Wall clock time and date at job start Wed Apr 1 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47376 * 2 1 4 4 C 1.50704 * 109.47116 * 240.00227 * 2 1 3 5 5 H 1.08004 * 119.99906 * 239.99725 * 4 2 1 6 6 C 1.37880 * 119.99850 * 60.00061 * 4 2 1 7 7 N 1.31516 * 120.00108 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47226 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46685 * 120.00244 * 8 6 4 11 11 H 1.48499 * 109.47332 * 239.99760 * 8 6 4 12 12 N 1.46498 * 109.47385 * 120.00328 * 2 1 3 13 13 C 1.34777 * 119.99967 * 275.00114 * 12 2 1 14 14 O 1.21274 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99791 * 179.97438 * 13 12 2 16 16 N 1.46504 * 109.46770 * 180.02562 * 15 13 12 17 17 N 1.40412 * 126.10851 * 270.01896 * 16 15 13 18 18 C 1.31189 * 108.29206 * 179.91589 * 17 16 15 19 19 C 1.50700 * 125.97514 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.47020 * 4.98030 * 19 18 17 21 21 F 1.39896 * 109.47044 * 124.97953 * 19 18 17 22 22 F 1.39901 * 109.47155 * 244.97847 * 19 18 17 23 23 C 1.38920 * 108.07196 * 0.04949 * 18 17 16 24 24 C 1.33943 * 126.11831 * 90.00239 * 16 15 13 25 25 C 1.50895 * 129.25518 * 0.12956 * 24 16 15 26 26 C 1.53579 * 107.70017 * 164.20318 * 25 24 16 27 27 O 1.42998 * 109.66153 * 47.79511 * 26 25 24 28 28 C 1.43420 * 114.40133 * 289.10837 * 27 26 25 29 29 H 1.09002 * 109.47211 * 60.00117 * 1 2 3 30 30 H 1.09005 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46908 * 299.99597 * 1 2 3 32 32 H 0.96994 * 120.00104 * 180.02562 * 7 6 4 33 33 H 0.97005 * 120.00390 * 94.99700 * 12 2 1 34 34 H 1.08993 * 109.47339 * 60.00054 * 15 13 12 35 35 H 1.09003 * 109.47276 * 299.99693 * 15 13 12 36 36 H 1.09007 * 109.80821 * 44.65631 * 25 24 16 37 37 H 1.08997 * 109.81383 * 283.76090 * 25 24 16 38 38 H 1.09001 * 109.44403 * 287.74079 * 26 25 24 39 39 H 1.08996 * 109.40580 * 167.83361 * 26 25 24 40 40 H 1.09002 * 109.76588 * 170.41054 * 28 27 26 41 41 H 1.09001 * 109.76453 * 291.12783 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1677 -1.5863 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1584 2.4116 15 6 2.6489 -0.7290 3.5876 16 7 2.6977 0.2122 4.7093 17 7 3.7907 1.0181 5.0662 18 6 3.4547 1.7248 6.1192 19 6 4.3312 2.7214 6.8331 20 9 5.5342 2.8691 6.1342 21 9 3.6758 3.9555 6.8993 22 9 4.5974 2.2646 8.1283 23 6 2.1501 1.3929 6.4626 24 6 1.7077 0.4580 5.5773 25 6 0.3245 -0.1414 5.6428 26 6 -0.2563 0.1747 7.0290 27 8 -0.0617 1.5596 7.3277 28 6 1.3005 1.9234 7.5902 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7089 1.1616 -3.4843 33 1 2.2490 -1.6319 1.1525 34 1 3.6480 -1.1215 3.3985 35 1 1.9760 -1.5508 3.8325 36 1 0.3828 -1.2211 5.5042 37 1 -0.3055 0.2976 4.8693 38 1 0.2478 -0.4327 7.7807 39 1 -1.3225 -0.0514 7.0351 40 1 1.3892 3.0087 7.6396 41 1 1.6241 1.4839 8.5338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:58 Heat of formation + Delta-G solvation = -149.348634 kcal Electronic energy + Delta-G solvation = -31211.695410 eV Core-core repulsion = 26292.849458 eV Total energy + Delta-G solvation = -4918.845952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.26873 -47.80330 -47.74520 -42.06646 -39.14593 -38.34213 -35.10950 -34.21805 -32.64224 -32.36168 -30.56407 -29.78269 -28.29258 -26.25631 -25.38209 -24.71358 -23.93636 -21.80875 -20.89624 -19.84908 -19.68530 -18.67115 -18.39868 -17.93090 -17.67388 -16.97329 -16.36134 -16.11452 -15.72130 -15.27127 -15.05793 -14.85719 -14.69787 -14.56306 -14.49571 -14.19245 -14.14960 -13.92968 -13.89518 -13.75799 -13.61565 -13.18959 -12.89938 -12.60383 -12.43362 -12.39760 -11.80429 -11.75733 -11.31877 -11.20647 -11.07386 -11.03447 -10.88986 -10.42955 -10.35196 -10.23292 -9.95770 -9.27719 -9.17572 -8.68474 -8.58212 -8.15755 -6.22647 -4.33054 1.33686 1.73202 2.00987 2.60194 2.96601 3.17316 3.25368 3.27480 3.44416 3.55778 3.73341 3.84426 4.14502 4.24614 4.26827 4.42779 4.53131 4.65489 4.83992 4.86170 5.02916 5.09391 5.11606 5.14173 5.16807 5.33443 5.50337 5.59179 5.77618 5.90342 6.54324 6.67299 6.78624 6.83493 6.98972 7.14162 7.22217 7.36642 7.55503 7.75919 8.01370 8.39148 8.60815 8.84148 9.34620 10.83357 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.002767 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.652251 B =10115.884652 C =11136.753742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.701 5.701 13 C 0.484 3.516 14 O -0.532 6.532 15 C 0.102 3.898 16 N -0.313 5.313 17 N -0.226 5.226 18 C -0.004 4.004 19 C 0.557 3.443 20 F -0.165 7.165 21 F -0.165 7.165 22 F -0.169 7.169 23 C -0.251 4.251 24 C 0.116 3.884 25 C -0.094 4.094 26 C 0.069 3.931 27 O -0.372 6.372 28 C 0.140 3.860 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.014 0.986 32 H 0.265 0.735 33 H 0.391 0.609 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -4.514 21.455 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.349 5.349 13 C 0.266 3.734 14 O -0.409 6.409 15 C -0.023 4.023 16 N -0.093 5.093 17 N -0.050 5.050 18 C -0.170 4.170 19 C 0.501 3.499 20 F -0.146 7.146 21 F -0.146 7.146 22 F -0.151 7.151 23 C -0.263 4.263 24 C -0.014 4.014 25 C -0.133 4.133 26 C -0.009 4.009 27 O -0.290 6.290 28 C 0.062 3.938 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.119 -3.730 20.362 20.731 hybrid contribution 0.322 -0.816 -0.611 1.069 sum 1.441 -4.546 19.751 20.318 Atomic orbital electron populations 1.22078 0.98192 0.99189 1.01049 1.18825 0.91146 0.94044 0.79586 0.93278 1.21211 1.32767 1.13396 0.90157 0.91897 1.24898 0.94710 0.94914 0.99159 1.69903 1.35671 1.22311 1.23998 0.86363 0.78638 0.79503 0.82421 1.19695 1.20797 1.20786 1.46508 1.64696 1.13648 1.10078 1.20368 0.80100 0.88113 0.84868 1.90765 1.50170 1.15420 1.84549 1.21884 1.06304 0.90031 0.84107 1.47674 1.08914 1.30996 1.21734 1.77654 1.08503 1.06127 1.12684 1.21417 0.95423 1.01654 0.98481 1.16860 0.77719 0.78909 0.76431 1.93245 1.46839 1.95840 1.78715 1.93236 1.81018 1.44201 1.96191 1.93223 1.94106 1.88894 1.38835 1.20103 0.95035 1.05812 1.05398 1.20759 0.92348 0.97517 0.90736 1.21196 0.89517 1.01275 1.01348 1.22614 1.01816 0.83145 0.93314 1.88060 1.25524 1.25226 1.90217 1.21064 0.79480 1.00527 0.92698 0.88957 0.95315 0.96725 0.92471 0.77643 0.85382 0.85764 0.88690 0.87789 0.92289 0.87411 0.87601 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.26 37.16 0.34 -3.12 16 2 C 0.27 6.43 2.56 -69.08 -0.18 6.26 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.32 11.32 55.43 0.63 -23.69 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.70 -13.13 5.07 -54.94 -0.28 -13.41 16 13 C 0.48 8.81 7.86 -10.99 -0.09 8.72 16 14 O -0.53 -12.47 16.09 5.56 0.09 -12.38 16 15 C 0.10 1.27 6.80 -5.19 -0.04 1.24 16 16 N -0.31 -4.66 3.08 -58.27 -0.18 -4.84 16 17 N -0.23 -3.79 12.38 33.54 0.42 -3.37 16 18 C 0.00 -0.07 6.49 -82.61 -0.54 -0.60 16 19 C 0.56 7.43 3.40 36.01 0.12 7.55 16 20 F -0.17 -2.38 17.14 2.25 0.04 -2.34 16 21 F -0.17 -2.15 16.94 2.25 0.04 -2.11 16 22 F -0.17 -1.98 17.30 2.25 0.04 -1.94 16 23 C -0.25 -3.43 6.01 -105.06 -0.63 -4.06 16 24 C 0.12 1.56 6.81 -82.33 -0.56 1.00 16 25 C -0.09 -0.92 6.22 -27.49 -0.17 -1.09 16 26 C 0.07 0.57 6.79 37.46 0.25 0.82 16 27 O -0.37 -4.25 10.74 -35.23 -0.38 -4.63 16 28 C 0.14 1.54 7.13 36.07 0.26 1.79 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.39 5.93 8.54 -40.82 -0.35 5.58 16 34 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.12 1.00 7.75 -51.93 -0.40 0.60 16 36 H 0.09 0.63 7.91 -51.92 -0.41 0.22 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 1.12 7.78 -51.93 -0.40 0.71 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -33.63 362.90 -5.53 -39.15 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.77 Total: 2.81 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.61 Total: 6.22 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.58 Total: -45.31 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.29 Total: -17.01 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.12 Total: -6.39 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.63 -5.53 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.196 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds