Wall clock time and date at job start Wed Apr 1 2020 06:45:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08998 * 109.47376 * 2 1
4 4 C 1.50704 * 109.47116 * 240.00227 * 2 1 3
5 5 H 1.08004 * 119.99906 * 239.99725 * 4 2 1
6 6 C 1.37880 * 119.99850 * 60.00061 * 4 2 1
7 7 N 1.31516 * 120.00108 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 119.99756 * 179.97438 * 6 4 2
9 9 H 1.48500 * 109.47226 * 0.02562 * 8 6 4
10 10 H 1.48501 * 109.46685 * 120.00244 * 8 6 4
11 11 H 1.48499 * 109.47332 * 239.99760 * 8 6 4
12 12 N 1.46498 * 109.47385 * 120.00328 * 2 1 3
13 13 C 1.34777 * 119.99967 * 275.00114 * 12 2 1
14 14 O 1.21274 * 120.00221 * 359.97438 * 13 12 2
15 15 C 1.50700 * 119.99791 * 179.97438 * 13 12 2
16 16 N 1.46504 * 109.46770 * 180.02562 * 15 13 12
17 17 N 1.40412 * 126.10851 * 270.01896 * 16 15 13
18 18 C 1.31189 * 108.29206 * 179.91589 * 17 16 15
19 19 C 1.50700 * 125.97514 * 179.97438 * 18 17 16
20 20 F 1.39904 * 109.47020 * 4.98030 * 19 18 17
21 21 F 1.39896 * 109.47044 * 124.97953 * 19 18 17
22 22 F 1.39901 * 109.47155 * 244.97847 * 19 18 17
23 23 C 1.38920 * 108.07196 * 0.04949 * 18 17 16
24 24 C 1.33943 * 126.11831 * 90.00239 * 16 15 13
25 25 C 1.50895 * 129.25518 * 0.12956 * 24 16 15
26 26 C 1.53579 * 107.70017 * 164.20318 * 25 24 16
27 27 O 1.42998 * 109.66153 * 47.79511 * 26 25 24
28 28 C 1.43420 * 114.40133 * 289.10837 * 27 26 25
29 29 H 1.09002 * 109.47211 * 60.00117 * 1 2 3
30 30 H 1.09005 * 109.46769 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.46908 * 299.99597 * 1 2 3
32 32 H 0.96994 * 120.00104 * 180.02562 * 7 6 4
33 33 H 0.97005 * 120.00390 * 94.99700 * 12 2 1
34 34 H 1.08993 * 109.47339 * 60.00054 * 15 13 12
35 35 H 1.09003 * 109.47276 * 299.99693 * 15 13 12
36 36 H 1.09007 * 109.80821 * 44.65631 * 25 24 16
37 37 H 1.08997 * 109.81383 * 283.76090 * 25 24 16
38 38 H 1.09001 * 109.44403 * 287.74079 * 26 25 24
39 39 H 1.08996 * 109.40580 * 167.83361 * 26 25 24
40 40 H 1.09002 * 109.76588 * 170.41054 * 28 27 26
41 41 H 1.09001 * 109.76453 * 291.12783 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6533 -1.5885 -1.1314
6 6 1.6992 -0.2392 -2.4828
7 7 0.9435 0.8304 -2.6034
8 14 2.3225 -1.1193 -4.0080
9 1 3.1473 -2.2862 -3.6039
10 1 1.1677 -1.5863 -4.8165
11 1 3.1472 -0.1856 -4.8161
12 7 2.0183 -0.6907 1.1961
13 6 2.1471 -0.0184 2.3571
14 8 1.8590 1.1584 2.4116
15 6 2.6489 -0.7290 3.5876
16 7 2.6977 0.2122 4.7093
17 7 3.7907 1.0181 5.0662
18 6 3.4547 1.7248 6.1192
19 6 4.3312 2.7214 6.8331
20 9 5.5342 2.8691 6.1342
21 9 3.6758 3.9555 6.8993
22 9 4.5974 2.2646 8.1283
23 6 2.1501 1.3929 6.4626
24 6 1.7077 0.4580 5.5773
25 6 0.3245 -0.1414 5.6428
26 6 -0.2563 0.1747 7.0290
27 8 -0.0617 1.5596 7.3277
28 6 1.3005 1.9234 7.5902
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.7089 1.1616 -3.4843
33 1 2.2490 -1.6319 1.1525
34 1 3.6480 -1.1215 3.3985
35 1 1.9760 -1.5508 3.8325
36 1 0.3828 -1.2211 5.5042
37 1 -0.3055 0.2976 4.8693
38 1 0.2478 -0.4327 7.7807
39 1 -1.3225 -0.0514 7.0351
40 1 1.3892 3.0087 7.6396
41 1 1.6241 1.4839 8.5338
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000931157487.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:45:57
Heat of formation + Delta-G solvation = -173.550952 kcal
Electronic energy + Delta-G solvation = -31212.744902 eV
Core-core repulsion = 26292.849458 eV
Total energy + Delta-G solvation = -4919.895443 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-51.32282 -48.84126 -48.81493 -43.08205 -40.64694 -39.18728 -36.86988 -35.33570
-34.41860 -33.32333 -31.60023 -31.19741 -29.62200 -27.40381 -27.25890 -25.71800
-24.74464 -23.32039 -22.16091 -21.34983 -20.74158 -19.71729 -19.49313 -19.17703
-18.89923 -18.05665 -17.71926 -17.32617 -16.89153 -16.72527 -16.34533 -16.06011
-15.76781 -15.61654 -15.56728 -15.43949 -15.24137 -14.97071 -14.95512 -14.75471
-14.66457 -14.58509 -14.41506 -13.88000 -13.77755 -13.41444 -13.30674 -13.03528
-12.87995 -12.77711 -12.61380 -12.31306 -12.16328 -12.14371 -11.90353 -11.40531
-11.14189 -10.86812 -10.67311 -10.56469 -9.88735 -9.61817 -8.21127 -6.39067
0.24461 0.72366 0.99810 1.42834 1.44586 1.54959 1.56795 1.57037
2.27752 2.42639 2.51075 2.72298 2.87875 3.10185 3.20683 3.26344
3.52772 3.73032 3.74437 3.82642 3.98051 4.15757 4.28065 4.28501
4.43392 4.63912 4.71033 4.75764 4.86662 4.86998 4.91722 4.96532
5.04560 5.36934 5.52490 5.57700 5.65036 5.84842 6.04735 6.05489
6.14576 6.68554 6.79171 7.26721 7.42081 8.85281
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.015486 B = 0.002767 C = 0.002514
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1807.652251 B =10115.884652 C =11136.753742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.272 3.728
3 H -0.009 1.009
4 C -0.545 4.545
5 H 0.079 0.921
6 C 0.013 3.987
7 N -0.919 5.919
8 Si 0.972 3.028
9 H -0.256 1.256
10 H -0.278 1.278
11 H -0.288 1.288
12 N -0.693 5.693
13 C 0.482 3.518
14 O -0.592 6.592
15 C 0.111 3.889
16 N -0.322 5.322
17 N -0.270 5.270
18 C -0.016 4.016
19 C 0.562 3.438
20 F -0.174 7.174
21 F -0.165 7.165
22 F -0.158 7.158
23 C -0.263 4.263
24 C 0.110 3.890
25 C -0.094 4.094
26 C 0.064 3.936
27 O -0.393 6.393
28 C 0.141 3.859
29 H 0.063 0.937
30 H 0.048 0.952
31 H 0.011 0.989
32 H 0.265 0.735
33 H 0.412 0.588
34 H 0.154 0.846
35 H 0.180 0.820
36 H 0.134 0.866
37 H 0.086 0.914
38 H 0.081 0.919
39 H 0.132 0.868
40 H 0.103 0.897
41 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.463 -7.508 22.677 23.892
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.168 3.832
3 H 0.009 0.991
4 C -0.584 4.584
5 H 0.097 0.903
6 C -0.187 4.187
7 N -0.557 5.557
8 Si 0.797 3.203
9 H -0.180 1.180
10 H -0.204 1.204
11 H -0.214 1.214
12 N -0.343 5.343
13 C 0.267 3.733
14 O -0.472 6.472
15 C -0.013 4.013
16 N -0.102 5.102
17 N -0.094 5.094
18 C -0.180 4.180
19 C 0.505 3.495
20 F -0.155 7.155
21 F -0.146 7.146
22 F -0.139 7.139
23 C -0.275 4.275
24 C -0.020 4.020
25 C -0.132 4.132
26 C -0.012 4.012
27 O -0.311 6.311
28 C 0.063 3.937
29 H 0.082 0.918
30 H 0.067 0.933
31 H 0.030 0.970
32 H 0.074 0.926
33 H 0.249 0.751
34 H 0.171 0.829
35 H 0.197 0.803
36 H 0.152 0.848
37 H 0.104 0.896
38 H 0.099 0.901
39 H 0.150 0.850
40 H 0.121 0.879
41 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 0.983 -6.777 21.616 22.675
hybrid contribution 0.348 0.161 -0.948 1.022
sum 1.331 -6.616 20.668 21.742
Atomic orbital electron populations
1.21870 0.97842 0.99850 0.99486 1.18353 0.91383 0.91637 0.81809
0.99095 1.21583 1.32578 1.13644 0.90551 0.90325 1.25818 0.94867
0.95543 1.02472 1.70064 1.37078 1.23977 1.24586 0.85290 0.78098
0.78533 0.78372 1.17990 1.20388 1.21415 1.46143 1.64603 1.14507
1.09020 1.21318 0.78458 0.87478 0.86038 1.90745 1.52517 1.18337
1.85642 1.22071 1.08727 0.89719 0.80758 1.47864 1.08913 1.31228
1.22244 1.77551 1.10363 1.07635 1.13866 1.21698 0.96356 1.01642
0.98345 1.16755 0.77263 0.78746 0.76701 1.93223 1.47356 1.95880
1.79065 1.93233 1.80999 1.44183 1.96213 1.93240 1.93997 1.88748
1.37897 1.20546 0.94746 1.05798 1.06414 1.21464 0.93316 0.97238
0.89946 1.21413 0.86810 1.03273 1.01730 1.22906 1.03541 0.81892
0.92894 1.88035 1.25422 1.27348 1.90344 1.21162 0.79189 1.00573
0.92751 0.91827 0.93294 0.96965 0.92592 0.75126 0.82859 0.80277
0.84846 0.89575 0.90082 0.85009 0.87927 0.89091
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.31 9.26 71.98 0.67 -5.65 16
2 C 0.27 13.41 2.56 44.25 0.11 13.52 16
3 H -0.01 -0.54 7.58 -2.39 -0.02 -0.56 16
4 C -0.55 -27.52 8.73 25.60 0.22 -27.30 16
5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16
6 C 0.01 0.68 5.30 84.66 0.45 1.13 16
7 N -0.92 -51.99 11.32 21.45 0.24 -51.74 16
8 Si 0.97 40.83 29.54 68.60 2.03 42.85 16
9 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16
10 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16
11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16
12 N -0.69 -25.28 5.07 -446.11 -2.26 -27.55 16
13 C 0.48 17.22 7.86 87.66 0.69 17.91 16
14 O -0.59 -28.56 16.09 -3.01 -0.05 -28.60 16
15 C 0.11 2.47 6.80 85.63 0.58 3.05 16
16 N -0.32 -9.11 3.08 -338.26 -1.04 -10.15 16
17 N -0.27 -9.01 12.38 -47.80 -0.59 -9.60 16
18 C -0.02 -0.47 6.49 42.82 0.28 -0.19 16
19 C 0.56 14.98 3.40 71.24 0.24 15.22 16
20 F -0.17 -5.09 17.14 44.97 0.77 -4.32 16
21 F -0.16 -4.33 16.94 44.97 0.76 -3.57 16
22 F -0.16 -3.56 17.30 44.97 0.78 -2.78 16
23 C -0.26 -6.93 6.01 -20.15 -0.12 -7.05 16
24 C 0.11 2.78 6.81 41.81 0.28 3.06 16
25 C -0.09 -1.56 6.22 30.10 0.19 -1.37 16
26 C 0.06 0.87 6.79 72.18 0.49 1.36 16
27 O -0.39 -8.27 10.74 -148.98 -1.60 -9.87 16
28 C 0.14 2.89 7.13 71.28 0.51 3.40 16
29 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16
30 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16
31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
32 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16
33 H 0.41 11.44 8.54 -92.70 -0.79 10.64 16
34 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16
35 H 0.18 1.98 7.75 -2.39 -0.02 1.96 16
36 H 0.13 1.14 7.91 -2.38 -0.02 1.12 16
37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
38 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16
39 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16
40 H 0.10 2.11 7.78 -2.39 -0.02 2.09 16
41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
Total: -1.00 -77.79 362.90 3.94 -73.85
By element:
Atomic # 1 Polarization: 14.07 SS G_CDS: 0.31 Total: 14.38 kcal
Atomic # 6 Polarization: 12.51 SS G_CDS: 4.59 Total: 17.10 kcal
Atomic # 7 Polarization: -95.39 SS G_CDS: -3.65 Total: -99.04 kcal
Atomic # 8 Polarization: -36.82 SS G_CDS: -1.65 Total: -38.47 kcal
Atomic # 9 Polarization: -12.98 SS G_CDS: 2.31 Total: -10.67 kcal
Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal
Total: -77.79 3.94 -73.85 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931157487.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.703 kcal
(2) G-P(sol) polarization free energy of solvation -77.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal
(6) G-S(sol) free energy of system = (1) + (5) -173.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds