Wall clock time and date at job start Wed Apr 1 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47376 * 2 1 4 4 C 1.50704 * 109.47116 * 240.00227 * 2 1 3 5 5 H 1.08004 * 119.99906 * 239.99725 * 4 2 1 6 6 C 1.37880 * 119.99850 * 60.00061 * 4 2 1 7 7 N 1.31516 * 120.00108 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47226 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46685 * 120.00244 * 8 6 4 11 11 H 1.48499 * 109.47332 * 239.99760 * 8 6 4 12 12 N 1.46498 * 109.47385 * 120.00328 * 2 1 3 13 13 C 1.34777 * 119.99967 * 275.00114 * 12 2 1 14 14 O 1.21274 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99791 * 179.97438 * 13 12 2 16 16 N 1.46504 * 109.46770 * 180.02562 * 15 13 12 17 17 N 1.40412 * 126.10851 * 270.01896 * 16 15 13 18 18 C 1.31189 * 108.29206 * 179.91589 * 17 16 15 19 19 C 1.50700 * 125.97514 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.47020 * 4.98030 * 19 18 17 21 21 F 1.39896 * 109.47044 * 124.97953 * 19 18 17 22 22 F 1.39901 * 109.47155 * 244.97847 * 19 18 17 23 23 C 1.38920 * 108.07196 * 0.04949 * 18 17 16 24 24 C 1.33943 * 126.11831 * 90.00239 * 16 15 13 25 25 C 1.50895 * 129.25518 * 0.12956 * 24 16 15 26 26 C 1.53579 * 107.70017 * 164.20318 * 25 24 16 27 27 O 1.42998 * 109.66153 * 47.79511 * 26 25 24 28 28 C 1.43420 * 114.40133 * 289.10837 * 27 26 25 29 29 H 1.09002 * 109.47211 * 60.00117 * 1 2 3 30 30 H 1.09005 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46908 * 299.99597 * 1 2 3 32 32 H 0.96994 * 120.00104 * 180.02562 * 7 6 4 33 33 H 0.97005 * 120.00390 * 94.99700 * 12 2 1 34 34 H 1.08993 * 109.47339 * 60.00054 * 15 13 12 35 35 H 1.09003 * 109.47276 * 299.99693 * 15 13 12 36 36 H 1.09007 * 109.80821 * 44.65631 * 25 24 16 37 37 H 1.08997 * 109.81383 * 283.76090 * 25 24 16 38 38 H 1.09001 * 109.44403 * 287.74079 * 26 25 24 39 39 H 1.08996 * 109.40580 * 167.83361 * 26 25 24 40 40 H 1.09002 * 109.76588 * 170.41054 * 28 27 26 41 41 H 1.09001 * 109.76453 * 291.12783 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1677 -1.5863 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1584 2.4116 15 6 2.6489 -0.7290 3.5876 16 7 2.6977 0.2122 4.7093 17 7 3.7907 1.0181 5.0662 18 6 3.4547 1.7248 6.1192 19 6 4.3312 2.7214 6.8331 20 9 5.5342 2.8691 6.1342 21 9 3.6758 3.9555 6.8993 22 9 4.5974 2.2646 8.1283 23 6 2.1501 1.3929 6.4626 24 6 1.7077 0.4580 5.5773 25 6 0.3245 -0.1414 5.6428 26 6 -0.2563 0.1747 7.0290 27 8 -0.0617 1.5596 7.3277 28 6 1.3005 1.9234 7.5902 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7089 1.1616 -3.4843 33 1 2.2490 -1.6319 1.1525 34 1 3.6480 -1.1215 3.3985 35 1 1.9760 -1.5508 3.8325 36 1 0.3828 -1.2211 5.5042 37 1 -0.3055 0.2976 4.8693 38 1 0.2478 -0.4327 7.7807 39 1 -1.3225 -0.0514 7.0351 40 1 1.3892 3.0087 7.6396 41 1 1.6241 1.4839 8.5338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931157487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:57 Heat of formation + Delta-G solvation = -173.550952 kcal Electronic energy + Delta-G solvation = -31212.744902 eV Core-core repulsion = 26292.849458 eV Total energy + Delta-G solvation = -4919.895443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.32282 -48.84126 -48.81493 -43.08205 -40.64694 -39.18728 -36.86988 -35.33570 -34.41860 -33.32333 -31.60023 -31.19741 -29.62200 -27.40381 -27.25890 -25.71800 -24.74464 -23.32039 -22.16091 -21.34983 -20.74158 -19.71729 -19.49313 -19.17703 -18.89923 -18.05665 -17.71926 -17.32617 -16.89153 -16.72527 -16.34533 -16.06011 -15.76781 -15.61654 -15.56728 -15.43949 -15.24137 -14.97071 -14.95512 -14.75471 -14.66457 -14.58509 -14.41506 -13.88000 -13.77755 -13.41444 -13.30674 -13.03528 -12.87995 -12.77711 -12.61380 -12.31306 -12.16328 -12.14371 -11.90353 -11.40531 -11.14189 -10.86812 -10.67311 -10.56469 -9.88735 -9.61817 -8.21127 -6.39067 0.24461 0.72366 0.99810 1.42834 1.44586 1.54959 1.56795 1.57037 2.27752 2.42639 2.51075 2.72298 2.87875 3.10185 3.20683 3.26344 3.52772 3.73032 3.74437 3.82642 3.98051 4.15757 4.28065 4.28501 4.43392 4.63912 4.71033 4.75764 4.86662 4.86998 4.91722 4.96532 5.04560 5.36934 5.52490 5.57700 5.65036 5.84842 6.04735 6.05489 6.14576 6.68554 6.79171 7.26721 7.42081 8.85281 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.002767 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.652251 B =10115.884652 C =11136.753742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.009 1.009 4 C -0.545 4.545 5 H 0.079 0.921 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.256 1.256 10 H -0.278 1.278 11 H -0.288 1.288 12 N -0.693 5.693 13 C 0.482 3.518 14 O -0.592 6.592 15 C 0.111 3.889 16 N -0.322 5.322 17 N -0.270 5.270 18 C -0.016 4.016 19 C 0.562 3.438 20 F -0.174 7.174 21 F -0.165 7.165 22 F -0.158 7.158 23 C -0.263 4.263 24 C 0.110 3.890 25 C -0.094 4.094 26 C 0.064 3.936 27 O -0.393 6.393 28 C 0.141 3.859 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.011 0.989 32 H 0.265 0.735 33 H 0.412 0.588 34 H 0.154 0.846 35 H 0.180 0.820 36 H 0.134 0.866 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -7.508 22.677 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.009 0.991 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.180 1.180 10 H -0.204 1.204 11 H -0.214 1.214 12 N -0.343 5.343 13 C 0.267 3.733 14 O -0.472 6.472 15 C -0.013 4.013 16 N -0.102 5.102 17 N -0.094 5.094 18 C -0.180 4.180 19 C 0.505 3.495 20 F -0.155 7.155 21 F -0.146 7.146 22 F -0.139 7.139 23 C -0.275 4.275 24 C -0.020 4.020 25 C -0.132 4.132 26 C -0.012 4.012 27 O -0.311 6.311 28 C 0.063 3.937 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.171 0.829 35 H 0.197 0.803 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.983 -6.777 21.616 22.675 hybrid contribution 0.348 0.161 -0.948 1.022 sum 1.331 -6.616 20.668 21.742 Atomic orbital electron populations 1.21870 0.97842 0.99850 0.99486 1.18353 0.91383 0.91637 0.81809 0.99095 1.21583 1.32578 1.13644 0.90551 0.90325 1.25818 0.94867 0.95543 1.02472 1.70064 1.37078 1.23977 1.24586 0.85290 0.78098 0.78533 0.78372 1.17990 1.20388 1.21415 1.46143 1.64603 1.14507 1.09020 1.21318 0.78458 0.87478 0.86038 1.90745 1.52517 1.18337 1.85642 1.22071 1.08727 0.89719 0.80758 1.47864 1.08913 1.31228 1.22244 1.77551 1.10363 1.07635 1.13866 1.21698 0.96356 1.01642 0.98345 1.16755 0.77263 0.78746 0.76701 1.93223 1.47356 1.95880 1.79065 1.93233 1.80999 1.44183 1.96213 1.93240 1.93997 1.88748 1.37897 1.20546 0.94746 1.05798 1.06414 1.21464 0.93316 0.97238 0.89946 1.21413 0.86810 1.03273 1.01730 1.22906 1.03541 0.81892 0.92894 1.88035 1.25422 1.27348 1.90344 1.21162 0.79189 1.00573 0.92751 0.91827 0.93294 0.96965 0.92592 0.75126 0.82859 0.80277 0.84846 0.89575 0.90082 0.85009 0.87927 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 9.26 71.98 0.67 -5.65 16 2 C 0.27 13.41 2.56 44.25 0.11 13.52 16 3 H -0.01 -0.54 7.58 -2.39 -0.02 -0.56 16 4 C -0.55 -27.52 8.73 25.60 0.22 -27.30 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -51.99 11.32 21.45 0.24 -51.74 16 8 Si 0.97 40.83 29.54 68.60 2.03 42.85 16 9 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 10 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.69 -25.28 5.07 -446.11 -2.26 -27.55 16 13 C 0.48 17.22 7.86 87.66 0.69 17.91 16 14 O -0.59 -28.56 16.09 -3.01 -0.05 -28.60 16 15 C 0.11 2.47 6.80 85.63 0.58 3.05 16 16 N -0.32 -9.11 3.08 -338.26 -1.04 -10.15 16 17 N -0.27 -9.01 12.38 -47.80 -0.59 -9.60 16 18 C -0.02 -0.47 6.49 42.82 0.28 -0.19 16 19 C 0.56 14.98 3.40 71.24 0.24 15.22 16 20 F -0.17 -5.09 17.14 44.97 0.77 -4.32 16 21 F -0.16 -4.33 16.94 44.97 0.76 -3.57 16 22 F -0.16 -3.56 17.30 44.97 0.78 -2.78 16 23 C -0.26 -6.93 6.01 -20.15 -0.12 -7.05 16 24 C 0.11 2.78 6.81 41.81 0.28 3.06 16 25 C -0.09 -1.56 6.22 30.10 0.19 -1.37 16 26 C 0.06 0.87 6.79 72.18 0.49 1.36 16 27 O -0.39 -8.27 10.74 -148.98 -1.60 -9.87 16 28 C 0.14 2.89 7.13 71.28 0.51 3.40 16 29 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 30 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.41 11.44 8.54 -92.70 -0.79 10.64 16 34 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.18 1.98 7.75 -2.39 -0.02 1.96 16 36 H 0.13 1.14 7.91 -2.38 -0.02 1.12 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 39 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 2.11 7.78 -2.39 -0.02 2.09 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.79 362.90 3.94 -73.85 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.31 Total: 14.38 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 4.59 Total: 17.10 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -3.65 Total: -99.04 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.65 Total: -38.47 kcal Atomic # 9 Polarization: -12.98 SS G_CDS: 2.31 Total: -10.67 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -77.79 3.94 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.703 kcal (2) G-P(sol) polarization free energy of solvation -77.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds