -4.6279 16 6 3.4036 -0.5809 -5.7276 17 6 3.6374 0.1344 -6.8921 18 6 3.2936 1.4741 -6.9285 19 6 2.7212 2.0649 -5.7886 20 6 2.3652 3.4325 -5.8104 21 1 2.5328 4.0200 -6.7011 22 6 1.7943 4.0254 -4.6776 23 7 1.5902 3.3139 -3.6000 24 14 1.3245 5.8332 -4.7062 25 1 0.3227 6.0674 -5.7771 26 1 0.7447 6.2147 -3.3933 27 1 2.5330 6.6546 -4.9707 28 7 2.5067 1.3402 -4.6857 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7995 1.2057 33 1 1.7516 -0.1583 2.1370 34 1 2.9674 -2.9140 2.4258 35 1 1.5931 -2.2730 3.3576 36 1 2.2490 -1.6318 -1.1525 37 1 2.7567 -1.6100 -3.4340 38 1 3.6625 -1.6279 -5.6709 39 1 4.0782 -0.3447 -7.7538 40 1 3.4635 2.0583 -7.8208 41 1 1.1950 3.7248 -2.8151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:04:37 Heat of formation + Delta-G solvation = -187.822065 kcal Electronic energy + Delta-G solvation = -30546.880808 eV Core-core repulsion = 25626.366523 eV Total energy + Delta-G solvation = -4920.514285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.06923 -48.62637 -48.55888 -41.15687 -39.82936 -39.05889 -36.38658 -35.62098 -34.78160 -32.35771 -32.06184 -30.70666 -30.12714 -27.44214 -27.26853 -24.23637 -24.18582 -23.16024 -22.06863 -21.25455 -19.80937 -19.59002 -19.57676 -19.01773 -18.47910 -18.05579 -17.42644 -16.95873 -16.49167 -16.23481 -16.14724 -15.77369 -15.60671 -15.45817 -15.35342 -15.15331 -15.00725 -14.73990 -14.72245 -14.62466 -14.46522 -14.37088 -13.93310 -13.71904 -13.34989 -13.11091 -12.84411 -12.73689 -12.70030 -12.53667 -12.28531 -12.25657 -11.96243 -11.75808 -11.45705 -10.87452 -10.82539 -10.77447 -9.87842 -9.78333 -9.06993 -8.74424 -7.98341 -6.37451 1.00699 1.31616 1.41612 1.51593 1.52958 1.56379 1.86537 2.29645 2.33383 2.62789 2.89324 3.05284 3.08016 3.41008 3.47749 3.85852 4.10427 4.13709 4.18612 4.20005 4.38398 4.42564 4.51544 4.64899 4.75685 4.85123 4.88387 4.99497 5.08666 5.09805 5.31505 5.40000 5.69488 5.74568 5.88725 5.89589 5.96093 6.08311 6.35483 6.46466 6.85710 7.11203 7.31355 8.07798 8.41957 8.62211 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.002565 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.657853 B =10913.219140 C =12356.058280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.167 3.833 3 H 0.083 0.917 4 C 0.069 3.931 5 O -0.389 6.389 6 C 0.020 3.980 7 C 0.456 3.544 8 F -0.188 7.188 9 F -0.178 7.178 10 F -0.189 7.189 11 N -0.732 5.732 12 C 0.657 3.343 13 O -0.513 6.513 14 N -0.664 5.664 15 C 0.366 3.634 16 C -0.348 4.348 17 C -0.034 4.034 18 C -0.332 4.332 19 C 0.236 3.764 20 C -0.467 4.467 21 H 0.084 0.916 22 C 0.009 3.991 23 N -0.681 5.681 24 Si 0.974 3.026 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.261 1.261 28 N -0.505 5.505 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.403 0.597 37 H 0.415 0.585 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -12.827 17.690 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.061 3.939 3 H 0.101 0.899 4 C -0.007 4.007 5 O -0.309 6.309 6 C -0.058 4.058 7 C 0.402 3.598 8 F -0.170 7.170 9 F -0.160 7.160 10 F -0.171 7.171 11 N -0.392 5.392 12 C 0.356 3.644 13 O -0.381 6.381 14 N -0.314 5.314 15 C 0.126 3.874 16 C -0.374 4.374 17 C -0.058 4.058 18 C -0.355 4.355 19 C 0.111 3.889 20 C -0.497 4.497 21 H 0.102 0.898 22 C -0.217 4.217 23 N -0.300 5.300 24 Si 0.795 3.205 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.186 1.186 28 N -0.224 5.224 29 H 0.099 0.901 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.238 0.762 37 H 0.252 0.748 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.121 0.879 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.184 -11.384 18.531 21.750 hybrid contribution 0.246 -0.788 -0.860 1.192 sum 0.430 -12.172 17.672 21.462 Atomic orbital electron populations 1.22004 0.95486 1.02017 1.01378 1.20829 0.94367 0.96186 0.82471 0.89888 1.22928 0.98377 0.81920 0.97473 1.87890 1.70864 1.27966 1.44147 1.23685 1.01607 0.87210 0.93299 1.20599 0.76969 0.88968 0.73223 1.93200 1.91076 1.83262 1.49460 1.93207 1.90371 1.78991 1.53423 1.93199 1.31978 1.95823 1.96086 1.45098 1.72427 1.13818 1.07863 1.16735 0.80295 0.86191 0.81207 1.91373 1.50607 1.13370 1.82700 1.42439 1.68834 1.11265 1.08868 1.18838 0.92394 0.90676 0.85446 1.20911 1.19976 1.01141 0.95355 1.21014 0.94856 0.93123 0.96837 1.21794 1.16331 0.97068 1.00348 1.18886 0.89003 0.93953 0.87076 1.19851 1.36009 0.93988 0.99890 0.89775 1.27029 0.95658 1.03926 0.95041 1.70554 1.22572 1.36193 1.00644 0.85411 0.79259 0.77561 0.78301 1.18728 1.19765 1.18566 1.68667 1.23556 1.03733 1.26486 0.90128 0.95724 0.91897 0.90233 0.88236 0.86136 0.85905 0.76156 0.74785 0.85237 0.84596 0.87864 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.29 71.98 0.67 -3.22 16 2 C 0.17 4.07 2.98 44.99 0.13 4.20 16 3 H 0.08 2.44 7.58 -2.39 -0.02 2.42 16 4 C 0.07 0.95 5.68 71.98 0.41 1.36 16 5 O -0.39 -5.77 9.08 -148.98 -1.35 -7.12 16 6 C 0.02 0.17 5.90 71.98 0.42 0.60 16 7 C 0.46 6.54 3.32 71.98 0.24 6.78 16 8 F -0.19 -3.46 17.26 44.97 0.78 -2.68 16 9 F -0.18 -2.47 17.32 44.97 0.78 -1.69 16 10 F -0.19 -3.50 17.26 44.97 0.78 -2.73 16 11 N -0.73 -20.84 5.06 -457.83 -2.32 -23.15 16 12 C 0.66 26.99 8.49 179.06 1.52 28.51 16 13 O -0.51 -26.68 11.77 -3.97 -0.05 -26.72 16 14 N -0.66 -26.34 5.39 -322.13 -1.74 -28.08 16 15 C 0.37 18.14 7.43 133.26 0.99 19.13 16 16 C -0.35 -15.21 9.95 22.72 0.23 -14.98 16 17 C -0.03 -1.52 10.15 22.39 0.23 -1.29 16 18 C -0.33 -17.15 9.83 22.87 0.22 -16.92 16 19 C 0.24 13.92 6.55 40.19 0.26 14.18 16 20 C -0.47 -27.00 9.14 23.46 0.21 -26.79 16 21 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 22 C 0.01 0.52 5.50 85.29 0.47 0.99 16 23 N -0.68 -39.51 8.98 21.84 0.20 -39.31 16 24 Si 0.97 41.07 29.56 68.60 2.03 43.10 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 28 N -0.51 -29.55 5.74 -186.37 -1.07 -30.62 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.58 7.56 -2.38 -0.02 1.57 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.40 9.11 8.40 -92.71 -0.78 8.33 16 37 H 0.42 12.33 8.72 -92.71 -0.81 11.52 16 38 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.27 14.73 8.29 -92.70 -0.77 13.96 16 Total: -1.00 -78.58 364.35 3.56 -75.03 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.48 Total: 31.43 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.01 Total: 12.55 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -4.93 Total: -121.16 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.40 Total: -33.84 kcal Atomic # 9 Polarization: -9.43 SS G_CDS: 2.33 Total: -7.09 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -78.58 3.56 -75.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.796 kcal (2) G-P(sol) polarization free energy of solvation -78.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds