Wall clock time and date at job start Wed Apr 1 2020 06:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47024 * 2 1 4 4 C 1.50697 * 109.47086 * 120.00653 * 2 1 3 5 5 H 1.08000 * 119.99874 * 120.00199 * 4 2 1 6 6 C 1.37877 * 119.99957 * 299.99735 * 4 2 1 7 7 N 1.31513 * 120.00148 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99613 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47337 * 120.00242 * 8 6 4 11 11 H 1.48500 * 109.46561 * 239.99744 * 8 6 4 12 12 N 1.46503 * 109.46734 * 240.00635 * 2 1 3 13 13 C 1.34776 * 120.00057 * 85.00024 * 12 2 1 14 14 O 1.21281 * 119.99994 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00041 * 179.97438 * 13 12 2 16 16 N 1.46498 * 109.47050 * 179.97438 * 15 13 12 17 17 N 1.40631 * 126.13541 * 269.88566 * 16 15 13 18 18 C 1.31181 * 108.28393 * 179.97438 * 17 16 15 19 19 C 1.50705 * 125.98069 * 180.02562 * 18 17 16 20 20 F 1.39894 * 109.47054 * 270.04228 * 19 18 17 21 21 F 1.39902 * 109.46982 * 30.04045 * 19 18 17 22 22 F 1.39900 * 109.47318 * 150.03969 * 19 18 17 23 23 C 1.38992 * 108.04314 * 0.08383 * 18 17 16 24 24 C 1.33945 * 126.11432 * 89.99840 * 16 15 13 25 25 C 1.50893 * 129.25353 * 0.11699 * 24 16 15 26 26 C 1.53584 * 107.70165 * 164.19042 * 25 24 16 27 27 O 1.43000 * 109.66784 * 47.77394 * 26 25 24 28 28 C 1.43425 * 114.39718 * 289.11077 * 27 26 25 29 29 H 1.09002 * 109.47324 * 59.99489 * 1 2 3 30 30 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47120 * 299.99298 * 1 2 3 32 32 H 0.96993 * 120.00057 * 179.97438 * 7 6 4 33 33 H 0.96998 * 119.99741 * 264.99802 * 12 2 1 34 34 H 1.09001 * 109.46930 * 59.99830 * 15 13 12 35 35 H 1.08993 * 109.47079 * 300.00153 * 15 13 12 36 36 H 1.08994 * 109.81794 * 44.63505 * 25 24 16 37 37 H 1.09001 * 109.86331 * 283.76474 * 25 24 16 38 38 H 1.08995 * 109.43480 * 287.71640 * 26 25 24 39 39 H 1.09000 * 109.40489 * 167.81520 * 26 25 24 40 40 H 1.09002 * 109.76523 * 170.42899 * 28 27 26 41 41 H 1.09004 * 109.76526 * 291.15241 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6035 8 14 2.3226 -1.1200 4.0077 9 1 3.1474 -2.2868 3.6034 10 1 3.1474 -0.1864 4.8160 11 1 1.1679 -1.5870 4.8162 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8581 1.1586 -2.4116 15 6 2.6498 -0.7282 -3.5876 16 7 2.6983 0.2131 -4.7091 17 7 1.6600 0.4692 -5.6224 18 6 2.0786 1.3699 -6.4794 19 6 1.2841 1.9355 -7.6283 20 9 1.4910 1.1521 -8.7687 21 9 -0.0761 1.9323 -7.3010 22 9 1.6996 3.2470 -7.8818 23 6 3.3835 1.7104 -6.1432 24 6 3.7406 0.9825 -5.0495 25 6 5.0998 1.0894 -4.4030 26 6 6.0349 1.7957 -5.3957 27 8 5.3939 2.9651 -5.9122 28 6 4.3082 2.6977 -6.8105 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.7083 1.1605 3.4845 33 1 2.2490 -1.6316 -1.1528 34 1 1.9775 -1.5505 -3.8327 35 1 3.6490 -1.1200 -3.3981 36 1 5.4822 0.0935 -4.1797 37 1 5.0282 1.6720 -3.4845 38 1 6.2703 1.1186 -6.2167 39 1 6.9549 2.0816 -4.8860 40 1 3.7701 3.6213 -7.0236 41 1 4.6931 2.2730 -7.7377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931157488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:01 Heat of formation + Delta-G solvation = -173.455008 kcal Electronic energy + Delta-G solvation = -31210.462745 eV Core-core repulsion = 26290.571462 eV Total energy + Delta-G solvation = -4919.891283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.33298 -48.86072 -48.81833 -43.06132 -40.64651 -39.18000 -36.87231 -35.33311 -34.41376 -33.31904 -31.59179 -31.20762 -29.62122 -27.42505 -27.27537 -25.68793 -24.74352 -23.33027 -22.17856 -21.36803 -20.74686 -19.71803 -19.47292 -19.17950 -18.89297 -18.02160 -17.72265 -17.37826 -16.90553 -16.71666 -16.30473 -16.07740 -15.76294 -15.66114 -15.53099 -15.47039 -15.24160 -14.98961 -14.96294 -14.82779 -14.64062 -14.48838 -14.39906 -13.85126 -13.84503 -13.40894 -13.32621 -13.03123 -12.88378 -12.78764 -12.58456 -12.32911 -12.16638 -12.13128 -11.90617 -11.40696 -11.14414 -10.86699 -10.66905 -10.56632 -9.89397 -9.61423 -8.20037 -6.38256 0.23776 0.71447 0.99251 1.44616 1.45915 1.55603 1.56182 1.58069 2.27686 2.42371 2.51377 2.72300 2.88031 3.11400 3.20229 3.26502 3.52857 3.72989 3.74729 3.82415 3.97934 4.15712 4.27750 4.28158 4.43253 4.65085 4.67790 4.75779 4.84175 4.86504 4.91251 4.97166 5.03240 5.35037 5.52694 5.57467 5.63168 5.83454 6.03643 6.03996 6.14619 6.69311 6.79227 7.27283 7.42414 8.86577 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.002756 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.635212 B =10155.617103 C =11141.402073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.273 3.727 3 H -0.003 1.003 4 C -0.543 4.543 5 H 0.082 0.918 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.254 1.254 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.693 5.693 13 C 0.482 3.518 14 O -0.592 6.592 15 C 0.111 3.889 16 N -0.323 5.323 17 N -0.269 5.269 18 C -0.015 4.015 19 C 0.563 3.437 20 F -0.162 7.162 21 F -0.176 7.176 22 F -0.158 7.158 23 C -0.264 4.264 24 C 0.111 3.889 25 C -0.094 4.094 26 C 0.065 3.935 27 O -0.394 6.394 28 C 0.140 3.860 29 H 0.004 0.996 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.412 0.588 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.248 -4.720 -19.900 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.015 0.985 4 C -0.581 4.581 5 H 0.100 0.900 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.177 1.177 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.343 5.343 13 C 0.267 3.733 14 O -0.472 6.472 15 C -0.013 4.013 16 N -0.104 5.104 17 N -0.093 5.093 18 C -0.180 4.180 19 C 0.507 3.493 20 F -0.143 7.143 21 F -0.157 7.157 22 F -0.140 7.140 23 C -0.276 4.276 24 C -0.019 4.019 25 C -0.133 4.133 26 C -0.012 4.012 27 O -0.312 6.312 28 C 0.062 3.938 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.173 0.827 35 H 0.195 0.805 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.003 -4.444 -19.299 22.187 hybrid contribution -0.227 0.013 0.808 0.840 sum 9.776 -4.432 -18.491 21.380 Atomic orbital electron populations 1.21920 0.98700 0.99560 0.99237 1.18340 0.90787 0.91980 0.81909 0.98478 1.21566 1.32564 1.13648 0.90325 0.90018 1.25843 0.94851 0.95529 1.02553 1.70070 1.37070 1.24127 1.24585 0.85265 0.78011 0.78600 0.78264 1.17744 1.21170 1.20851 1.46142 1.64592 1.14496 1.09052 1.21325 0.78670 0.87463 0.85840 1.90747 1.52452 1.18540 1.85495 1.22065 1.09063 0.90303 0.79837 1.47919 1.08497 1.32061 1.21883 1.77578 1.10536 1.18819 1.02326 1.21733 0.95810 1.01799 0.98630 1.16730 0.76533 0.75783 0.80257 1.93240 1.94645 1.74433 1.52025 1.93229 1.33606 1.96282 1.92569 1.93205 1.89918 1.36424 1.94418 1.20576 0.95462 1.08285 1.03297 1.21443 0.93101 0.92011 0.95320 1.21407 0.87000 1.05106 0.99794 1.22899 0.94765 0.87300 0.96255 1.88040 1.47262 1.32130 1.63788 1.21237 0.84772 0.96644 0.91114 0.97689 0.93725 0.91598 0.92617 0.75115 0.82668 0.80476 0.84917 0.89686 0.90054 0.85089 0.87613 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.78 9.26 71.98 0.67 -6.12 16 2 C 0.27 13.48 2.56 44.25 0.11 13.60 16 3 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 4 C -0.54 -26.97 8.73 25.60 0.22 -26.74 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -51.89 11.32 21.45 0.24 -51.64 16 8 Si 0.97 40.19 29.54 68.60 2.03 42.21 16 9 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 10 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 N -0.69 -25.29 5.07 -446.09 -2.26 -27.55 16 13 C 0.48 17.23 7.86 87.66 0.69 17.92 16 14 O -0.59 -28.58 16.09 -3.03 -0.05 -28.63 16 15 C 0.11 2.48 6.80 85.63 0.58 3.06 16 16 N -0.32 -9.16 3.09 -338.28 -1.04 -10.20 16 17 N -0.27 -8.87 12.55 -47.76 -0.60 -9.47 16 18 C -0.01 -0.44 6.55 42.84 0.28 -0.16 16 19 C 0.56 14.83 3.53 71.24 0.25 15.08 16 20 F -0.16 -3.82 17.30 44.97 0.78 -3.04 16 21 F -0.18 -5.19 17.25 44.97 0.78 -4.42 16 22 F -0.16 -3.78 15.29 44.97 0.69 -3.09 16 23 C -0.26 -7.00 5.94 -20.13 -0.12 -7.12 16 24 C 0.11 2.84 6.81 41.81 0.28 3.12 16 25 C -0.09 -1.65 6.22 30.11 0.19 -1.46 16 26 C 0.06 0.91 6.79 72.18 0.49 1.40 16 27 O -0.39 -8.49 10.74 -148.98 -1.60 -10.09 16 28 C 0.14 2.91 6.65 71.28 0.47 3.39 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 32 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.41 11.42 8.54 -92.71 -0.79 10.63 16 34 H 0.16 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.18 2.06 7.75 -2.39 -0.02 2.04 16 36 H 0.13 1.26 7.91 -2.39 -0.02 1.24 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 39 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.11 2.22 6.84 -2.39 -0.02 2.20 16 41 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -77.04 360.23 3.84 -73.20 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.31 Total: 15.65 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 4.57 Total: 17.06 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -3.66 Total: -98.86 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.65 Total: -38.71 kcal Atomic # 9 Polarization: -12.79 SS G_CDS: 2.24 Total: -10.55 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -77.04 3.84 -73.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.254 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds