Wall clock time and date at job start Wed Apr 1 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47024 * 2 1 4 4 C 1.50697 * 109.47086 * 120.00653 * 2 1 3 5 5 H 1.08000 * 119.99874 * 120.00199 * 4 2 1 6 6 C 1.37877 * 119.99957 * 299.99735 * 4 2 1 7 7 N 1.31513 * 120.00148 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99613 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47337 * 120.00242 * 8 6 4 11 11 H 1.48500 * 109.46561 * 239.99744 * 8 6 4 12 12 N 1.46503 * 109.46734 * 240.00635 * 2 1 3 13 13 C 1.34776 * 120.00057 * 85.00024 * 12 2 1 14 14 O 1.21281 * 119.99994 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00041 * 179.97438 * 13 12 2 16 16 N 1.46498 * 109.47050 * 179.97438 * 15 13 12 17 17 N 1.40631 * 126.13541 * 269.88566 * 16 15 13 18 18 C 1.31181 * 108.28393 * 179.97438 * 17 16 15 19 19 C 1.50705 * 125.98069 * 180.02562 * 18 17 16 20 20 F 1.39894 * 109.47054 * 270.04228 * 19 18 17 21 21 F 1.39902 * 109.46982 * 30.04045 * 19 18 17 22 22 F 1.39900 * 109.47318 * 150.03969 * 19 18 17 23 23 C 1.38992 * 108.04314 * 0.08383 * 18 17 16 24 24 C 1.33945 * 126.11432 * 89.99840 * 16 15 13 25 25 C 1.50893 * 129.25353 * 0.11699 * 24 16 15 26 26 C 1.53584 * 107.70165 * 164.19042 * 25 24 16 27 27 O 1.43000 * 109.66784 * 47.77394 * 26 25 24 28 28 C 1.43425 * 114.39718 * 289.11077 * 27 26 25 29 29 H 1.09002 * 109.47324 * 59.99489 * 1 2 3 30 30 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47120 * 299.99298 * 1 2 3 32 32 H 0.96993 * 120.00057 * 179.97438 * 7 6 4 33 33 H 0.96998 * 119.99741 * 264.99802 * 12 2 1 34 34 H 1.09001 * 109.46930 * 59.99830 * 15 13 12 35 35 H 1.08993 * 109.47079 * 300.00153 * 15 13 12 36 36 H 1.08994 * 109.81794 * 44.63505 * 25 24 16 37 37 H 1.09001 * 109.86331 * 283.76474 * 25 24 16 38 38 H 1.08995 * 109.43480 * 287.71640 * 26 25 24 39 39 H 1.09000 * 109.40489 * 167.81520 * 26 25 24 40 40 H 1.09002 * 109.76523 * 170.42899 * 28 27 26 41 41 H 1.09004 * 109.76526 * 291.15241 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6035 8 14 2.3226 -1.1200 4.0077 9 1 3.1474 -2.2868 3.6034 10 1 3.1474 -0.1864 4.8160 11 1 1.1679 -1.5870 4.8162 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8581 1.1586 -2.4116 15 6 2.6498 -0.7282 -3.5876 16 7 2.6983 0.2131 -4.7091 17 7 1.6600 0.4692 -5.6224 18 6 2.0786 1.3699 -6.4794 19 6 1.2841 1.9355 -7.6283 20 9 1.4910 1.1521 -8.7687 21 9 -0.0761 1.9323 -7.3010 22 9 1.6996 3.2470 -7.8818 23 6 3.3835 1.7104 -6.1432 24 6 3.7406 0.9825 -5.0495 25 6 5.0998 1.0894 -4.4030 26 6 6.0349 1.7957 -5.3957 27 8 5.3939 2.9651 -5.9122 28 6 4.3082 2.6977 -6.8105 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.7083 1.1605 3.4845 33 1 2.2490 -1.6316 -1.1528 34 1 1.9775 -1.5505 -3.8327 35 1 3.6490 -1.1200 -3.3981 36 1 5.4822 0.0935 -4.1797 37 1 5.0282 1.6720 -3.4845 38 1 6.2703 1.1186 -6.2167 39 1 6.9549 2.0816 -4.8860 40 1 3.7701 3.6213 -7.0236 41 1 4.6931 2.2730 -7.7377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:02 Heat of formation + Delta-G solvation = -149.417856 kcal Electronic energy + Delta-G solvation = -31209.420416 eV Core-core repulsion = 26290.571462 eV Total energy + Delta-G solvation = -4918.848954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.29064 -47.84040 -47.75420 -42.03993 -39.13994 -38.31928 -35.10601 -34.21018 -32.64023 -32.34726 -30.54482 -29.77866 -28.28141 -26.28577 -25.37416 -24.67585 -23.91618 -21.82144 -20.90621 -19.86637 -19.67284 -18.67773 -18.38452 -17.93621 -17.67306 -16.93429 -16.39015 -16.12151 -15.71524 -15.32053 -14.95661 -14.83091 -14.76217 -14.59234 -14.51927 -14.20648 -14.11019 -13.95796 -13.91322 -13.78336 -13.54143 -13.17663 -12.88103 -12.58615 -12.49052 -12.36129 -11.80599 -11.70587 -11.30406 -11.20636 -11.06932 -11.04325 -10.87025 -10.42496 -10.35022 -10.22381 -9.94823 -9.27559 -9.16997 -8.68685 -8.57382 -8.15530 -6.23015 -4.33739 1.33412 1.72401 2.01162 2.59162 2.96882 3.16437 3.24243 3.26340 3.43210 3.58391 3.73046 3.83241 4.15816 4.23784 4.25922 4.43710 4.54612 4.67166 4.84004 4.87959 5.04839 5.09075 5.12141 5.14532 5.18132 5.36546 5.51674 5.61716 5.80250 5.90574 6.54903 6.69913 6.83080 6.85622 7.01296 7.13313 7.23177 7.37673 7.55194 7.76264 8.01901 8.39302 8.60336 8.84091 9.33964 10.82907 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.002756 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.635212 B =10155.617103 C =11141.402073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.701 5.701 13 C 0.484 3.516 14 O -0.532 6.532 15 C 0.102 3.898 16 N -0.315 5.315 17 N -0.228 5.228 18 C -0.004 4.004 19 C 0.559 3.441 20 F -0.170 7.170 21 F -0.165 7.165 22 F -0.165 7.165 23 C -0.253 4.253 24 C 0.118 3.882 25 C -0.095 4.095 26 C 0.069 3.931 27 O -0.373 6.373 28 C 0.139 3.861 29 H 0.014 0.986 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.265 0.735 33 H 0.391 0.609 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.859 -2.338 -19.316 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.349 5.349 13 C 0.265 3.735 14 O -0.409 6.409 15 C -0.023 4.023 16 N -0.094 5.094 17 N -0.051 5.051 18 C -0.169 4.169 19 C 0.502 3.498 20 F -0.151 7.151 21 F -0.146 7.146 22 F -0.147 7.147 23 C -0.265 4.265 24 C -0.011 4.011 25 C -0.134 4.134 26 C -0.009 4.009 27 O -0.291 6.291 28 C 0.061 3.939 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.593 -2.009 -18.680 20.264 hybrid contribution 0.511 -0.784 0.661 1.146 sum 8.103 -2.793 -18.019 19.954 Atomic orbital electron populations 1.22087 0.98227 0.99268 1.01080 1.18822 0.91190 0.93966 0.79540 0.93272 1.21202 1.32819 1.13383 0.90148 0.91906 1.24901 0.94710 0.94915 0.99154 1.69907 1.35560 1.22355 1.23994 0.86366 0.78648 0.79473 0.82445 1.19707 1.20796 1.20799 1.46511 1.64713 1.13632 1.10088 1.20372 0.80285 0.88104 0.84697 1.90767 1.50132 1.15592 1.84418 1.21880 1.05756 0.91210 0.83469 1.47727 1.08556 1.31354 1.21788 1.77678 1.09072 1.17326 1.01018 1.21444 0.95049 1.01927 0.98497 1.16846 0.77158 0.75500 0.80280 1.93230 1.94749 1.74590 1.52567 1.93254 1.32729 1.96199 1.92416 1.93194 1.90059 1.36916 1.94491 1.20141 0.95580 1.07931 1.02837 1.20765 0.92107 0.92841 0.95430 1.21204 0.88499 1.03098 1.00599 1.22615 0.94782 0.87792 0.95718 1.88067 1.47261 1.30241 1.63497 1.21140 0.85030 0.97254 0.90438 0.96650 0.95315 0.88967 0.92462 0.77645 0.85462 0.85709 0.88659 0.87705 0.92328 0.87403 0.87250 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.27 6.45 2.56 -69.08 -0.18 6.28 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.23 11.32 55.43 0.63 -23.60 16 8 Si 0.90 19.88 29.54 -169.99 -5.02 14.85 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.70 -13.14 5.07 -54.93 -0.28 -13.42 16 13 C 0.48 8.81 7.86 -10.99 -0.09 8.72 16 14 O -0.53 -12.47 16.09 5.56 0.09 -12.38 16 15 C 0.10 1.28 6.80 -5.19 -0.04 1.24 16 16 N -0.31 -4.68 3.09 -58.27 -0.18 -4.86 16 17 N -0.23 -3.78 12.55 33.55 0.42 -3.36 16 18 C 0.00 -0.06 6.55 -82.59 -0.54 -0.60 16 19 C 0.56 7.38 3.53 36.01 0.13 7.50 16 20 F -0.17 -2.06 17.30 2.25 0.04 -2.02 16 21 F -0.16 -2.39 17.25 2.25 0.04 -2.35 16 22 F -0.17 -1.99 15.29 2.25 0.03 -1.95 16 23 C -0.25 -3.47 5.94 -105.03 -0.62 -4.09 16 24 C 0.12 1.61 6.81 -82.33 -0.56 1.05 16 25 C -0.10 -0.95 6.22 -27.49 -0.17 -1.12 16 26 C 0.07 0.58 6.79 37.46 0.25 0.84 16 27 O -0.37 -4.34 10.74 -35.23 -0.38 -4.71 16 28 C 0.14 1.54 6.65 36.07 0.24 1.78 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.39 5.94 8.54 -40.82 -0.35 5.59 16 34 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.13 1.03 7.75 -51.93 -0.40 0.63 16 36 H 0.10 0.67 7.91 -51.93 -0.41 0.26 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 1.18 6.84 -51.93 -0.35 0.82 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -33.43 360.23 -5.53 -38.95 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.72 Total: 3.28 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.62 Total: 6.16 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.59 Total: -45.25 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.29 Total: -17.10 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.43 -5.53 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.464 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds